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1,000 results • Page
3 of 20
Sort: Rank
Rank
Views
Votes
Replies
3
votes
3
replies
481
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 9 days ago by
swbarnes2
14k • written 10 days ago by
noodle
▴ 560
0
votes
2
replies
543
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
10 days ago by
航太郎
• 0
0
votes
0
replies
216
views
create genewise sync file in popoolation
popoolation
updated 10 days ago by
GenoMax
141k • written 10 days ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
381
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
10 days ago by
Ashok
• 0
0
votes
2
replies
419
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
10 days ago by
Ashok
• 0
0
votes
0
replies
216
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 10 days ago by
Ram
43k • written 10 days ago by
samuelkalandarov2002
▴ 10
0
votes
2
replies
428
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
9 days ago by
_quantum_girl_
▴ 10
0
votes
0
replies
206
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
6 days ago by
Javier
• 0
0
votes
0
replies
181
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
10 days ago by
enferdeflame
• 0
1
vote
1
reply
421
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 8 days ago by
Gordon Smyth
★ 7.0k • written 10 days ago by
Chris
▴ 260
0
votes
1
reply
403
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 10 days ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
0
votes
0
replies
161
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 10 days ago by
Ram
43k • written 11 days ago by
bioinfo223
▴ 10
0
votes
0
replies
179
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
11 days ago by
P.
• 0
0
votes
0
replies
171
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
11 days ago by
ekirsch
• 0
1
vote
1
reply
411
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
9 days ago by
renan.igor
• 0
0
votes
0
replies
182
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
11 days ago by
synat.keam
▴ 100
0
votes
1
reply
273
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 11 days ago by
GenoMax
141k • written 11 days ago by
ycts
• 0
0
votes
4
replies
588
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
10 days ago by
Kai Xin
• 0
1
vote
1
reply
227
views
Retrieve a % coverage for each transcript
RNA-seq
updated 11 days ago by
Ram
43k • written 11 days ago by
jammydodger123456
▴ 40
0
votes
2
replies
377
views
How can I solve this error?
metal
11 days ago by
22211020193
• 0
0
votes
0
replies
170
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 11 days ago by
GenoMax
141k • written 11 days ago by
srimmer
• 0
1
vote
2
replies
280
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 11 days ago by
Ram
43k • written 11 days ago by
aniigodwinn
• 0
0
votes
0
replies
357
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
11 days ago by
Ronin
• 0
2
votes
7
replies
835
views
Removing duplicates
duplicates
ONT
minimap2
updated 10 days ago by
noodle
▴ 560 • written 11 days ago by
quentinperriere
• 0
0
votes
1
reply
201
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 11 days ago by
DKA
▴ 40 • written 11 days ago by
james.melhorn
• 0
0
votes
1
reply
191
views
Freyja plot error
Freyja
updated 11 days ago by
Ram
43k • written 11 days ago by
Adyasha
• 0
0
votes
0
replies
160
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
11 days ago by
chemokine-1
▴ 10
0
votes
4
replies
512
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
11 days ago by
feather-W
• 0
0
votes
2
replies
229
views
Bedmethyl file format
bedmethyl
methylation
updated 11 days ago by
GenoMax
141k • written 12 days ago by
njornet
▴ 20
0
votes
0
replies
171
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
12 days ago by
Ali
• 0
2
votes
4
replies
326
views
SnpEff annotates coding duplication as intronic?
snpeff
12 days ago by
kirill.zaslavsky
• 0
0
votes
2
replies
255
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
11 days ago by
mropri
▴ 150
0
votes
0
replies
146
views
Input into WGCNA and Error on constructNetworks on RNA-Seq data - unique rownames
rownames
RNA-Seq
WGCNA
unique
12 days ago by
shasabhi1
• 0
0
votes
0
replies
137
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
12 days ago by
Nishat
• 0
0
votes
0
replies
165
views
what exactly is a k-mer table (remora)?
remora
basecall
12 days ago by
anne
• 0
1
vote
1
reply
183
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 12 days ago by
dsull
★ 5.9k • written 12 days ago by
niruf
• 0
0
votes
0
replies
145
views
GWAS Phenotypes
GWAS
12 days ago by
solomoncharles77
▴ 90
0
votes
2
replies
322
views
GSEA analysis in R
GSEA
R
Arabidopsis
10 days ago by
Sudip
• 0
0
votes
0
replies
124
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
12 days ago by
QX
• 0
2
votes
5
replies
476
views
Where to find the homopolymer regions bed file for Hg002 genome?
simple-repeats
hg002
bed
homopolymer-regions
12 days ago by
Bikram Kumar
• 0
0
votes
2
replies
263
views
Statistical Advice Needed for RNAseq Data Analysis
Statistical-Significance
Genomics
RNA-seq
Data-Analysis
updated 12 days ago by
Ram
43k • written 13 days ago by
David
• 0
1
vote
2
replies
277
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
12 days ago by
bioinfo
▴ 150
0
votes
1
reply
199
views
How to get the reference panel sites for TOPMed hg37 and 38
Imputation
updated 13 days ago by
bk11
★ 2.4k • written 13 days ago by
sinhas
• 0
0
votes
1
reply
215
views
merging Seurat objects after SCT
Seurat
SCT
updated 13 days ago by
Ram
43k • written 13 days ago by
michelle.swarovski
• 0
0
votes
1
reply
217
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 13 days ago by
GenoMax
141k • written 13 days ago by
haiying.kong
▴ 360
0
votes
2
replies
272
views
RNAseq 1 control 2 different treatment
RNA-seq
12 days ago by
matteo.levorato
• 0
1
vote
0
replies
146
views
Seeking Advice on Gene Ontology Analysis for Bulk RNA-Seq Data Without Control Samples
Gene-ontology
RNA-seq
R
updated 13 days ago by
Ram
43k • written 13 days ago by
Oscar
▴ 10
0
votes
0
replies
157
views
How should I make kallisto indexes?
kallisto
updated 13 days ago by
GenoMax
141k • written 13 days ago by
bioinfo
▴ 150
2
votes
0
replies
210
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
13 days ago by
Alexander
▴ 220
1
vote
1
reply
186
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 13 days ago by
GenoMax
141k • written 13 days ago by
eesiribloom
▴ 80
1,000 results • Page
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Answer: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
NGS forensics: how to know if data is fabricated
Comment: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
Answer: NGS forensics: how to know if data is fabricated
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Comment: What does it mean single base resolution in sequencing?
by
jinyu
▴ 10
Thank you for your detail and great explanation. I do need more time to understand these. And there is still something compuzzling me. For …
Answer: Is it possible to bulk download files from GEO repository?
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Try using this library [GEOparse][1] [1]: https://github.com/guma44/GEOparse
Answer: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
OK. Problem solved. The problem was from my end. Thank you both for helping !!
Comment: NGS forensics: how to know if data is fabricated
by
Mensur Dlakic
★ 27k
Appreciate the suggestion, but that ship has sailed and reached the other shore. This happened 10+ years ago. To the best of my knowledge n…
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Files are not opening in any of the computer (ubuntu/windows). I rereun snpEff annotation but still output html files are having missing im…
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I reinstalled nodejs: > sudo apt-get install nodejs Its already up to date with version v10.19.0
Answer: NGS forensics: how to know if data is fabricated
by
Prash
▴ 280
Mensur, if I were you, I'd probably contact the CA directly and check with him whether they have reproduced the works recently. There coul…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 560
Working on it - it's actually a bit difficult. Low coverage of ribosomal proteins. Low coverage of housekeeping genes ...I'm trying to find…
Comment: NGS forensics: how to know if data is fabricated
by
noodle
▴ 560
I'm a bit against pubpeer - have you ever posted there? My gripe with them is that the posts are heavily moderated and EDITED to the point…
Comment: NGS forensics: how to know if data is fabricated
by
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8.4k
Thanks Mensur! I'd add that in 9 out of 10 cases, you won't receive a reply to a request for raw data. That's just how scientists are, does…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
I had downloaded the two files in a similar manner actually.
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
ok, i'll try to use fastp. I have only used trimmomatic and cutadapt till now and they dont identify on its own. Except the graph in fastqc…
Comment: How many reads for WGS Sequencing?
by
Ruqaiya
• 0
got it! even if i'm doing the assembly for paired end with both the files do i have set the threshold to 1000bp ?
Comment: NGS forensics: how to know if data is fabricated
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8.4k
i've been in our org trying to push such a detector, our use-case is much more limited: I want to make simulated eDNA libraries as real as …
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> What is the best method to test for differential abundance at the isoform level? Salmon returns TPM values instead of the counts which Li…
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