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27 results • Page
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News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
scRNA
Machinelearning
GenerativeAI
7 hours ago by
Claire Watson
▴ 60
0
votes
0
replies
74
views
News:
Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis
Statistics
R
updated 20 hours ago by
Ram
43k • written 1 day ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
112
views
News:
8th Berlin Summer School in NGS Data Analysis - Apply Now
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
updated 20 hours ago by
Ram
43k • written 2 days ago by
David Langenberger
11k
0
votes
0
replies
109
views
News:
hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models
GLM
R
updated 1 day ago by
Ram
43k • written 2 days ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
114
views
News:
Interested in Spatial Omics?
Bioconductor
Spatial-Omics
Spatial-Transcriptomics
updated 3 days ago by
Ram
43k • written 3 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
82
views
News:
Online course: DNA methylation
Pacbio
Nanopore
DnaMethylation
Evolution
4 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
130
views
News:
upcoming online statistical courses
Statistics
R
Data-Analysis
updated 5 days ago by
Ram
43k • written 5 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
189
views
News:
Online course: Meta-analysis in R
Meta-Analysis
Statistics
R
updated 8 days ago by
Ram
43k • written 8 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
175
views
News:
Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo
Individual-Based-Models
Agent-Based-Models
updated 8 days ago by
Ram
43k • written 8 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
173
views
News:
Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop
RNA-seq
nextflow
DNA-seq
updated 10 days ago by
Ram
43k • written 10 days ago by
David Langenberger
11k
0
votes
0
replies
142
views
News:
Deadline Approaching: PETs for Public Health Challenge
privacy
public-health-challenge
updated 11 days ago by
Ram
43k • written 11 days ago by
polarise
▴ 380
0
votes
0
replies
177
views
News:
Online course: Network Analysis in R
NetworkAnalyis
R
12 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
183
views
News:
Online course: Meta-analysis in R
Meta-Analysis
R
updated 14 days ago by
Ram
43k • written 15 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
128
views
News:
Online Live Course: Introduction to Machine Learning in R
Rstats
TScourses
Rlang
Rproject
updated 15 days ago by
Ram
43k • written 15 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
123
views
News:
Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM
Rlang
Rstats
Rproject
updated 15 days ago by
Ram
43k • written 15 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
123
views
News:
Online Course Introduction to Network Analysis and Modelling
Python
Network-Analysis
updated 15 days ago by
Ram
43k • written 15 days ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
114
views
News:
Course Functional Programming with R
Rstats
TScourses
Rproject
KeepLearning
Rlang
16 days ago by
Transmitting Science communication
▴ 70
12
votes
2
replies
443
views
News:
8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop
RNA-Seq
DNA-Seq
Illumina
16 days ago by
David Langenberger
11k
2
votes
0
replies
116
views
News:
Online course: Genome Annotation
Genome-Assembly
RNA-seq
Genome-Annotation
updated 16 days ago by
Ram
43k • written 16 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
119
views
News:
Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics
vegan
R
updated 18 days ago by
Ram
43k • written 18 days ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
173
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
updated 18 days ago by
Ram
43k • written 20 days ago by
carlopecoraro2
★ 2.5k
8
votes
2
replies
777
views
News:
FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell
sequencing
21 days ago by
David Langenberger
11k
0
votes
0
replies
143
views
News:
Online course: Food Traceability Using Genomic Tools
Nanopore
Genomic-Tools
Illumina
Food-Traceability
updated 22 days ago by
Ram
43k • written 23 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
145
views
News:
Online course: Eukaryotic Metabarcoding
Metabarcoding
Biodiversity
R
eDNA
25 days ago by
carlopecoraro2
★ 2.5k
3
votes
2
replies
566
views
News:
Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling
endocrinology
ML
systems-biology
machine-learning
28 days ago by
Johannes W. Dietrich
• 0
0
votes
0
replies
204
views
News:
Online course: Reproducibility in Bioinformatics
Singularity
Version-Control
Docker
Containers
updated 28 days ago by
Ram
43k • written 28 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
167
views
News:
Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic
Bacterial-Genomics
Pangenomics
updated 28 days ago by
Ram
43k • written 28 days ago by
carlopecoraro2
★ 2.5k
27 results • Page
1 of 1
Recent Votes
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
how to combine multiple RNAseq count files into a single dataframe in R and unix
Answer: genome assembly records not present in assembly_summary.txt
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
A: How to process (seems) Agilent microarrry data?
Comment: genome assembly records not present in assembly_summary.txt
Answer: genome assembly records not present in assembly_summary.txt
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GenoMax
141k
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rheab1230
▴ 140
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★ 1.7k
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bk11
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Recent Replies
Comment: Low mapping rate with Salmon
by
i.sudbery
19k
Take your STAR alignment and sum all the counts for each gene. You can either do this by providing an annotation to STAR, or by running fea…
Comment: How to convert plink files to Hapmap Format
by
bk11
★ 2.4k
If you run your data with plink 2.0, you will have ERRCODE column in your result file showing the reason behind "NA" p-value. https://www.b…
Comment: genome assembly records not present in assembly_summary.txt
by
sapuizait
▴ 10
jesus its in the Genbank file and I was looking at the refseq! I m such a moron - thanks for pointing it out -sorry about that :(
Comment: ScRNA data question
by
bk11
★ 2.4k
I wonder how the `Vlnplots` will look if you normalize the data using `NormalizeData()` function in `Seurat`. The flat line in your plot ar…
Comment: Low mapping rate with Salmon
by
GenoMax
141k
> Does that mean that the reads that are not mapped to my trascriptome are not exons/coding genes? Reads are likely aligning in regions wh…
Comment: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
by
cmdcolin
★ 3.8k
the gencode link is broken now but here is a back up of that blogpost on archive https://web.archive.org/web/20130618221342/http://gencodeg…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
I'll try to make the decoy file again but I remember you also told me that it is only recommended and not mandatory for running `salmon`. I…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
For doing this, should I just look at the log.out.file?
Answer: Heatmap and rna-seq
by
pinheirofabiano
▴ 10
install.packages("pheatmap") library(pheatmap) setwd("/Users/data_analysis/results") data <- read.table(file…
Comment: Low mapping rate with Salmon
by
Patadu94
• 0
Thanks for the link GenoMax. But I was wondering, should not alignment and mapping have a similar rate and thus be correlated? In my case I…
Answer: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
bedtools intersect \ -a <(sort -t $'\t' -k1,1 -k2,2n A.bed) \ -b <(awk '{X=250000;P=int($2);printf("%s\t%d\…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
• 0
The command lines I wrote out for you are the ones I actually used. My original reference to bedtools intersect was because I assumed the b…
Comment: ScRNA data question
by
starswillfade
▴ 10
I just thought it was weird that considering each dot is a cell their expressions were all on a single line instead of being spread out lik…
Comment: ScRNA data question
by
starswillfade
▴ 10
![enter image description here][1] I am already using Seurat V5 I think. I am using SCTransform as it was recommended by the seurat page. I…
Answer: genome assembly records not present in assembly_summary.txt
by
GenoMax
141k
Can you clarify what `metainfo` you are referring to? The accession that you refer to does exist in [**GenBank assembly_summary file**][1…
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