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1,000 results • Page
5 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
2
replies
283
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
17 days ago by
mropri
▴ 150
0
votes
0
replies
159
views
Input into WGCNA and Error on constructNetworks on RNA-Seq data - unique rownames
rownames
RNA-Seq
WGCNA
unique
17 days ago by
shasabhi1
• 0
0
votes
0
replies
148
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
18 days ago by
Nishat
• 0
0
votes
0
replies
176
views
what exactly is a k-mer table (remora)?
remora
basecall
18 days ago by
anne
• 0
1
vote
1
reply
197
views
Help/Direction Needed for Data Analysis of RNA
Sequencing
RNA-seq
DNA-Seq
updated 18 days ago by
dsull
★ 6.0k • written 18 days ago by
niruf
• 0
0
votes
0
replies
154
views
GWAS Phenotypes
GWAS
18 days ago by
solomoncharles77
▴ 90
0
votes
2
replies
345
views
GSEA analysis in R
GSEA
R
Arabidopsis
16 days ago by
Sudip
• 0
0
votes
0
replies
129
views
Add geno header to VariantAnnotation objects
nichenet
scRNA-seq
18 days ago by
QX
• 0
2
votes
5
replies
522
views
Where to find the homopolymer regions bed file for Hg002 genome?
simple-repeats
hg002
bed
homopolymer-regions
17 days ago by
Bikram Kumar
• 0
0
votes
2
replies
284
views
Statistical Advice Needed for RNAseq Data Analysis
Statistical-Significance
Genomics
RNA-seq
Data-Analysis
updated 18 days ago by
Ram
43k • written 18 days ago by
David
• 0
1
vote
2
replies
298
views
Can I compare kallisto counts from samples with different amount of reads?
RNA-seq
kallisto
17 days ago by
bioinfo
▴ 150
0
votes
1
reply
210
views
How to get the reference panel sites for TOPMed hg37 and 38
Imputation
updated 18 days ago by
bk11
★ 2.4k • written 19 days ago by
sinhas
• 0
0
votes
1
reply
228
views
merging Seurat objects after SCT
Seurat
SCT
updated 19 days ago by
Ram
43k • written 19 days ago by
michelle.swarovski
• 0
0
votes
1
reply
244
views
Two databases: Human Microbiome Project and MGnify
Microbiome
databases
updated 19 days ago by
GenoMax
142k • written 19 days ago by
haiying.kong
▴ 360
0
votes
2
replies
295
views
RNAseq 1 control 2 different treatment
RNA-seq
18 days ago by
matteo.levorato
• 0
1
vote
0
replies
153
views
Seeking Advice on Gene Ontology Analysis for Bulk RNA-Seq Data Without Control Samples
Gene-ontology
RNA-seq
R
updated 19 days ago by
Ram
43k • written 19 days ago by
Oscar
▴ 10
2
votes
0
replies
220
views
What are good Python models/packages to predict small molecula (SMILES) binding to proteins ?
SMILES
19 days ago by
Alexander
▴ 220
1
vote
6
replies
328
views
Do I need to go back and filter my long-reads?
alignment
nanopore
filtering
QC
ONT
updated 1 day ago by
GenoMax
142k • written 19 days ago by
eebloom
▴ 80
0
votes
0
replies
148
views
Automated internal stop codon checker
ORF
stopcodon
internal
virus
19 days ago by
Balazs Horvath
▴ 10
0
votes
0
replies
151
views
Repeat expansion identification tools for long-read data
fragilex
repeatexpansion
long-read
fmr1
19 days ago by
adarsh_pp
▴ 40
0
votes
0
replies
159
views
FreeBayes detection capacity
reads
freebayes
long
19 days ago by
quentinperriere
• 0
0
votes
2
replies
280
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
17 days ago by
DKA
▴ 40
0
votes
0
replies
172
views
Plotting heatmap of genes in each samples scRNA in Seurat
scRNA
heatmap
19 days ago by
Hien
• 0
0
votes
2
replies
315
views
Merging Outputs from plink --assoc and --hardy to Produce Table
PLINK
PANDAS
R
17 days ago by
Koketso
• 0
0
votes
0
replies
200
views
Novel cyclic peptide structure prediction
protein
structure-prediction
alphafold
peptide
updated 20 days ago by
Ram
43k • written 20 days ago by
menyawino
• 0
1
vote
3
replies
384
views
Ensembl gene id conversion
biomart
ensembl
updated 18 days ago by
ATpoint
82k • written 20 days ago by
naveedhasan2000
• 0
1
vote
2
replies
337
views
Extracting information from gff3 file produced by augustus
augustus
gff3
updated 18 days ago by
Istvan Albert
100k • written 20 days ago by
Jiang
• 0
0
votes
0
replies
201
views
Core SNP tree VS. concatenated core genome tree
phylogenetic
tree
SNP
21 days ago by
YiweiZhu
▴ 30
0
votes
2
replies
332
views
Help with understanding the identifier mapping tables in the backend of HUMAnN
metagenomics
metacyc
enzyme
biobakery
humann
21 days ago by
O.rka
▴ 710
0
votes
6
replies
588
views
PacBio adapters in transcriptome assembly from short read data?
adapter
transcriptome
sequencing
pacbio
vecscreen
19 days ago by
Dunois
★ 2.5k
4
votes
7
replies
589
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 20 days ago by
Ram
43k • written 21 days ago by
AHerik
▴ 20
0
votes
0
replies
199
views
SeuratDisk: including "counts" dataset in conversion to AnnData
Seurat
SeuratDisk
AnnData
updated 22 days ago by
Ram
43k • written 22 days ago by
roussine
▴ 10
0
votes
0
replies
189
views
I am getting more annotation hits from HOMER than I have actual peaks. Is that normal?
ATAC-seq
HOMER
22 days ago by
Ronin
• 0
4
votes
13
replies
942
views
RNAseq of primary tumor and metastases in two different organ
metastases
RNA-seq
DEG
R
updated 17 days ago by
BioinfGuru
★ 1.7k • written 23 days ago by
matteo.levorato
• 0
2
votes
1
reply
263
views
VEP annotation --per_gene allele choice
VEP
updated 22 days ago by
Ram
43k • written 22 days ago by
atariw
▴ 10
0
votes
2
replies
302
views
Are GeneExpression Subtype annotations removed from TCGA-GBM?
tcga-gbm
subtyping
tcga
updated 21 days ago by
Zhenyu Zhang
★ 1.2k • written 22 days ago by
Apollonia
• 0
1
vote
1
reply
257
views
RNA seq normalization and gene gene correlation
rna-seq
pearson-correlation
vst
updated 22 days ago by
Ram
43k • written 22 days ago by
Fish
• 0
0
votes
0
replies
194
views
Snakemake fails to find conda in PBS
snakemake
22 days ago by
yixinzeng
• 0
0
votes
0
replies
195
views
KaryoPlot: Gene coverage over centromeric regions
Gene
coverage
Centromere
Bedtools
22 days ago by
Mary
• 0
0
votes
0
replies
186
views
Protein stability analysis
mutation
analysis
22 days ago by
marco.barr
▴ 90
1
vote
4
replies
419
views
what is the normal range of htseq-count output for homo sapiens RNA-Seq
Transcriptomics
htseq-count
RNA-Seq
NGS
hisat2
updated 21 days ago by
BioinfGuru
★ 1.7k • written 22 days ago by
Morteza
• 0
3
votes
1
reply
278
views
how to change the gene header names in a fasta file?
fasta
bioawk
awk
seqkit
updated 22 days ago by
Ram
43k • written 22 days ago by
rj.rezwan
• 0
0
votes
0
replies
176
views
Multiple Spike-Ins
MeRIP
Spike-In
23 days ago by
Adam
▴ 30
0
votes
0
replies
166
views
Tools for Sequence Consensus
Consensus-Sequence
bacteria
updated 22 days ago by
Ram
43k • written 23 days ago by
Reno
• 0
2
votes
2
replies
287
views
DepMap: siRNA and CRSIPR discrepancy
DepMap
updated 22 days ago by
ATpoint
82k • written 23 days ago by
Shicheng Guo
★ 9.4k
1
vote
0
replies
165
views
phasing tumor long-reads
nanopore
ONT
haplotag
phasing
tumor
23 days ago by
eebloom
▴ 80
0
votes
3
replies
346
views
10x GEX and ADT data analysis in Seurat
Seurat
scRNA-seq
ADT
Cite-seq
GEX
updated 21 days ago by
ATpoint
82k • written 23 days ago by
gdfsnkfns
• 0
0
votes
4
replies
339
views
Questions about transfering wgs file to reference genome file
fasta
cram
genome
23 days ago by
me
• 0
0
votes
2
replies
281
views
WGCNA
PCA
WGCNA
EIGENGENE
22 days ago by
rajasekargutha
▴ 60
0
votes
3
replies
287
views
BLASTP web- <20aa peptides- interpreting results/ minimum E value?
blast
peptide
blastp
alignment
updated 22 days ago by
GenoMax
142k • written 23 days ago by
neish
• 0
1,000 results • Page
5 of 20
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This the tool still problematic?
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You need to change this configuration file to point it to the location where the aligner executable can be found. So as an example followi…
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The expression levels do not change but the way that you have parametrized the expression levels does change. The two design matrices give…
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