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3
votes
2
replies
3.2k
views
How to normalize 450K data for cell type composition
450K normalization cell type
updated 6.9 years ago by 13k • written 7.9 years ago by 11k
0
votes
1
reply
3.7k
views
PICARD MarkDuplicates with random barcodes
picard barcode
7.0 years ago by Nicolas Rosewick 11k
4
votes
7
replies
1.8k
views
How to compute global chromosome expression from RNA-Seq
RNA-Seq chromosome expression
updated 7.1 years ago by 47k • written 7.1 years ago by 11k
5
votes
5
replies
2.3k
views
RNA-Seq expression analysis of heterogeneous data (cancer+healthy cells)
RNA-Seq heterogeneous deconvolution
updated 7.3 years ago by ★ 1.8k • written 7.3 years ago by 11k
3
votes
8
replies
5.2k
views
Generate random genomic positions with R
R genomic position
7.4 years ago by Nicolas Rosewick 11k
0
votes
2
replies
3.0k
views
Download Tarbase 6.0
updated 7.4 years ago by 20 • written 10.7 years ago by 11k
0
votes
4
replies
3.3k
views
BBMAP outputs multimapped reads in ambiguous=toss
bbmap
7.5 years ago by Nicolas Rosewick 11k
1
vote
3
replies
2.4k
views
BBMap : NH:i:1 and XT:A:R
bbmap
updated 5 months ago by ▴ 10 • written 7.5 years ago by 11k
8
votes
11
replies
4.1k
views
STAR can not detect this chimeric read
RNA-Seq fusion STAR
updated 7.5 years ago by 20 • written 7.7 years ago by 11k
1
vote
1
reply
1.7k
views
cbioPortal MutationMapper protein domain annotation not up-to-date
lollipop needle
updated 7.5 years ago by 20 • written 7.6 years ago by 11k
1
vote
1
reply
2.1k
views
Viral sequence in GDC data
virus GDC
updated 7.6 years ago by ▴ 10 • written 7.7 years ago by 11k
5
votes
6
replies
2.2k
views
Looking for a cancer dataset for RNA-Seq workshop
RNA-Seq data workshop
updated 7.6 years ago by 19k • written 7.6 years ago by 11k
1
vote
0
replies
2.3k
views
BBmap : how to output only unique alignment
bbmap
7.6 years ago by Nicolas Rosewick 11k
1
vote
4
replies
1.7k
views
Time series event recurrence comparison
recurrence time-series
updated 11 months ago by 43k • written 7.6 years ago by 11k
2
votes
5
replies
1.3k
views
Effect of premature transcription termination on gene transcript/protein
polyA mutation
7.7 years ago by Nicolas Rosewick 11k
1
vote
0
replies
1.5k
views
Generate paired-end fusion read with specific origin and a random destination
simulated read dna-seq fusion
7.7 years ago by Nicolas Rosewick 11k
1
vote
6
replies
2.3k
views
Mutation effect on expression (RNA-Seq) using limma
limma RNA-Seq
7.7 years ago by Nicolas Rosewick 11k
3
votes
1
reply
4.3k
views
Download TCGA cancer and normal tissue gene expression data from GDC
TCGA GDC normal cancer
7.7 years ago by Nicolas Rosewick 11k
2
votes
2
replies
4.2k
views
Tophat Parameters Misunderstanding
tophat
updated 7.7 years ago by 20 • written 12.1 years ago by 11k
11
votes
3
replies
12k
views
featureCounts exon counting problem
exon featurecounts
updated 3.1 years ago by 43k • written 8.8 years ago by 11k
0
votes
1
reply
2.3k
views
How to check the expression of a specific gene across all TCGA samples
TCGA gene expression
updated 7.8 years ago by ★ 1.9k • written 7.8 years ago by 11k
2
votes
5
replies
1.9k
views
What is the genic size (exon+intron) of a genome
gene genome
updated 7.8 years ago by ★ 3.2k • written 7.8 years ago by 11k
0
votes
0
replies
3.3k
views
Gviz : fill and line arrow color issues
gviz
8.0 years ago by Nicolas Rosewick 11k
1
vote
1
reply
2.5k
views
Remove low-complexity region from bed file
low complexity bed
8.1 years ago by Nicolas Rosewick 11k
2
votes
1
reply
1.7k
views
How to list genomic regions that are close in a 3D conformation manner using Hi-C data ?
Hi-C
updated 8.1 years ago by ▴ 280 • written 8.1 years ago by 11k
0
votes
2
replies
1.7k
views
IGV: Load custom data (chr, start, end, strand, sample)
IGV
updated 8.1 years ago by 14k • written 8.1 years ago by 11k
3
votes
2
replies
1.6k
views
450K complex design
450K
updated 20 months ago by 43k • written 8.5 years ago by 11k
1
vote
9
replies
2.1k
views
7 follow
Are these reads all PCR replicates ?
dna-seq
updated 8.2 years ago by ▴ 700 • written 8.2 years ago by 11k
1
vote
0
replies
1.3k
views
Align HTS on microsatellite
microsatellite DNA-Seq
updated 21 months ago by 43k • written 8.2 years ago by 11k
14
votes
13
replies
14k
views
11 follow
Visualize Strand-Specific Rna-Seq : How To Differentiate Strands
rna-seq visualization strand
updated 8.3 years ago by ▴ 130 • written 11.2 years ago by 11k
3
votes
2
replies
6.2k
views
Tophat: How Many Allowed Mismatch ?
tophat
updated 8.3 years ago by 20 • written 12.1 years ago by 11k
0
votes
4
replies
3.0k
views
qRT-PCR analysis : average triplicates for statistical testing
qrt-pcr replicates statistics
updated 21 months ago by 43k • written 8.4 years ago by 11k
0
votes
0
replies
1.9k
views
450K annotation (ENSEMBL)
450K annotation
updated 21 months ago by 43k • written 8.4 years ago by 11k
101
votes
6
replies
63k
views
6 follow
Insert Size And Fragment Size ?
2.5 years ago by Nicolas Rosewick 11k
6
votes
11
replies
5.6k
views
Sequence Identity : Nucleotide Resolution
sequence
updated 8.5 years ago by 20 • written 11.9 years ago by 11k
1
vote
4
replies
1.8k
views
How to assess non-randomness of viral integration in the genome
integration randomness
updated 20 months ago by 43k • written 8.6 years ago by 11k
1
vote
2
replies
1.9k
views
How can I ask bedops element-of to add additional informations in its output ?
bedops
updated 8.6 years ago by 35k • written 8.6 years ago by 11k
3
votes
8
replies
14k
views
Tophat2 : Error: Segment-Based Junction Search Failed With Err =-11
tophat error
updated 8.6 years ago by ▴ 640 • written 11.7 years ago by 11k
0
votes
1
reply
2.4k
views
Align long nanopore minion cDNA reads
nanopore alignment long-reads
updated 19 months ago by 43k • written 8.7 years ago by 11k
8
votes
7
replies
10k
views
Tophat: Compressed Fastq File (Gz)
tophat
updated 8.8 years ago by 20 • written 12.1 years ago by 11k
0
votes
1
reply
2.4k
views
Polyadenylation cleavage sites detection from rRNA-depleted RNA-Seq
polyA RNA-Seq
updated 8.8 years ago by 20 • written 8.8 years ago by 11k
1
vote
3
replies
1.9k
views
Extracting transcriptonally perturbated gene subnetworks using a list of target genes, RNA-Seq data and pathway informations
RNA-Seq subnetwork pathway
updated 17 months ago by 43k • written 8.8 years ago by 11k
5
votes
3
replies
5.9k
views
How to extract reads supporting protein-coding gene splice junctions from STAR's SJ.out.tab output
splice STAR
updated 16 months ago by 43k • written 8.9 years ago by 11k
0
votes
1
reply
2.0k
views
450K - ChAMP : How to analyse 5-hmc data ?
champ methylation 450k
updated 16 months ago by 43k • written 8.9 years ago by 11k
19
votes
14
replies
6.7k
views
DESeq2 multiple factor design clarification
deseq2 design
updated 16 months ago by 43k • written 8.9 years ago by 11k
0
votes
1
reply
2.8k
views
Extracting gene subnetwork from pathways using gene expression data
gene-subnetwork pathway active-module
updated 15 months ago by 43k • written 9.0 years ago by 11k
6
votes
4
replies
9.1k
views
DESeq2: Error: $ operator is invalid for atomic vectors using DESeqDataSetFromMatrix
deseq2 DESeqDataSetFromMatrix
updated 15 months ago by 43k • written 9.0 years ago by 11k
8
votes
3
replies
5.6k
views
tRNA expression analysis from RNA-Seq
tRNA RNA-Seq
updated 22 months ago by 43k • written 9.0 years ago by 11k
3
votes
6
replies
4.8k
views
Counting reads supporting a specific splice junction from bam file
splice junction bam
updated 22 months ago by 43k • written 9.0 years ago by 11k
0
votes
3
replies
2.0k
views
Sample-matched RNA-Seq gene expression analysis
RNA-Seq
9.1 years ago by Nicolas Rosewick 11k
211 results • Page 2 of 5
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