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News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.7k • written 7.4 years ago by 100k
2
votes
0
replies
67
views
News: course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics SNPs LocalAdaptation GIS
20 hours ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
113
views
News: Online course: Introduction to Deep Learning
Python Deep-Learning Convolutional-Neural-Network Machine-Learning
updated 1 day ago by 43k • written 1 day ago by ★ 2.5k
0
votes
0
replies
109
views
News: Online course. -Time series analysis and Forecasting in R
Time-Series Forecasting R Stastics
3 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
252
views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering Spatial-transcriptomics
updated 3 days ago by • 0 • written 4 days ago by ▴ 10
0
votes
0
replies
111
views
News: Online course: Bioinformatic analysis of transposable elements
GenomeAssembly Transcriptomics TransposableElements ManualCuration
5 days ago by carlopecoraro2 ★ 2.5k
1
vote
2
replies
1.1k
views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
5 days ago by Zhenyu Zhang ★ 1.2k
0
votes
0
replies
140
views
News: Cellosaurus release 49 is available
cell biocuration line database news knowledgebase
7 days ago by Amos Bairoch ▴ 120
0
votes
0
replies
109
views
News: Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding Programming R
updated 7 days ago by 43k • written 8 days ago by ★ 2.5k
0
votes
0
replies
171
views
News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 10 days ago by 43k • written 10 days ago by • 0
0
votes
0
replies
136
views
News: Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis Statistics R
updated 10 days ago by 43k • written 10 days ago by ★ 2.5k
0
votes
1
reply
298
views
News: FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq variant-calling RNA-seq illumina transcriptomics
10 days ago by David Langenberger 11k
0
votes
0
replies
125
views
News: Online course: Genome Annotation
Genome-Assembly Genome-Annotation
11 days ago by carlopecoraro2 ★ 2.5k
3
votes
0
replies
228
views
News: Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy Generative-AI scRNA Machine-Learning
updated 13 days ago by 43k • written 14 days ago by ▴ 60
0
votes
0
replies
177
views
News: Master Meta-analysis with R (May 13-16) - Online!
Meta-Analysis Statistics R
updated 14 days ago by 43k • written 14 days ago by ★ 2.5k
0
votes
0
replies
135
views
News: hands-on introduction to generalized linear models (GLMs) using R
Generalized-Linear-Models GLM R
updated 15 days ago by 43k • written 16 days ago by ★ 2.5k
3
votes
0
replies
144
views
News: Interested in Spatial Omics?
Bioconductor Spatial-Omics Spatial-Transcriptomics
updated 17 days ago by 43k • written 17 days ago by ★ 2.5k
0
votes
0
replies
106
views
News: Online course: DNA methylation
Pacbio Nanopore DnaMethylation Evolution
18 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
153
views
News: upcoming online statistical courses
Statistics R Data-Analysis
updated 19 days ago by 43k • written 19 days ago by ★ 2.5k
0
votes
0
replies
215
views
News: Online course: Meta-analysis in R
Meta-Analysis Statistics R
updated 22 days ago by 43k • written 22 days ago by ★ 2.5k
0
votes
0
replies
198
views
News: Course - Agent-Based Modelling Using NetLogo - University of Lodz, Poland
Netlogo Individual-Based-Models Agent-Based-Models
updated 22 days ago by 43k • written 22 days ago by ★ 2.5k
0
votes
0
replies
196
views
News: Final Call - Bioinformatics Pipeline Development with Nextflow (May 27-29, 2024)
workshop RNA-seq nextflow DNA-seq
updated 23 days ago by 43k • written 24 days ago by 11k
0
votes
0
replies
161
views
News: Deadline Approaching: PETs for Public Health Challenge
privacy public-health-challenge
updated 24 days ago by 43k • written 25 days ago by ▴ 380
0
votes
0
replies
196
views
News: Online course: Network Analysis in R
NetworkAnalyis R
26 days ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
201
views
News: Online course: Meta-analysis in R
Meta-Analysis R
updated 28 days ago by 43k • written 28 days ago by ★ 2.5k
1
vote
0
replies
146
views
News: Online Live Course: Introduction to Machine Learning in R
Rstats TScourses Rlang Rproject
updated 29 days ago by 43k • written 29 days ago by ▴ 70
2
votes
0
replies
142
views
News: Online Course Generalised Additive Mixed Models (GAMM): modelling space-time correlation structures
GAMM Rlang Rstats Rproject
updated 29 days ago by 43k • written 29 days ago by ▴ 70
2
votes
0
replies
141
views
News: Online Course Introduction to Network Analysis and Modelling
Python Network-Analysis
updated 29 days ago by 43k • written 29 days ago by ▴ 70
2
votes
0
replies
129
views
News: Course Functional Programming with R
Rstats TScourses Rproject KeepLearning Rlang
4 weeks ago by Transmitting Science communication ▴ 70
12
votes
2
replies
495
views
News: 8th Berlin Summer School in NGS Data Analysis (June 10-14, 2024) - already half booked
Workshop RNA-Seq DNA-Seq Illumina
4 weeks ago by David Langenberger 11k
2
votes
0
replies
139
views
News: Online course: Genome Annotation
Genome-Assembly RNA-seq Genome-Annotation
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
0
votes
0
replies
136
views
News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 4 weeks ago by 43k • written 4 weeks ago by ★ 2.5k
1
vote
0
replies
193
views
News: Landscape Genomics course in Switzerland
LFMM Landscape-Genomics Sambada R Local-Adaptation
8 days ago by carlopecoraro2 ★ 2.5k
8
votes
2
replies
828
views
News: FINAL CALL - Single-Cell RNA-Seq Data Analysis: A Practical Introduction (May 6-8, 2024 in Berlin)
single-cell sequencing
5 weeks ago by David Langenberger 11k
0
votes
0
replies
165
views
News: Online course: Food Traceability Using Genomic Tools
Nanopore Genomic-Tools Illumina Food-Traceability
updated 5 weeks ago by 43k • written 5 weeks ago by ★ 2.5k
0
votes
0
replies
162
views
News: Online course: Eukaryotic Metabarcoding
Metabarcoding Biodiversity R eDNA
5 weeks ago by carlopecoraro2 ★ 2.5k
3
votes
2
replies
622
views
News: Announcement: Research Topic "Mechanistic, Machine Learning and Hybrid Models of the 'Other' Endocrine Regulatory Systems in Health and Disease", Vol…
mathematical-modelling endocrinology ML systems-biology machine-learning
5 weeks ago by Johannes W. Dietrich • 0
0
votes
0
replies
222
views
News: Online course: Reproducibility in Bioinformatics
Singularity Version-Control Docker Containers
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
186
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 6 weeks ago by 43k • written 6 weeks ago by ★ 2.5k
0
votes
0
replies
186
views
News: Online course: Introduction to GWAS
GWAS Imputation StatisticalPower
6 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
176
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
167
views
News: Online course: Analysis of Prokaryotic Pangenomes
BacterialGenomics Pangenomics
7 weeks ago by carlopecoraro2 ★ 2.5k
0
votes
0
replies
248
views
News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
8 weeks ago by carlopecoraro2 ★ 2.5k
1
vote
0
replies
188
views
News: NCBI's ClinVar now accepting somatic variation data
variation NCBI somatic-variants ClinVar
8 weeks ago by PeterC_NCBI ▴ 410
1
vote
1
reply
288
views
News: EMBL Course Hands-on course for sample preparation and data analysis in proteomics
EMBLProteomics
updated 8 weeks ago by • 0 • written 3 months ago by ▴ 10
1
vote
0
replies
216
views
News: Learn how to create robust bioinformatics pipelines for reproducible and comparable NGS analyses
nextflow pipeline workshop
8 weeks ago by David Langenberger 11k
0
votes
0
replies
168
views
News: Online course: Genome Assembly and Annotation - 3 seats left
Genome-Assembly Galaxy Genome-Annotation
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 2.5k
0
votes
0
replies
173
views
News: Call for abstract: Quest for Orthologs meeting in Montreal
conference phylogeny comparativegenomics orthology evolution
8 weeks ago by sina.majidian ▴ 20
1
vote
0
replies
174
views
News: shournal: A Tool for Bioinformaticians to Boost Research Reproducibility
reproducability terminal bash
9 weeks ago by David Langenberger 11k
1
vote
1
reply
219
views
News: Integrated Genome Browser (IGB) Office Hours
Integrated-Genome-Browser IGB
updated 9 weeks ago by 43k • written 9 weeks ago by • 0
893 results • Page 1 of 18
Recent Votes
Comment: Question about methylation location
Comment: Question about methylation location
Comment: Question about methylation location
How to use minimap2?
Comment: RNA seq analysis
Comment: Filtering Multi-sample VCF file for all except one Genotype
Truncated metadata file report from ENA Portal API
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Recent Replies
Comment: cellranger error message by Max • 0
I think the problem is your fastq_id. This should also read "RabhiN_PHLGEX". Hope this helps!
Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK by Giulio Genovese ▴ 390
@yokofakun is correct. Also, do notice that the GATK option `--RECOVER_SWAPPED_REF_ALT True` does not work with indels. In general, if your…
Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK by Pierre Lindenbaum 161k
> Don't forget to follow up on your threads. If an answer was helpful, you should upvote it; if the answer resolved your question, you shou…
Comment: How to format "I" and "D" in vcf version 4.2 for liftover analysis in GATK by Pierre Lindenbaum 161k
I think this is useless, in the gatk doc: > For each variant, the tool will look for the target coordinate, reverse-complement and left-al…
Comment: Too many unpaired forward reads found by Trimmomatic by GenoMax 142k
Ideally you will know which adapters to use but if you don't then programs like `fastp` can auto-detect them. You could also use `bbduk.sh`…
Comment: UMI-Tools knee-method has great influence on the results of white list by i.sudbery 19k
With the `--read2-only` option (which isn't available yet on the bioconda version), this will complain about a lack of `--bc-pattern`. How…
Comment: samtools tview symbols by Ruqaiya • 0
What does the star mean then ?
Comment: RNA seq analysis by prifa ▴ 10
it's raw data **fastq.gz**, so for example I have 4 different samples from different tissue, sample A with 3 replicates, samples B,C and D …
Answer: Filtering Multi-sample VCF file for all except one Genotype by Pierre Lindenbaum 161k
> The goal is to remove all the variants which are unique to the KWSBambina sample. using jvarkit vcffilterjdk https://jvarkit.readthedo…
Comment: Too many unpaired forward reads found by Trimmomatic by SilhouetteQ • 0
The first example used the adapter file NexteraPE-PE.fa, but it generated more than 50% unpaired data...... The content of NexteraPE-PE.fa…
Comment: Filtering Multi-sample VCF file for all except one Genotype by schmince • 0
Ok so I definitely didn't understand at first what my goal was. The goal is to remove all the variants which are unique to the KWSBambina…
Comment: Question about methylation location by dthorbur ★ 1.9k
What data do you have? Generally, you start with sequencing data, which you need to clean and then map to a reference genome. Then dependin…
Comment: Too many unpaired forward reads found by Trimmomatic by GenoMax 142k
> when I didn't provide the adapter file Still see the file here `ILLUMINACLIP:./NexteraPE-PE.fa:2:30:10 `, unless that is an empty file.
Comment: Too many unpaired forward reads found by Trimmomatic by SilhouetteQ • 0
Interestingly, when I didn't provide the adapter file, the number of unpaired forward reads was significantly reduced: TrimmomaticPE…
Comment: Alignment of samples with spike-in by GenoMax 142k
> but then if you only allow to map uniquely mapped reads, you are losing spike-in information, How so? Spike-in's are generally unique s…
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