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comments
2
votes
2
replies
517
views
Is MACS3 the same as MACS2?
MACS
MACS3
MACS2
updated 3 months ago by
GenoMax
141k • written 3 months ago by
cwwong13
▴ 40
2
votes
2
replies
576
views
Forum:
Do batches contain biological variations in omics data (RNAseq or scRNAseq)?
combat
single-cell
omics
batch
rnaseq
updated 3 months ago by
Ram
43k • written 3 months ago by
cwwong13
▴ 40
0
votes
1
reply
710
views
Comment:
Comment: Tests for the linear and non-linear relationship between two genes
3 months ago by
cwwong13
▴ 40
0
votes
0
replies
710
views
Comment:
Comment: Tests for the linear and non-linear relationship between two genes
3 months ago by
cwwong13
▴ 40
6
votes
5
replies
710
views
Tests for the linear and non-linear relationship between two genes
ode
drc
correlation
regression
rnaseq
updated 3 months ago by
ATpoint
82k • written 3 months ago by
cwwong13
▴ 40
0
votes
0
replies
2.0k
views
Comment:
Comment: Technical replicates in Microarray data
4 months ago by
cwwong13
▴ 40
0
votes
1
reply
362
views
Testing the interaction term in single-cell RNAseq DEG analysis
DEG
scRNAseq
Seurat
updated 5 months ago by
ATpoint
82k • written 5 months ago by
cwwong13
▴ 40
0
votes
0
replies
1.2k
views
Comment:
Comment: Highly inflated p-values in GWAS by regenie
7 months ago by
cwwong13
▴ 40
0
votes
0
replies
1.2k
views
Comment:
Comment: Highly inflated p-values in GWAS by regenie
7 months ago by
cwwong13
▴ 40
0
votes
1
reply
1.2k
views
Comment:
Comment: Highly inflated p-values in GWAS by regenie
7 months ago by
cwwong13
▴ 40
0
votes
7
replies
1.2k
views
Highly inflated p-values in GWAS by regenie
regenie
plink
gwas
7 months ago by
cwwong13
▴ 40
0
votes
1
reply
678
views
Comment:
Comment: Keplen Meyer Curve Dropping to zero
8 months ago by
cwwong13
▴ 40
0
votes
0
replies
839
views
Comment:
Comment: Should we assume UMI-based scRNAseq data is not compositional?
8 months ago by
cwwong13
▴ 40
0
votes
2
replies
839
views
Comment:
Comment: Should we assume UMI-based scRNAseq data is not compositional?
9 months ago by
cwwong13
▴ 40
2
votes
7
replies
839
views
Should we assume UMI-based scRNAseq data is not compositional?
compositional
scRNAseq
8 months ago by
cwwong13
▴ 40
0
votes
1
reply
510
views
Is it proper to compare two WGCNA matrixes if they were raised to different power (soft threshold)?
WGCNA
r
RNA-seq
cluster
updated 9 months ago by
Ram
43k • written 9 months ago by
cwwong13
▴ 40
0
votes
0
replies
766
views
Comment:
Comment: Summarizing permutation test/ bootstrap result for multiple samples for single-
13 months ago by
cwwong13
▴ 40
0
votes
0
replies
766
views
Comment:
Comment: Summarizing permutation test/ bootstrap result for multiple samples for single-
13 months ago by
cwwong13
▴ 40
0
votes
3
replies
766
views
Summarizing permutation test/ bootstrap result for multiple samples for single-cell RNAseq data
single-cell
RNA-seq
13 months ago by
cwwong13
▴ 40
0
votes
1
reply
495
views
overlay ggplot graphs like those merging channels in imagej
ggplot
imagej
updated 14 months ago by
LChart
3.9k • written 14 months ago by
cwwong13
▴ 40
1
vote
0
replies
455
views
What are the differences between GSVA and ssGSEA (in layman's term)?
ssGSEA
GSVA
GSEA
14 months ago by
cwwong13
▴ 40
0
votes
0
replies
762
views
Comment:
Comment: Do I need to adjust the pvalue if I am only going to test one gene from omics da
14 months ago by
cwwong13
▴ 40
0
votes
0
replies
762
views
Comment:
Comment: Do I need to adjust the pvalue if I am only going to test one gene from omics da
14 months ago by
cwwong13
▴ 40
3
votes
4
replies
762
views
Do I need to adjust the pvalue if I am only going to test one gene from omics data containing many genes?
pvalue
Omics
RNAseq
14 months ago by
cwwong13
▴ 40
2
votes
2
replies
670
views
List of genes that are uniquely found in human (not in mouse)
orthologue
genome
gene
updated 17 months ago by
Ram
43k • written 17 months ago by
cwwong13
▴ 40
0
votes
1
reply
10k
views
Comment:
Comment: map cDNA position on genomic position
17 months ago by
cwwong13
▴ 40
0
votes
1
reply
801
views
Is it possible to infer whether a patient is with homozygous with the alternative alleles (at two different location)
association
WES
variant
genome
updated 23 months ago by
d-cameron
★ 2.9k • written 2.8 years ago by
cwwong13
▴ 40
0
votes
0
replies
1.1k
views
Comment:
Comment: Determine sex/ gender of a mouse cell line via sequencing data
23 months ago by
cwwong13
▴ 40
2
votes
3
replies
1.1k
views
Determine sex/ gender of a mouse cell line via sequencing data
sequencing
line
cell
updated 22 months ago by
Amos Bairoch
▴ 120 • written 23 months ago by
cwwong13
▴ 40
0
votes
0
replies
2.1k
views
Comment:
Comment: The modules are not clustered together after WGCNA
24 months ago by
cwwong13
▴ 40
0
votes
1
reply
2.1k
views
Comment:
Comment: The modules are not clustered together after WGCNA
2.0 years ago by
cwwong13
▴ 40
0
votes
1
reply
2.1k
views
Comment:
Comment: The modules are not clustered together after WGCNA
2.0 years ago by
cwwong13
▴ 40
0
votes
1
reply
2.1k
views
Comment:
Comment: The modules are not clustered together after WGCNA
2.0 years ago by
cwwong13
▴ 40
0
votes
1
reply
2.1k
views
Comment:
Comment: The modules are not clustered together after WGCNA
2.0 years ago by
cwwong13
▴ 40
1
vote
10
replies
2.1k
views
The modules are not clustered together after WGCNA
cluster
WGCNA
r
dendrograms
24 months ago by
cwwong13
▴ 40
2
votes
1
reply
710
views
Ways or packages to analyze single-cell RNAseq data that prepared following Tang's protocol
cell
RNAseq
seurat
single
updated 2.0 years ago by
ATpoint
82k • written 2.0 years ago by
cwwong13
▴ 40
0
votes
1
reply
810
views
Comment:
Comment: What is the current recommended way to process/ analyze Ion Torrent Proton RNAse
2.1 years ago by
cwwong13
▴ 40
1
vote
3
replies
810
views
What is the current recommended way to process/ analyze Ion Torrent Proton RNAseq data
RNAseq
Proton
Ion
analysis
Torrent
pipeline
processing
updated 2.1 years ago by
Istvan Albert
100k • written 2.2 years ago by
cwwong13
▴ 40
0
votes
3
replies
905
views
COVID-19 WGS sequencing for individuals having mRNA vaccination
mRNA
COVID
vaccine
WGS
updated 2.3 years ago by
5heikki
11k • written 2.3 years ago by
cwwong13
▴ 40
0
votes
0
replies
499
views
Molecular docking considerations
binding
affinity
vina
biology
docking
structural
ligand
2.5 years ago by
cwwong13
▴ 40
0
votes
1
reply
2.0k
views
Comment:
Comment: Proper way(s) to perform enrichment analysis in R
2.6 years ago by
cwwong13
▴ 40
4
votes
4
replies
2.0k
views
Proper way(s) to perform enrichment analysis in R
GSEA
analysis
enrichment
R
RNAseq
updated 2.6 years ago by
bigomics.team
▴ 90 • written 2.6 years ago by
cwwong13
▴ 40
0
votes
1
reply
4.0k
views
Comment:
Comment: normalization to "housekeeping" genes of RNAseq data vs qPCR result
2.7 years ago by
cwwong13
▴ 40
2
votes
4
replies
4.0k
views
normalization to "housekeeping" genes of RNAseq data vs qPCR result
qPCR
RNAseq
updated 2.7 years ago by
ATpoint
82k • written 2.7 years ago by
cwwong13
▴ 40
0
votes
1
reply
977
views
Comment:
Comment: Assessing how similar/ different of activated pathways between multiple groups o
2.7 years ago by
cwwong13
▴ 40
0
votes
3
replies
977
views
Assessing how similar/ different of activated pathways between multiple groups of samples
pathway
correlation
test
hypothesis
updated 2.7 years ago by
LauferVA
4.2k • written 2.7 years ago by
cwwong13
▴ 40
0
votes
0
replies
411
views
assessing relative contribution of samples/ organs towards a diseases in multi-tissue RNAseq
RNAseq
2.7 years ago by
cwwong13
▴ 40
0
votes
1
reply
648
views
Association analysis with SNP
association
WGS
GWAS
SNP
WES
updated 2.8 years ago by
Collin
▴ 1000 • written 2.8 years ago by
cwwong13
▴ 40
0
votes
0
replies
683
views
Comment:
Comment: program/ software to generate large synthetic benchmark gene/ protein interactio
2.8 years ago by
cwwong13
▴ 40
0
votes
2
replies
683
views
program/ software to generate large synthetic benchmark gene/ protein interaction network
PPI
interaction
benchmark
network
R
2.8 years ago by
cwwong13
▴ 40
73 results • Page
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