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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 5 days ago by 1.6k • written 6.3 years ago by 96k
45
votes
19
replies
5.6k
views
8 follow
News: Gamestorming For Bioinformatics
gamestorming
updated 25 days ago by 38k • written 10.5 years ago by 27k
15
votes
18
replies
7.3k
views
6 follow
News: New Free Community Tutorial Website For Bioinformatics Learning
ChIP-seq genome snp RNA-seq
updated 20 days ago by 38k • written 9.7 years ago by ▴ 610
19
votes
11
replies
6.3k
views
News: Solid Software Tools: Denovo Assembly/Xsq Tools Pipeline Mirrored At Biostar
SOLID
updated 25 days ago by 38k • written 10.5 years ago by 96k
6
votes
9
replies
3.6k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 13 days ago by 38k • written 8.7 years ago by 153k
17
votes
9
replies
3.2k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 19 days ago by 38k • written 9.5 years ago by 153k
0
votes
9
replies
1.9k
views
News: Practical Genomics: From Biology to Biostatistics Workshop (Baltimore, MD)
workshop
updated 13 days ago by 38k • written 8.7 years ago by 10k
12
votes
8
replies
3.0k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 20 days ago by 38k • written 9.7 years ago by 9.9k
12
votes
8
replies
6.4k
views
News: rRNA Depletion / Poly-A Selection Responsible for RNA-seq Bias
rRNA-depletion RNA-seq-bias
updated 13 days ago by 38k • written 8.7 years ago by ▴ 640
6
votes
7
replies
4.8k
views
News: Illumina Nextseq 500 And Hiseq X Ten: Newer Tech Lowering Cost Per Mbp
Illumina
updated 17 days ago by 38k • written 9.2 years ago by ▴ 640
25
votes
7
replies
5.8k
views
News: Pubmed Commons : A System That Enables Researchers To Share Their Opinions About Scientific Publications
ncbi pubmed
updated 18 days ago by 38k • written 9.4 years ago by 153k
23
votes
7
replies
4.0k
views
News: Research accounts on GitHub
github git
updated 13 days ago by 38k • written 8.9 years ago by 153k
21
votes
7
replies
7.1k
views
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
transcript RNA-seq gene
updated 24 days ago by 38k • written 10.3 years ago by ▴ 250
12
votes
7
replies
3.3k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 10 days ago by 38k • written 8.4 years ago by ★ 5.2k
24
votes
7
replies
4.0k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 20 days ago by 38k • written 9.7 years ago by 153k
8
votes
6
replies
3.7k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 24 days ago by 38k • written 10.2 years ago by 9.9k
17
votes
6
replies
8.4k
views
News: Final registration deadline: September 15th - Bioinformatics Hands-On NGS Data Analysis Workshops 2014
methylation RNA-seq
updated 13 days ago by 38k • written 9.0 years ago by 9.9k
32
votes
6
replies
12k
views
7 follow
News: Ncbi Releases Entrez Direct, The Entrez Utilities On The Unix Command Line
ncbi genbank pubmed command-line entrez
updated 17 days ago by 38k • written 9.1 years ago by 153k
0
votes
5
replies
1.8k
views
News: Ashg 2012 Biostar Meetup
ASHG
updated 24 days ago by 38k • written 10.4 years ago by 12k
9
votes
5
replies
8.2k
views
News: A New Rest Based Api For Kegg: Kyoto Encyclopedia Of Genes And Genomes
kegg api
updated 24 days ago by 38k • written 10.3 years ago by ▴ 50
4
votes
4
replies
2.6k
views
News: Join The Dnanexus Developer Program
api cloud
updated 20 days ago by 38k • written 9.8 years ago by ▴ 30
9
votes
4
replies
3.4k
views
News: Conference Announcement - Camda 2013
conference classification
updated 24 days ago by 38k • written 10.2 years ago by ▴ 240
2
votes
4
replies
1.7k
views
News: Reminder: Igb Tutorial Starts In 30 Minutes
visualization genome-browser RNA-seq
updated 19 days ago by 38k • written 9.5 years ago by ★ 2.3k
10
votes
4
replies
558
views
News: RNA-Seq Data Analysis Workshop - Join us in Berlin, Germany from March 27-30, 2023!
NGS transcriptomics workshop
updated 3 days ago by ▴ 30 • written 5 weeks ago by 9.9k
31
votes
4
replies
6.1k
views
News: Rosalind: A Novel Bioinformatics Education Platform
education
updated 25 days ago by 38k • written 10.5 years ago by ▴ 310
4
votes
4
replies
1.4k
views
News: VCFclin working group
vcfclin
updated 13 days ago by 38k • written 8.9 years ago by ▴ 30
7
votes
4
replies
2.4k
views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated 24 days ago by 38k • written 9.9 years ago by 11k
15
votes
4
replies
2.3k
views
News: Call For Nominations: 2013 Benjamin Franklin Award
benjamin-franklin-award award
updated 24 days ago by 38k • written 10.1 years ago by 153k
5
votes
3
replies
333
views
News: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
nf-core pipeline Nextflow
updated 3 hours ago by ▴ 220 • written 4 weeks ago by 3.3k
3
votes
3
replies
3.6k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 26 days ago by 38k • written 10.6 years ago by 96k
3
votes
3
replies
2.1k
views
News: Innocentive Challenge: Identify Organisms From A Stream Of Dna Sequences And Get $1,000,000
ngs
updated 23 days ago by 38k • written 9.9 years ago by ▴ 830
5
votes
3
replies
1.8k
views
News: Nhgri Meeting About Human Variation Analysis Live Streaming [Now Done]
next-gen exome variation
updated 25 days ago by 38k • written 10.5 years ago by 11k
15
votes
3
replies
6.4k
views
News: Top Bioinformatics Contributions Of 2013
bioinformatics
updated 18 days ago by 38k • written 9.3 years ago by ★ 1.1k
2
votes
3
replies
2.8k
views
News: Summer Course On Analyzing Next-Generation Sequencing Data, June 10-20, Kellog Biological Station, Michigan State University
education
updated 24 days ago by 38k • written 10.1 years ago by 96k
4
votes
3
replies
2.0k
views
News: India Recently Started Personal Genome Profiling, Commercially.
genome-profiling
updated 23 days ago by 38k • written 9.8 years ago by ▴ 960
7
votes
3
replies
4.2k
views
News: Pathway Commons 2 - Search And Visualize Public Biological Pathway Information. Single Point Of Access.
api cytoscape
updated 18 days ago by 38k • written 9.3 years ago by ★ 1.2k
22
votes
3
replies
2.7k
views
News: Biostar: 10,000 Question Milestone
meta
updated 23 days ago by 38k • written 9.8 years ago by 96k
9
votes
3
replies
3.0k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 18 days ago by 38k • written 9.2 years ago by 153k
3
votes
2
replies
2.8k
views
News: Bioinformatics On Windows And Windows Cloud
windows cloud
updated 24 days ago by 38k • written 10.3 years ago by ▴ 20
0
votes
2
replies
1.4k
views
News: M.Phil Program in Bioinformatics
education career
updated 2 days ago by 38k • written 7.4 years ago by • 0
2
votes
2
replies
1.9k
views
News: Briefings In Bioinformatics International, Interdisciplinary, Multi-Level Bioinformatics Training And Education
education
updated 19 days ago by 38k • written 9.5 years ago by 153k
3
votes
2
replies
2.4k
views
News: Samtools/htslib v1.2 released
htslib samtools bcftools
updated 4 days ago by 38k • written 8.1 years ago by 103k
0
votes
2
replies
265
views
News: Course - Metagenomics, metatranscriptomics, and multi'omics for microbial community Studies
Metagenomics Metatranscriptomics Multiomics
updated 2 days ago by 38k • written 2 days ago by ★ 2.3k
0
votes
2
replies
1.9k
views
News: Seqnews.Net: Discover And Share News On Next-Generation Sequencing
next-gen-sequencing
updated 24 days ago by 38k • written 10.3 years ago by 9.9k
6
votes
2
replies
1.6k
views
News: Belly Button Biodiversity Project Requests Your Analysis
biodiversity project
updated 24 days ago by 38k • written 10.3 years ago by 11k
13
votes
2
replies
2.7k
views
News: A Summary Of All Encode Related News On The Openhelix Blog: Encode Floods The News
encode
updated 25 days ago by 38k • written 10.5 years ago by 96k
8
votes
2
replies
648
views
News: Save time and money through improved onboarding of your NGS data scientists
NGS data-analysis
updated 2 days ago by 38k • written 3.2 years ago by 9.9k
11
votes
2
replies
3.4k
views
News: Coursera: Computational Molecular Evolution
course
updated 23 days ago by 38k • written 9.8 years ago by 153k
5
votes
2
replies
3.4k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 19 days ago by 38k • written 9.4 years ago by ★ 2.3k
3
votes
2
replies
3.5k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 24 days ago by 38k • written 10.2 years ago by 20k
152 results • Page 1 of 4
Recent Votes
C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
unplaced, unlocalized, ... scaffolds from hg19 to GRCh38
C: extracting heterozygous snp from a vcf file
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages
Answer: Where do find virulence gene information in a gff/gtf file?
Comment: split fasta file to train deep learning model
Criteria for filtering contigs after spades assembly
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Popular Question to santos48 ▴ 40
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Recent Replies
Comment: Nextflow Stringtie: command not found Error by ATpoint 70k
It's bad practice to delete posts that received an answer ( = a user invested time - in this case me but it of course applies generally). D…
Comment: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil by EkHe • 0
Hi @juke34, if you're able, can you please clarify something for me (based on the answer you've given here)? Thanks a lot in advance. I als…
Answer: Practical Haplotype Graph -- Pathing Error by lcj34 ▴ 220
FYI - The latest PHG docker version (tag 1.4) has a fix for this issue.
Comment: Nextflow: No space left on device, process using output directory as input? by Maxime Garcia ▴ 220
Nextflow should only link inputs (unless stated otherwise), so even if you use outdir as input it should not be much of an issue, but still…
Comment: Problem in converting SAM to BAM file by DROP SEQ by lieven.sterck 14k
Hi https://www.biostars.org/u/126271/, welcome. it might be good to add some more info on your "question". Now it only shows an error mes…
Comment: Trying to install Roary with Conda results in error message by tobiwan • 0
Thank you for your answer I'm using Ubuntu 22.04.2 LTS, command line used: conda install roary. Or do you need a screenshot of the whole …
Comment: Nextflow: No space left on device, process using output directory as input? by colindaven 4.5k
Yes, don't use the outdir as an input. You might get infinite loops.
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by wangjincheng • 0
I tried unzipped file, it shows the same error
Comment: UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid by Pierre Lindenbaum 153k
> use python package to load and analysis vcf.gz files looks like it doesn't like gzipped file. Are you sure this software can read gzip…
Comment: Trying to install Roary with Conda results in error message by ATpoint 70k
This cannot be answered. Add your command line and operating system.
Comment: split fasta file to train deep learning model by shenwei356 7.9k
shuffle the sequences, with a rand seed 1. seqkit shuffle --two-pass --rand-seed 1 hairpin.fa -o hairpin.s1.fa testing data …
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
I'm trying to split my file in two, using Seqkit, but it is not working.. using the command sample, I can generate a file that contains 80%…
Comment: split fasta file to train deep learning model by pinheirofabiano ▴ 10
thank you very much for your comment, @Mensur My file is just a list of peptides, not a complete genome
Comment: March 13-16: Virtual Nextflow and nf-core training event in 5 languages by Maxime Garcia ▴ 220
All the videos are now online and organized in 5 different playlists on the nf-core youtube channel: https://www.youtube.com/@nf-core/playl…
Answer: What is the difference between agilent_wholegenome and agilent_wholegenome_4x44k by Mike Smith ★ 2.0k
We can take a look at the content of those three attributes to try and figure this out. Here's some code to extract each set of Agilent ID…
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