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0
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452
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Merge CollectInsertSizeMetrics outputs
Picard CollectInsertSizeMetrics
2.4 years ago by MS ▴ 40
6
votes
4
replies
4.0k
views
CIBERSORT input file for RNA-Seq data
Cibersort RNA-Seq
updated 2.3 years ago by ★ 4.4k • written 3.4 years ago by ▴ 40
0
votes
0
replies
487
views
determination of miRNA FPKM value
mirdeep2 fpkm cufflinks
2.9 years ago by MS ▴ 40
1
vote
2
replies
943
views
Tumor cell percentage detection tool
cfdna Tumor maftools
updated 21 months ago by 45k • written 3.3 years ago by ▴ 40
0
votes
1
reply
1.0k
views
How to get vafCol converting annovar outputs to maf object
inferHeterogeneity maftools annovarToMaf
updated 3.0 years ago by ▴ 120 • written 3.5 years ago by ▴ 40
0
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3
replies
812
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Tutorial for ROC curve analysis using DE RNA data in R
ROC
updated 3.0 years ago by 6.2k • written 3.0 years ago by ▴ 40
0
votes
6
replies
2.0k
views
Unsupervised hierarchical clustering of DEG in Rstudio
hclust clustering Unsupervised DEGclustering
updated 3.1 years ago by ★ 18k • written 3.1 years ago by ▴ 40
2
votes
4
replies
1.9k
views
How to merge miRDeep2 counts for DeSeq2 analysis?
DEmiRNA miRDeep2 smallRNA-SEQ
3.3 years ago by MS ▴ 40
0
votes
0
replies
626
views
Immune cell heterogeneity clustering using CIBERSORT output
cell immune hierarchical cibersort clustering heterogeneity Deconvolution
3.3 years ago by MS ▴ 40
1
vote
3
replies
2.0k
views
Header error while converting sam file to bam
errorconvertsamtobam samtools bowtie samtoolsheadererror
updated 3.3 years ago by ▴ 370 • written 3.3 years ago by ▴ 40
0
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0
replies
934
views
Comparison of ChIPseeker and GREAT peak annotations
Peak annotation GREAT ChIPseeker
3.4 years ago by MS ▴ 40
9
votes
7
replies
4.5k
views
6 follow
How to get output of annotated genes from ChIPseeker tool
ChIPseeker peakannotation
updated 3.5 years ago by ★ 1.9k • written 3.9 years ago by ▴ 40
0
votes
0
replies
1.1k
views
How to get vaf information column using annovartomaf
inferHeterogeneity vafCol maftools t_vaf annovartomaf
3.5 years ago by MS ▴ 40
2
votes
5
replies
1.3k
views
how to determine genes expressed in NK cells using DE RNA-Seq data
ImmGen NKcellgenes
updated 3.7 years ago by 45k • written 3.7 years ago by ▴ 40
2
votes
13
replies
3.2k
views
pearson correlation between lncRNA and mRNA
pearson correlation R cor.test
updated 3.3 years ago by 45k • written 3.7 years ago by ▴ 40
0
votes
0
replies
868
views
Best Tool for Tumor Cell Percentage Calculation (Paired NGS data)
next-gen snp SNP NGS
5.7 years ago by MS ▴ 40
0
votes
0
replies
1.6k
views
gatk AnalyzeCovariates The following object is masked from package stats
R AnalyzeCovariates stats gatk
6.1 years ago by MS ▴ 40
1
vote
5
replies
2.0k
views
defuse running error message
defuse software error
6.1 years ago by MS ▴ 40
3
votes
1
reply
7.6k
views
conda Solving environment: failed
defuse conda anaconda chimerascan
updated 6.1 years ago by 105k • written 6.1 years ago by ▴ 40
2
votes
4
replies
2.0k
views
why FastQC tool K-mer content parameter is absent?
fastqc wts k-mer afterQC fastp
6.1 years ago by MS ▴ 40
2
votes
2
replies
1.4k
views
Best tool for Chimeric Transcript Analysis?
RNA-Seq WTS Chimeric NGS fusion
updated 6.2 years ago by ★ 1.0k • written 6.2 years ago by ▴ 40
0
votes
8
replies
1.5k
views
AfterQC what is the reason killed
sequence alignment
6.2 years ago by MS ▴ 40
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