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2
votes
5
replies
1.1k
views
how to compare mapping of WES samples to human pangenome?
WES pangenome vg
15 months ago by bitpir ▴ 250
3
votes
5
replies
1.2k
views
query UCSC db for CDS coordinates (Gencode)
CDS mysql UCSC bed
updated 20 months ago by 148k • written 21 months ago by ▴ 250
0
votes
1
reply
732
views
PF_INDEL_RATE calculation and definition
picard AlignmentSummaryMetrics picardmetrics
22 months ago by bitpir ▴ 250
0
votes
0
replies
428
views
QUAL differences for different caller
score vardict quality vcf freebayes calling variant
2.1 years ago by bitpir ▴ 250
0
votes
1
reply
801
views
variant analysis using Freebayes
calling freebayes false variant positives
updated 2.2 years ago by ▴ 240 • written 2.2 years ago by ▴ 250
0
votes
0
replies
436
views
understanding UMAP mappability bed file
UMAP mappability
2.7 years ago by bitpir ▴ 250
0
votes
2
replies
635
views
getting fastq ID with SNPs
SNP genome browser fastq
3.8 years ago by bitpir ▴ 250
2
votes
1
reply
1.2k
views
hsmetrics on_target_bases and on_baits_bases calculation
hsmetrics hybridization selection
updated 4.3 years ago by ▴ 40 • written 4.3 years ago by ▴ 250
0
votes
1
reply
2.6k
views
understanding pysam.AlignmentFile output
pysam sam bam
updated 4.9 years ago by ▴ 330 • written 4.9 years ago by ▴ 250
0
votes
2
replies
995
views
relationship between relative abundance and relative activity
meta-transcriptomics RNA-seq
updated 5.8 years ago by 20 • written 6.0 years ago by ▴ 250
0
votes
0
replies
1.1k
views
help with interpreting metagenomic metatranscriptomic data
meta-transcriptomic meta-genomic
5.9 years ago by bitpir ▴ 250
0
votes
0
replies
1.3k
views
measure relative abundance from rna-seq
RNA-Seq meta-transcriptomics
6.1 years ago by bitpir ▴ 250
1
vote
0
replies
1.7k
views
how to speed up cdhit clustering?
cdhit protein clustering nucleotide clustering
6.1 years ago by bitpir ▴ 250
1
vote
3
replies
2.1k
views
how to concatenate contigs from repseq?
refseq concatenate ncbi
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 250
0
votes
1
reply
892
views
tools/resources on mixed-integer programming
probability mixed-integer programming
updated 6.2 years ago by 44k • written 6.2 years ago by ▴ 250
0
votes
1
reply
1.0k
views
taxa identification using signature vs alignment to refseq
alignment signatures refseq metagenomics
6.4 years ago by bitpir ▴ 250
1
vote
1
reply
1.7k
views
finding secondary taxid using ete3 ncbiTaxa
ete3 python ncbiTaxa taxonomyid
6.4 years ago by bitpir ▴ 250
1
vote
1
reply
3.7k
views
difference between mapq=0 and samtools flag 0x900
samtools mapq
updated 6.5 years ago by 104k • written 6.5 years ago by ▴ 250
0
votes
6
replies
1.5k
views
getting a combination of all predicted genes
bedtools gff
updated 6.5 years ago by 36k • written 6.5 years ago by ▴ 250
2
votes
5
replies
2.5k
views
getting feature annotations for all NCBI Refseq sequences
ncbi refseq annotation CDS
updated 6.6 years ago by 148k • written 6.6 years ago by ▴ 250
2
votes
4
replies
4.2k
views
IGV tracks gene annotation
IGV gene GFF
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 250
0
votes
0
replies
1.4k
views
complete and partial ORF identification
ORF gene prediciton Glimmer Genemark
6.6 years ago by bitpir ▴ 250
0
votes
4
replies
2.2k
views
Glimmer output file
ORF prediction Glimmer3
6.6 years ago by bitpir ▴ 250
4
votes
5
replies
2.8k
views
best way to do joint genotyping
gatk joint-genotyping vcf
updated 6.7 years ago by 20 • written 6.8 years ago by ▴ 250
3
votes
2
replies
1.6k
views
how does Agilent/xGen design hybridization probes?
exome sequencing custom probes
updated 6.8 years ago by ★ 1.7k • written 6.8 years ago by ▴ 250
3
votes
12
replies
4.6k
views
do blast search using gi numbers
blast
7.4 years ago by bitpir ▴ 250
4
votes
3
replies
8.1k
views
ncbi error C++ exception
blast ncbi
7.4 years ago by bitpir ▴ 250
0
votes
0
replies
2.3k
views
finding NCBI protein ID and associated COG ID
blastx nr database COG
7.4 years ago by bitpir ▴ 250
4
votes
3
replies
1.7k
views
customize reference genome
DNA-seq
updated 7.4 years ago by 47k • written 7.4 years ago by ▴ 250
0
votes
0
replies
1.0k
views
software recommendations for identifying self from non-self dna sequences
forensics dna sequencing
7.4 years ago by bitpir ▴ 250
2
votes
1
reply
1.4k
views
CNVkit plotting tumor + healthy individuals
CNVkit software
updated 7.8 years ago by ★ 2.8k • written 8.6 years ago by ▴ 250
1
vote
4
replies
2.8k
views
Question about GATK hardfiltering conditions
gatk hardfiltering
updated 7.8 years ago by 20k • written 7.9 years ago by ▴ 250
0
votes
3
replies
1.8k
views
Total SNP calculation using command line vs picardtools
picardtools SNP
updated 8.2 years ago by 13k • written 8.2 years ago by ▴ 250
6
votes
17
replies
4.5k
views
fold enrichment calculation for exome sequencing
exome fold enrichment
8.3 years ago by bitpir ▴ 250
1
vote
2
replies
11k
views
samtools counting unique mapped reads
samtools read counts
updated 2.8 years ago by • 0 • written 8.4 years ago by ▴ 250
35 results • Page 1 of 1
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