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2
votes
5
replies
3.1k
views
switch off warning in blast command line
efetch ensembl warnings
updated 4.5 years ago by ★ 30k • written 4.5 years ago by ▴ 770
0
votes
1
reply
1.6k
views
Comment: Comment: What is the resolution of microbial sequence assembly
4.5 years ago by marongiu.luigi ▴ 770
2
votes
4
replies
1.6k
views
What is the resolution of microbial sequence assembly
microbiome SPAdes assembly species
updated 4.5 years ago by ▴ 130 • written 4.5 years ago by ▴ 770
0
votes
1
reply
3.1k
views
Comment: Comment: switch off warning in blast command line
4.5 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
1.1k
views
Export ensembl efetch in comma-delimited format
format efetch ensembl
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 770
0
votes
1
reply
1.3k
views
How to solve Warning: [blastx] Taxonomy name
alignment blastx warning blast
updated 4.5 years ago by 154k • written 4.5 years ago by ▴ 770
0
votes
0
replies
2.7k
views
Comment: Comment: How to calculate bam coverage apart from Qualimap?
4.5 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
2.7k
views
Comment: Comment: How to calculate bam coverage apart from Qualimap?
4.5 years ago by marongiu.luigi ▴ 770
0
votes
5
replies
2.7k
views
How to calculate bam coverage apart from Qualimap?
bam qualimap coverage
4.5 years ago by marongiu.luigi ▴ 770
2
votes
1
reply
2.0k
views
Why bamToFastq returns empty fastq files?
bamToFastq error bam fastq
updated 4.5 years ago by 89k • written 4.5 years ago by ▴ 770
0
votes
0
replies
3.6k
views
Comment: Comment: How to run SPAdes assembler with bam files?
4.5 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
3.6k
views
Comment: Comment: How to run SPAdes assembler with bam files?
4.5 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
3.6k
views
Comment: Comment: How to run SPAdes assembler with bam files?
4.5 years ago by marongiu.luigi ▴ 770
1
vote
5
replies
3.6k
views
How to run SPAdes assembler with bam files?
spades assembler bam
4.5 years ago by marongiu.luigi ▴ 770
0
votes
0
replies
1.6k
views
Comment: Comment: References saying that BWA is not quite specific
4.6 years ago by marongiu.luigi ▴ 770
2
votes
3
replies
1.6k
views
References saying that BWA is not quite specific
bwamem aligner
4.6 years ago by marongiu.luigi ▴ 770
1
vote
1
reply
938
views
Reasons for drops in alignment
alignment quality
updated 4.6 years ago by ★ 3.0k • written 4.6 years ago by ▴ 770
0
votes
0
replies
2.0k
views
Answer: C: Error in extracting SRA file: symbol lookup error
4.8 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
2.0k
views
Error in extracting SRA file: symbol lookup error
software error next-gen sequence
4.8 years ago by marongiu.luigi ▴ 770
0
votes
0
replies
899
views
How to calculate the occurrence of a stretch of nucleotides in a genome?
genome
4.8 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
2.6k
views
Comment: C: makeblastdb check for correct formatting
4.9 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
2.6k
views
Comment: C: makeblastdb check for correct formatting
4.9 years ago by marongiu.luigi ▴ 770
2
votes
7
replies
2.6k
views
makeblastdb check for correct formatting
software error blastdb sanity check
updated 4.9 years ago by 154k • written 4.9 years ago by ▴ 770
1
vote
0
replies
1.3k
views
Comment: C: How to run Transeq?
5.0 years ago by marongiu.luigi ▴ 770
1
vote
2
replies
1.3k
views
How to run Transeq?
software error use sequencing
5.0 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
1000
views
How to be sure that the microbiome I obtained is sound?
alignment sequencing next-gen assembly error
updated 4.4 years ago by ▴ 160 • written 5.1 years ago by ▴ 770
0
votes
1
reply
1.4k
views
how to download all reference files with ensembl and taxon ID?
sequence ensembl efetch esearch
5.2 years ago by marongiu.luigi ▴ 770
0
votes
0
replies
1.4k
views
Answer: A: how to download all reference files with ensembl and taxon ID?
5.2 years ago by marongiu.luigi ▴ 770
1
vote
6
replies
1.8k
views
Can I get a hit by WGS but not by PCR?
sequencing next-gen confirmation PCR
updated 5.3 years ago by 20 • written 5.4 years ago by ▴ 770
7
votes
6
replies
10k
views
premade BWA hg38 index
genome Assembly next-gen
updated 5.3 years ago by 20 • written 7.9 years ago by ▴ 770
1
vote
0
replies
4.5k
views
Comment: C: What is the story behind chrEBV?
5.3 years ago by marongiu.luigi ▴ 770
5
votes
3
replies
4.5k
views
What is the story behind chrEBV?
Assembly next-gen genome
5.3 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
1.8k
views
Comment: C: Can I get a hit by WGS but not by PCR?
5.4 years ago by marongiu.luigi ▴ 770
0
votes
2
replies
1.8k
views
Comment: C: Can I get a hit by WGS but not by PCR?
5.4 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
1.4k
views
Comment: C: How to test transposition in BAM files?
5.4 years ago by marongiu.luigi ▴ 770
3
votes
4
replies
1.4k
views
How to test transposition in BAM files?
Assembly sequencing trasnposition
5.4 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
5.7k
views
Comment: C: sambamba-sort: Error reading BGZF with BAM file
5.4 years ago by marongiu.luigi ▴ 770
3
votes
4
replies
5.7k
views
sambamba-sort: Error reading BGZF with BAM file
software error sort sambamba
updated 5.4 years ago by 89k • written 5.4 years ago by ▴ 770
8
votes
2
replies
1.3k
views
What species are indicators of environmental contamination in metagenomic studies?
WGS alignment assembly RNA-Seq contamination
updated 5.5 years ago by 8.0k • written 5.5 years ago by ▴ 770
0
votes
0
replies
1.2k
views
Comment: C: Is there a model for detection of few reads for low abundance targets?
5.5 years ago by marongiu.luigi ▴ 770
0
votes
1
reply
1.2k
views
Comment: C: Is there a model for detection of few reads for low abundance targets?
5.5 years ago by marongiu.luigi ▴ 770
2
votes
4
replies
1.2k
views
Is there a model for detection of few reads for low abundance targets?
WGS alignment next-gen sequencing
5.5 years ago by marongiu.luigi ▴ 770
0
votes
2
replies
2.6k
views
use samtools stats to plot quality of alignment
alignment quality control visualization
updated 5.6 years ago by 89k • written 5.6 years ago by ▴ 770
0
votes
0
replies
1.1k
views
Comment: C: Interpretation of sparse reads
5.6 years ago by marongiu.luigi ▴ 770
2
votes
2
replies
1.1k
views
Interpretation of sparse reads
assembly next-gen interpretation alignment
updated 5.6 years ago by 8.0k • written 5.6 years ago by ▴ 770
3
votes
4
replies
1.9k
views
convert NCBI to GO terms with biomart for r
conversion ncbi ensembl R biomart
updated 5.6 years ago by 12k • written 5.6 years ago by ▴ 770
0
votes
2
replies
1.9k
views
Comment: C: convert NCBI to GO terms with biomart for r
5.6 years ago by marongiu.luigi ▴ 770
8
votes
6
replies
6.9k
views
how to unpack sra file?
SRA file use unpack
updated 5.7 years ago by 4.2k • written 5.7 years ago by ▴ 770
4
votes
2
replies
1.4k
views
How to covert RKPM into absolute quantification?
sequencing genome alignment
updated 5.7 years ago by 89k • written 5.7 years ago by ▴ 770
1
vote
1
reply
839
views
Application of empty blast result
blast filtering empty
5.7 years ago by marongiu.luigi ▴ 770
572 results • Page 3 of 12
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