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Showing :
questions
2
votes
5
replies
989
views
how to compare mapping of WES samples to human pangenome?
WES
pangenome
vg
12 months ago by
bitpir
▴ 250
3
votes
5
replies
1.1k
views
query UCSC db for CDS coordinates (Gencode)
CDS
mysql
UCSC
bed
updated 17 months ago by
GenoMax
145k • written 17 months ago by
bitpir
▴ 250
0
votes
1
reply
687
views
PF_INDEL_RATE calculation and definition
picard
AlignmentSummaryMetrics
picardmetrics
19 months ago by
bitpir
▴ 250
0
votes
0
replies
395
views
QUAL differences for different caller
score
vardict
quality
vcf
freebayes
calling
variant
21 months ago by
bitpir
▴ 250
0
votes
1
reply
744
views
variant analysis using Freebayes
calling
freebayes
false
variant
positives
updated 23 months ago by
young_bioinformatician
▴ 240 • written 23 months ago by
bitpir
▴ 250
0
votes
0
replies
397
views
understanding UMAP mappability bed file
UMAP
mappability
2.4 years ago by
bitpir
▴ 250
0
votes
2
replies
602
views
getting fastq ID with SNPs
SNP
genome browser
fastq
3.5 years ago by
bitpir
▴ 250
2
votes
1
reply
1.2k
views
hsmetrics on_target_bases and on_baits_bases calculation
hsmetrics
hybridization selection
updated 4.0 years ago by
parvathi.sudha
▴ 40 • written 4.1 years ago by
bitpir
▴ 250
0
votes
1
reply
2.6k
views
understanding pysam.AlignmentFile output
pysam
sam
bam
updated 4.6 years ago by
onestop_data
▴ 330 • written 4.6 years ago by
bitpir
▴ 250
0
votes
2
replies
945
views
relationship between relative abundance and relative activity
meta-transcriptomics
RNA-seq
updated 5.6 years ago by
Biostar
20 • written 5.7 years ago by
bitpir
▴ 250
0
votes
0
replies
1.1k
views
help with interpreting metagenomic metatranscriptomic data
meta-transcriptomic
meta-genomic
5.6 years ago by
bitpir
▴ 250
0
votes
0
replies
1.2k
views
measure relative abundance from rna-seq
RNA-Seq
meta-transcriptomics
5.8 years ago by
bitpir
▴ 250
1
vote
0
replies
1.7k
views
how to speed up cdhit clustering?
cdhit
protein clustering
nucleotide clustering
5.9 years ago by
bitpir
▴ 250
1
vote
3
replies
2.1k
views
how to concatenate contigs from repseq?
refseq
concatenate
ncbi
updated 6.0 years ago by
h.mon
35k • written 6.0 years ago by
bitpir
▴ 250
0
votes
1
reply
852
views
tools/resources on mixed-integer programming
probability
mixed-integer programming
updated 6.0 years ago by
Ram
44k • written 6.0 years ago by
bitpir
▴ 250
0
votes
1
reply
977
views
taxa identification using signature vs alignment to refseq
alignment
signatures
refseq
metagenomics
6.1 years ago by
bitpir
▴ 250
1
vote
1
reply
1.6k
views
finding secondary taxid using ete3 ncbiTaxa
ete3
python
ncbiTaxa
taxonomyid
6.1 years ago by
bitpir
▴ 250
1
vote
1
reply
3.5k
views
difference between mapq=0 and samtools flag 0x900
samtools
mapq
updated 6.2 years ago by
Devon Ryan
104k • written 6.2 years ago by
bitpir
▴ 250
0
votes
6
replies
1.4k
views
getting a combination of all predicted genes
bedtools
gff
updated 6.3 years ago by
Alex Reynolds
35k • written 6.3 years ago by
bitpir
▴ 250
2
votes
5
replies
2.4k
views
getting feature annotations for all NCBI Refseq sequences
ncbi
refseq
annotation
CDS
updated 6.3 years ago by
GenoMax
145k • written 6.3 years ago by
bitpir
▴ 250
2
votes
4
replies
4.0k
views
IGV tracks gene annotation
IGV
gene
GFF
updated 6.3 years ago by
h.mon
35k • written 6.3 years ago by
bitpir
▴ 250
0
votes
0
replies
1.4k
views
complete and partial ORF identification
ORF
gene prediciton
Glimmer
Genemark
6.4 years ago by
bitpir
▴ 250
0
votes
4
replies
2.2k
views
Glimmer output file
ORF prediction
Glimmer3
6.4 years ago by
bitpir
▴ 250
4
votes
5
replies
2.7k
views
best way to do joint genotyping
gatk
joint-genotyping
vcf
updated 6.5 years ago by
Biostar
20 • written 6.6 years ago by
bitpir
▴ 250
3
votes
2
replies
1.5k
views
how does Agilent/xGen design hybridization probes?
exome sequencing
custom probes
updated 6.6 years ago by
jean.elbers
★ 1.7k • written 6.6 years ago by
bitpir
▴ 250
3
votes
12
replies
4.5k
views
do blast search using gi numbers
blast
7.1 years ago by
bitpir
▴ 250
4
votes
3
replies
7.9k
views
ncbi error C++ exception
blast
ncbi
7.1 years ago by
bitpir
▴ 250
0
votes
0
replies
2.2k
views
finding NCBI protein ID and associated COG ID
blastx
nr database
COG
7.1 years ago by
bitpir
▴ 250
4
votes
3
replies
1.7k
views
customize reference genome
DNA-seq
updated 7.2 years ago by
WouterDeCoster
47k • written 7.2 years ago by
bitpir
▴ 250
0
votes
0
replies
1.0k
views
software recommendations for identifying self from non-self dna sequences
forensics
dna sequencing
7.2 years ago by
bitpir
▴ 250
2
votes
1
reply
1.4k
views
CNVkit plotting tumor + healthy individuals
CNVkit software
updated 7.6 years ago by
Eric T.
★ 2.8k • written 8.3 years ago by
bitpir
▴ 250
1
vote
4
replies
2.7k
views
Question about GATK hardfiltering conditions
gatk
hardfiltering
updated 7.6 years ago by
Brian Bushnell
20k • written 7.6 years ago by
bitpir
▴ 250
0
votes
3
replies
1.8k
views
Total SNP calculation using command line vs picardtools
picardtools
SNP
updated 8.0 years ago by
igor
13k • written 8.0 years ago by
bitpir
▴ 250
6
votes
17
replies
4.3k
views
fold enrichment calculation for exome sequencing
exome
fold enrichment
8.0 years ago by
bitpir
▴ 250
1
vote
2
replies
11k
views
samtools counting unique mapped reads
samtools
read counts
updated 2.5 years ago by
Jose
• 0 • written 8.1 years ago by
bitpir
▴ 250
35 results • Page
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