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How to load count matrix of scRNAseq data from cel-seq2 (96 well plates) protocol into a Seurat object
scRNAseq
updated 9 months ago by ★ 2.0k • written 9 months ago by ▴ 160
0
votes
1
reply
383
views
how to choose the best RNAseq protocol for patients sample
RNAseq
updated 16 months ago by 4.5k • written 16 months ago by ▴ 160
0
votes
0
replies
338
views
validation of pipeline for SV, SNV and repeat analysis
SV repeat SNV
20 months ago by ashkan ▴ 160
7
votes
6
replies
4.7k
views
6 follow
extracting 5'UTR of each gene
RNA-Seq
updated 3.6 years ago by 20 • written 7.4 years ago by ▴ 160
7
votes
7
replies
6.4k
views
Ribo-seq vs RNA-seq read count
RNA-Seq
updated 5.6 years ago by ▴ 20 • written 7.5 years ago by ▴ 160
3
votes
3
replies
5.4k
views
loading data file into GSEA
RNA-Seq
updated 6.1 years ago by • 0 • written 7.5 years ago by ▴ 160
19
votes
11
replies
22k
views
9 follow
finding adapters from fastq file
RNA-Seq
updated 3.0 years ago by • 0 • written 7.2 years ago by ▴ 160
2
votes
2
replies
1.1k
views
grouping the genes based on the length of coding sequence
sequencing
updated 7.2 years ago by 161k • written 7.2 years ago by ▴ 160
2
votes
2
replies
1.3k
views
optimum statistical test to get significance level
rna-seq
updated 7.3 years ago by 20 • written 7.4 years ago by ▴ 160
7
votes
4
replies
3.9k
views
how to score the values in a dictionary in python
sequence
updated 7.4 years ago by 11k • written 7.4 years ago by ▴ 160
1
vote
3
replies
2.2k
views
the most frequent isoform of each gene specific to the cell line
rna-seq
7.4 years ago by ashkan ▴ 160
0
votes
3
replies
1.8k
views
problem with filtering "Sequence unavailable"
sequence
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 160
0
votes
1
reply
3.3k
views
filtering some sequences from txt file in python
sequence
7.4 years ago by ashkan ▴ 160
0
votes
5
replies
1.5k
views
identifying mutation & copy numbers using sequencing data
SNP
updated 7.4 years ago by ★ 2.7k • written 7.4 years ago by ▴ 160
13
votes
17
replies
4.7k
views
7 follow
error in removing some lines in bam file
alignment
written 7.5 years ago by ▴ 160
1
vote
2
replies
1.8k
views
editting bam file in shell
alignment
7.5 years ago by ashkan ▴ 160
0
votes
1
reply
1.9k
views
the difference between human and mouse wiggle files for uploading on UCSC
RNA-Seq
7.5 years ago by ashkan ▴ 160
1
vote
4
replies
2.7k
views
CDS read counts per gene
RNA-Seq
updated 7.5 years ago by 20 • written 7.5 years ago by ▴ 160
0
votes
2
replies
2.0k
views
problem with uploading wiggle files to UCSC
genome
7.5 years ago by ashkan ▴ 160
0
votes
1
reply
1.3k
views
running GSEA for EMT targets_SOLVED
RNA-Seq
7.5 years ago by ashkan ▴ 160
4
votes
4
replies
3.8k
views
differentially expression analysis using raw read counts
RNA-Seq
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 160
8
votes
4
replies
3.9k
views
exporting the results of edgeR into a text file using R
rna-seq
updated 7.5 years ago by 8.3k • written 7.5 years ago by ▴ 160
1
vote
4
replies
2.0k
views
problem with counting reads per gene using HTseq
RNA-Seq
7.5 years ago by ashkan ▴ 160
3
votes
11
replies
7.0k
views
how to modify one column in text file in python - solved
RNA-Seq
updated 7.5 years ago by 47k • written 7.5 years ago by ▴ 160
0
votes
2
replies
1.4k
views
coding sequnce read coun
RNA-Seq
updated 7.5 years ago by 47k • written 7.5 years ago by ▴ 160
1
vote
1
reply
4.5k
views
DNA to protein in python
next-gen
7.5 years ago by ashkan ▴ 160
2
votes
2
replies
1.2k
views
codon occurrence in the coding sequence in python
RNA-Seq
updated 7.6 years ago by 104k • written 7.6 years ago by ▴ 160
1
vote
3
replies
1.2k
views
upstream open reading frame gene filteration
RNA-Seq
7.6 years ago by ashkan ▴ 160
3
votes
3
replies
2.5k
views
correction for multiple testing
RNA-Seq
updated 7.7 years ago by 6.5k • written 7.7 years ago by ▴ 160
4
votes
6
replies
1.8k
views
statistical analysis of RNA-seq data
RNA-Seq
updated 7.7 years ago by ▴ 310 • written 7.7 years ago by ▴ 160
1
vote
1
reply
1.3k
views
how to make permanent links on the UCSC
RNA-Seq next-gen
updated 7.7 years ago by 161k • written 7.7 years ago by ▴ 160
0
votes
1
reply
1.1k
views
projecting short reads on the transcript
sequencing alignment
7.8 years ago by ashkan ▴ 160
7
votes
5
replies
1.2k
views
problem in results
RNA-Seq genome next-gen
7.9 years ago by ashkan ▴ 160
1
vote
6
replies
2.7k
views
error in uploading bigbed file on UCSC
RNA-Seq sequencing ucsc
updated 7.9 years ago by 23k • written 7.9 years ago by ▴ 160
4
votes
2
replies
2.5k
views
upload Multiple custom tracks on ucsc
genome next-gen
updated 7.9 years ago by ★ 1.3k • written 7.9 years ago by ▴ 160
2
votes
5
replies
3.1k
views
BED to BigBed conversion problem.
RNA-Seq next-gen sequencing
7.9 years ago by ashkan ▴ 160
1
vote
4
replies
3.1k
views
uploading files to the UCSC
alignment genome Assembly
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by ▴ 160
4
votes
5
replies
2.3k
views
filtering the rows in R
R RNA-Seq
updated 7.9 years ago by 47k • written 7.9 years ago by ▴ 160
0
votes
2
replies
986
views
suitable file for the alignment
next-gen alignment
7.9 years ago by ashkan ▴ 160
1
vote
1
reply
1.4k
views
genomic and coding DNA sequences of ORFs in human in fasta format
genome fasta
updated 7.9 years ago by 104k • written 7.9 years ago by ▴ 160
0
votes
1
reply
1.8k
views
cloud based vs local pipeline for RNA-seq data analysis
RNA-Seq next-gen
updated 19 months ago by 43k • written 8.7 years ago by ▴ 160
4
votes
4
replies
5.0k
views
filtering out the genes in RNA-seq experiment
RNA-Seq
updated 16 months ago by 43k • written 8.9 years ago by ▴ 160
42 results • Page 1 of 1
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