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1,000 results • Page
4 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
137
views
Deconvolution using cibersortx, help with real example
deconvolution
cibersortx
15 days ago by
Dyno
• 0
0
votes
0
replies
134
views
How to correct the position of my primers
Python
primer3
updated 15 days ago by
Pierre Lindenbaum
158k • written 15 days ago by
Keith
• 0
0
votes
7
replies
423
views
Using Primer3 with python to genotype a SNP at a particular position
primer3
python
position
primer
updated 15 days ago by
Pierre Lindenbaum
158k • written 15 days ago by
Keith
• 0
0
votes
7
replies
330
views
SNP calling with many samples using bcftools
bcftools
SNP
multithreading
15 days ago by
George
• 0
0
votes
0
replies
113
views
Combining SNP array data from different chip versions
Array
Illumina
SNP
GWAS
15 days ago by
Marlene
• 0
0
votes
0
replies
113
views
Getting message while running generateMap.pl from hmmcopy_utils
cnv
linux
mappability
hmmcopy_utils
15 days ago by
kabir.deb
▴ 80
0
votes
1
reply
454
views
Error in H5Fopen
atac-seq
scatac-seq
updated 15 days ago by
caiden.golder
• 0 • written 17 months ago by
bioinformatics.girl
▴ 20
2
votes
2
replies
237
views
Compare similarity of protein variants
protein
structure
updated 15 days ago by
dthorbur
▴ 890 • written 15 days ago by
GP
• 0
0
votes
0
replies
116
views
Merging multiple DCC objects from multiple DSP runs
Spatial
transcriptomics
batches
DCC
GeoMx
16 days ago by
Pac314
▴ 10
0
votes
0
replies
128
views
Mapping Mouse RNAseq Marker Genes to Reactome Pathways
single-cell
pathways
reactome
RNAseq
gene
2 days ago by
el24
▴ 40
0
votes
2
replies
236
views
Bcftools
bcftools
vcf
updated 15 days ago by
Ram
41k • written 16 days ago by
kamila.temirkhanova
• 0
1
vote
3
replies
273
views
DNA/RNA Sequence Alignment
dna
rna
alignment
sequence
updated 16 days ago by
Mensur Dlakic
★ 25k • written 16 days ago by
Mirza
• 0
4
votes
5
replies
326
views
salmon for gene expression quantification
salmon
gene-expression
updated 15 days ago by
Ram
41k • written 16 days ago by
Ashish
• 0
0
votes
2
replies
195
views
hisat2-build
hisat2-build
hisat2
16 days ago by
Bjorn
• 0
0
votes
0
replies
100
views
ChIPQC object creation is throwing error
ChipQC
16 days ago by
Mehwish
▴ 10
0
votes
2
replies
416
views
Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
samtools
bwa
updated 11 days ago by
jkbonfield
★ 1.2k • written 16 days ago by
tnminh89
▴ 10
0
votes
4
replies
308
views
Query regarding callsets used as known sites in Variant Calling
GATK
VCF
12 days ago by
Shruti Baikerikar
• 0
1
vote
9
replies
321
views
Htseq-count reads with missing mate encountered
htseq
htseq-count
16 days ago by
Bjorn
• 0
0
votes
2
replies
211
views
Doubt about RNASeq Paired-end process
RNASEQ
NGS
Paired-end
16 days ago by
Vicent
• 0
0
votes
2
replies
191
views
standalone blastx of queries without NR annotations
miRNA
lncRNA
16 days ago by
analyst
▴ 10
1
vote
2
replies
229
views
ComBat-seq problem
ComBat-seq
RNA-Seq
batch-effect
updated 16 days ago by
Ram
41k • written 16 days ago by
Akash D
▴ 40
1
vote
8
replies
539
views
Mitochondrial genes - TPM calculation bulk RNA-Seq
TPM
RNA-Seq
mtDNA
15 days ago by
nick_b55
▴ 10
0
votes
0
replies
130
views
Help understanding DESEq2 and nbinomWaldTest
Seq
expression
differential
RNA
17 days ago by
mropri
▴ 150
0
votes
0
replies
113
views
pathscan of MuSiC2 doesn't work
MuSiC
pathscan
dinglab
17 days ago by
enho
▴ 40
1
vote
6
replies
517
views
frequency plot for peaks
chip-seq
chipseeker
updated 2 days ago by
Ankit
▴ 400 • written 18 days ago by
Mehwish
▴ 10
0
votes
0
replies
124
views
BWA mem -M option for gatk mutect
GATK
mutect
BWA
NGS
updated 17 days ago by
GenoMax
136k • written 17 days ago by
bella kira
• 0
0
votes
0
replies
132
views
giraffe alignment for exome sequencing
vg
alignment
giraffe
updated 17 days ago by
Ram
41k • written 17 days ago by
מיכל
• 0
0
votes
1
reply
166
views
annotatePeak error for some problem
ChIPseeker
updated 17 days ago by
Ram
41k • written 17 days ago by
Jones
• 0
1
vote
3
replies
270
views
Should unique gene names/transcript IDs be used for ribosomal gene copies in a GTF/GFF file?
GTF
GFF
updated 15 days ago by
dthorbur
▴ 890 • written 17 days ago by
cyril-cros
▴ 940
0
votes
3
replies
304
views
Appropriate genome reference for converting TCGA VCF files to MAF
maf
vcf
vcf2maf
TCGA
updated 13 days ago by
Zhenyu Zhang
★ 1.1k • written 17 days ago by
melissachua90
▴ 50
1
vote
1
reply
176
views
RepeatModeler-2.0 BuildDatabase error
BuildDatabase
RepeatModeler
updated 16 days ago by
shelkmike
★ 1.1k • written 17 days ago by
1041853545
• 0
1
vote
3
replies
271
views
PMID multiple pdfs download using R
R
PubMed
updated 17 days ago by
Ram
41k • written 17 days ago by
Confused_human
▴ 10
0
votes
1
reply
177
views
Bgen file not being opened by PRSice
prsice2
prsice
updated 17 days ago by
Jeremy Leipzig
22k • written 17 days ago by
Varsha
• 0
0
votes
0
replies
153
views
Filter out doublet and Clustering
single-cell
updated 17 days ago by
Ram
41k • written 17 days ago by
synat.keam
▴ 80
1
vote
0
replies
216
views
Convert Seurat object to anndata
anndata
h5ad
Seurat
17 days ago by
nadammagdy
▴ 10
0
votes
2
replies
240
views
Dorado basecall: cryptic error with pod5 subset tool
dorado
Nanopore
ONT
sequencing
pod5
17 days ago by
antoinefelden
▴ 60
0
votes
3
replies
292
views
filtering lowly expressed exons
dexseq
deseq2
updated 14 days ago by
ATpoint
78k • written 17 days ago by
wiscoyogi
▴ 40
0
votes
1
reply
265
views
Using GEO RNA seq datasets for retrieving gene expression and analysis in partek genomic suite
Genomic
GEO
suite
updated 18 days ago by
Ram
41k • written 18 days ago by
Tapas
• 0
2
votes
3
replies
314
views
Selecting a subset of MSigDB database for GSEA
fgsea
clusterprofiler
GSEA
14 days ago by
Orange
▴ 10
1
vote
2
replies
245
views
Quality control on imputed genotypes for GWAS / application of PGS
qc
imputation
plink
regenie
gwas
17 days ago by
loy_loy
▴ 10
1
vote
1
reply
184
views
Match variants for allele frequency, LD score, and other features
snp
2 days ago by
Jautis
▴ 520
1
vote
8
replies
516
views
DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
rna-seq
deseq2
12 days ago by
pingu77
▴ 20
0
votes
1
reply
167
views
miRNA. Reads to long or to short
miRNA
updated 18 days ago by
biofalconch
★ 1.1k • written 18 days ago by
ju_ra
• 0
1
vote
5
replies
326
views
bcftools mipileup error: format error, unexpected A at line 1
bcftools
updated 18 days ago by
Jautis
▴ 520 • written 18 days ago by
jiyoung
▴ 20
2
votes
11
replies
664
views
Data preparation for a ML model
machine-learning
RNA-Seq
R
python
biomarkers
1 day ago by
sil_bioinfo
▴ 30
0
votes
0
replies
117
views
GATK SelectVariants --remove-unused-alternates dropping real INDELs?
GATK
18 days ago by
benformatics
3.8k
0
votes
3
replies
333
views
STAR GeneCounts for most genes are 0
STAR
RNA-seq
updated 18 days ago by
Ram
41k • written 18 days ago by
Hansel Ivander
• 0
0
votes
1
reply
187
views
anRichment is missing
WGCNA
anRichment
updated 18 days ago by
ATpoint
78k • written 18 days ago by
michael.flower.14
▴ 180
1
vote
1
reply
199
views
How to properly quantify gene expression of tandem duplicates from RNA-seq
pipeline
illumina
plants
RNA-seq
updated 18 days ago by
dthorbur
▴ 890 • written 19 days ago by
missTique
• 0
2
votes
6
replies
461
views
Burrows-Wheeler transform
Python
BWT
DNA
updated 18 days ago by
Ram
41k • written 19 days ago by
Balqees
• 0
1,000 results • Page
4 of 20
Recent Votes
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