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Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
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sovrappensiero
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Thanks again. Hmm...this makes me suspicious of whether this normalization is actually possible. In case you'd like to take a look, [here]…
Comment: Filtering Multi-sample VCF file for all except one Genotype
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The seven genotypes being 58025AA, 58025AG, 58051TT, 58051TC, 58051CC, 58057TT, 58057TC
Answer: TFs and Gene databases
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See [TFlink](https://tflink.net/), [KnockTF2](https://bio.liclab.net/KnockTFv2/index.php), [TFBSDB](https://tfbsdb.systemsbiology.net/), an…
Comment: Filtering Multi-sample VCF file for all except one Genotype
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> Seven genotpyes have been sampled and all variants, which belong to one of those genotpyes are to be "erased" (or every other variant exc…
Comment: Filtering Multi-sample VCF file for all except one Genotype
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> , filter a multisample VCF file for all genotypes except one of them
filter for what ?
Answer: Applying the metacell2 algorithm using python
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I had hoped things like [this Jupyter notebook for the rabbit data analysis](https://nbviewer.org/github/tanaylab/rabembflow/blob/master/2-…
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please provide the design matrix mean the metadata of the model fit2 which is there in the code . i guess other users can help
Comment: Applying the metacell2 algorithm using python
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The repo does not provide any valuable information unfortunately. The Metacell algorithm they provide in the vignette is missing the metagr…
Comment: Applying the metacell2 algorithm using python
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Yes, they are very clear about this. The page about the Vignettes says:
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This sounds like it would be a simple task in either python or R. Read data in, potentially with a library like `data.table` in `R`, depend…
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Hi, I just solved the same error. In my case, it was because I misunderstood the instructions.
hlahd.sh -t 4
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Ok, then.
You likely have a scale free topology that look like this: [link][1]
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Why did you add this as an answer to a random post? I'm moving this to a comment.
To answer your question, read this post: https://www.bio…
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> I don't understand why SAM header has "Duplicate entry" and what should I do in this case.
Your reference sequence must have fasta head…
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