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901 results • Page 5 of 19
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News: Announcing the Genetic Engineering Attribution Challenge!
machine-learning data-science competition
updated 10 months ago by 43k • written 3.7 years ago by ▴ 10
0
votes
0
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829
views
News: :: FINAL CALL :: Only 2 seats left - RNA-Seq Data Analysis Workshop for Beginners in Leipzig, Germany
NGS RNA-Seq transcriptomics
updated 10 months ago by 43k • written 3.8 years ago by 11k
0
votes
0
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648
views
News: Software: BIRCH Bioinformatics System 3.70
alignment Assembly sequence genome RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ▴ 460
0
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0
replies
800
views
News: Training - Introduction to Bioinformatics for beginners
assembly SNP RNA-Seq sequencing
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
votes
0
replies
750
views
News: Training in Computational Drug Design and Discovery @NIH
Computational-Biology RNA-Seq Drug-Design Biomedical
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
0
votes
0
replies
654
views
News: Upcoming online UC Davis Bioinformatics Core workshops
Assembly RNA-Seq single-cell
updated 10 months ago by 43k • written 3.8 years ago by ▴ 30
0
votes
0
replies
867
views
News: Training - RADseq data analysis
SNP RADseq Stacks
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
replies
827
views
News: Training in Bioinformatics for Beginners @ NIH
NGS Biomedical Training Biomedical-Informatics
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
0
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0
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725
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
R-Platform RGraphs Biomedical NGS
updated 10 months ago by 43k • written 3.8 years ago by ▴ 140
6
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7
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2.2k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 10 months ago by 43k • written 3.8 years ago by ▴ 40
0
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0
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798
views
News: Cellosaurus release 35 is available
knowledgebase cell-line
updated 10 months ago by 43k • written 3.8 years ago by ▴ 120
0
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0
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954
views
News: NGS Data Analysis Trainings (Classroom and Online)
RNA-Seq Training DNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by 11k
0
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0
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821
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News: Summer School in Bioinformatics (ONLINE, 7th-11th September 2020)
Assembly sequence genome SNP RNA-Seq
updated 10 months ago by 43k • written 3.8 years ago by ★ 2.5k
0
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0
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1.1k
views
News: ONLINE COURSE. Eukaryotic genome assembly USING Pacbio and Hi-C
assembly pacbio long-reads HI-C
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
votes
0
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914
views
News: A Practical Introduction to NGS Data Analysis - America Online Edition
NGS workshop DNA-Seq
updated 10 months ago by 43k • written 3.9 years ago by 11k
0
votes
0
replies
654
views
News: Course on Deep Learning
Deep-Learning Machine-Learning Python
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
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0
replies
668
views
News: Webinar in next hour : Updated BLAST RefSeq rRNA databases for identification and phylogenetic analysis
blast
updated 10 months ago by 43k • written 3.9 years ago by 141k
0
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0
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525
views
News: Final Reminder for the precisionFDA Truth Challenge V2 Submissions
genome
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
0
votes
0
replies
794
views
News: Statistical Computing for Environmental Science with R and Rstudio
Rstudio online-course R-project statistics
updated 10 months ago by 43k • written 3.9 years ago by ▴ 70
0
votes
0
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768
views
News: Introduction to Bayesian Inference in Practice
statistics MCMC R Bayesian Python
updated 10 months ago by 43k • written 3.9 years ago by ▴ 70
1
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0
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831
views
News: Utrecht Bioinformatics Center: online seminars
DNA-damage Utrecht epigenomics
updated 10 months ago by 43k • written 3.9 years ago by ▴ 230
1
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0
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1.1k
views
News: ONLINE COURSE Introduction to R for ecologists and evolutionary biologists (IRFB04) This course will be delivered live
R
updated 10 months ago by 43k • written 3.9 years ago by ▴ 110
1
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3
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1.2k
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News: 4th Berlin Summer School in NGS Data Analysis - October 5-9, 2020
NGS RNA-Seq DNA-Seq
updated 10 months ago by 43k • written 4.2 years ago by 11k
0
votes
0
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602
views
News: Extension Announcement for the precisionFDA Truth Challenge V2
genome
updated 10 months ago by 43k • written 3.9 years ago by ▴ 150
2
votes
0
replies
569
views
News: Introduction to NGS data analysis - ONLINE 7th-11th September 2020
Assembly RNA-Seq next-gen-sequencing
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
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0
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737
views
News: Last chance to register for online RNA-Seq Workshop June 1-4
RNA-Seq
updated 10 months ago by 43k • written 3.9 years ago by ▴ 30
0
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0
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740
views
News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
2
votes
0
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673
views
News: Introduction to Deep Learning; ONLINE 28th September - 1st October
Machine-Learning Deep-Learning Python
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
2
votes
0
replies
665
views
News: Online course - low-coverage whole-genome sequencing data analysis
SNP
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
0
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0
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661
views
News: Training in Molecular Modeling and Molecular Dynamics @NIH, July 21 - 24, 2020
Dynamics RNA-Seq Modeling next-gen
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
0
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0
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750
views
News: Training in Programming for Biomedical Researchers @NIH, July 14 - 17, 2020
Researchers Biomedical Programming
updated 10 months ago by 43k • written 3.9 years ago by ▴ 140
2
votes
0
replies
703
views
News: Interested in Machine Learning?
Machine-Learning R
updated 10 months ago by 43k • written 3.9 years ago by ★ 2.5k
1
vote
0
replies
842
views
News: Ensembl launches COVID-19 resource
genome coronavirus COVID-19 ensembl SARS-CoV-2
updated 10 months ago by 43k • written 3.9 years ago by ▴ 330
0
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0
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583
views
News: The Veterans Health Administration (VHA) Innovation Ecosystem and precisionFDA are launching the COVID-19 Risk Factor Modeling Challenge on June 1st
R
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
8
votes
8
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2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 10 months ago by 43k • written 4.2 years ago by 100k
0
votes
0
replies
792
views
News: Training in Statistical Analysis using R @NIH, July 8 - 10, 2020
R Biomedical next-gen Statistical-analysis
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
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512
views
News: New Datasets Available and Extension Announcement for the precisionFDA Truth Challenge V2
R
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
2
votes
4
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1.2k
views
News: Course ONLINE - RNAseq data analysis with R and Bioconductor (15-19 June)
R RNA-seq Bioconductor
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
replies
722
views
News: Training in Rosetta for Molecular Modeling and Design @NIH,June 22-25,2020
Data-analysis Modeling RNA-Seq Molecular-design
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
721
views
News: Intermediate Python for Bioinformatics 2020
python data-analysis
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
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0
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696
views
News: One Week Reminder for the precisionFDA Gaining New Insights by Detecting Adverse Event Anomalies Using FDA Open Data Challenge
R
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
0
votes
0
replies
709
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis@NIH, June 9-12,2020
RNA-Seq Biomedical next-gen
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
659
views
News: Training in Variant Analysis@NIH,June 2-5, 2020
Variant-analysis Genotype Variant-calling next-gen
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
replies
672
views
News: Gene Ontology Virtual User Meeting
Ontology GO Enrichment Gene-Ontology
updated 10 months ago by 43k • written 4.0 years ago by • 0
0
votes
0
replies
568
views
News: Check Out The Upcoming Federal Crowdsourcing Webinar Series: A precisionFDA Strike for Public Health
genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
0
votes
1
reply
1.4k
views
News: Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS DNA-seq Workshop
updated 10 months ago by 43k • written 4.0 years ago by 11k
0
votes
0
replies
888
views
News: Training in Metagenomics Data Analysis, May 26-29,2020
training Metagenomics next-gen Data-analysis
updated 10 months ago by 43k • written 4.0 years ago by ▴ 140
0
votes
0
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743
views
News: The precisionFDA Truth Challenge V2 is now Live!
genome
updated 10 months ago by 43k • written 4.0 years ago by ▴ 150
2
votes
0
replies
578
views
News: Course online - Introduction to Deep Learning; 28th September - 1st October
Deep-Learning Python
updated 10 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
votes
0
replies
812
views
News: bioinfo-core workshop at virtual ISMB 2020
conferences ismb
updated 10 months ago by 43k • written 4.0 years ago by 5.3k
901 results • Page 5 of 19
Recent Votes
C: How do I ask a question on Biostars?
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Answer: Source other conda environments in a nextflow pipeline when nextflow itself is i
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
Comment: How to calculate identity percentage between proteins contained in a FASTA file?
Answer: How to use limma to find differentially expressed genes in response to a continu
Answer: How to use limma to find differentially expressed genes in response to a continu
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Recent Replies
Comment: Programmatically retrieving positions of protein active site residues by Wayne ★ 2.0k
Wow, I was shocked at this AI answer that looks to be a good start for using UniProt. Sharing it in case it is useful. (It will work in ses…
Comment: NGS forensics: how to know if data is fabricated by noodle ▴ 570
> Can you clarify what you mean by "100% of reads pass cutadapt, even > though 70% of reads contain adapters and get trimmed. The header o…
Comment: Software to separate reads from different individuals by GenoMax 141k
If you have independent information available (e.g. genotype data for both individuals) then you *may* be able to assign reads based on the…
Answer: Extract protein sequence by Matthias Zepper 4.5k
You didn't mention what kind of organism you are working with and what kind of protein you are looking for? If it happens to be a microbia…
Comment: How to use limma to find differentially expressed genes in response to a continu by pairedttest ▴ 10
Thank you Gordon for your expertise. One question that I have now that I have a list of DE genes is how to interpret logFC of this continuo…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt by salias • 0
Yes I plan to use QIIME2, but I'm Cutadapting outside QIIME so its easier to MultiQC without importing/unzipping QZAs (and QIIME2 importing…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt by GenoMax 141k
> 3' adapters were removed aprox. 90 times each one, so there sohuld not be read-through at all here Then you have data that has poor Q sc…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt by salias • 0
Following your advice, I checked the primer and adapters sequences and edited the question accordingly
Comment: How should I make kallisto indexes? by dsull ★ 5.9k
We can't phase them out per se, because ``kallisto index`` is still the engine responsible for creating the index under the hood (and there…
Comment: When to use .vcf or .gvcf files from GATK HaplotypeCaller? by Medhat 9.7k
"./." in your gVCF files typically indicates a lack of information or uncertainty about the genotype at that particular position. This co…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt by salias • 0
Fungal ITS2 region (length is really variable so read-through can be an issue)
Answer: Is it possible to bulk download files from GEO repository? by noodle ▴ 570
Also try the NCBI AWS bucket transfer tool. It's extremely convenient, however it's not instantaneous and you need to have a (paid) AWS acc…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt by GenoMax 141k
Check a random sampling of reads to make sure the adapters are being removed. You may also want to blast a few reads to ensure that there i…
Comment: FastQC Quality per tile and per sequence behaving strange after using Cutadapt by salias • 0
Many thanks for your comment. If read-through is happening, shouldn't Cutadapt being taking care of that there? I provided to the Cutadapt …
Comment: How should I make kallisto indexes? by bioinfo ▴ 150
Thank you. I will read the documentation you attached. Are you going to slowly phase out the not kb ref commands? Also, does the t2g.txt fi…
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