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Comment: Comment: Summarizing permutation test/ bootstrap result for multiple samples for single-
9 days ago by cwwong13 ▴ 20
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344
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Comment: Comment: Summarizing permutation test/ bootstrap result for multiple samples for single-
9 days ago by cwwong13 ▴ 20
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344
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Summarizing permutation test/ bootstrap result for multiple samples for single-cell RNAseq data
single-cell RNA-seq
9 days ago by cwwong13 ▴ 20
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1
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261
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overlay ggplot graphs like those merging channels in imagej
ggplot imagej
updated 26 days ago by 2.2k • written 27 days ago by ▴ 20
1
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0
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154
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What are the differences between GSVA and ssGSEA (in layman's term)?
ssGSEA GSVA GSEA
5 weeks ago by cwwong13 ▴ 20
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0
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361
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Comment: Comment: Do I need to adjust the pvalue if I am only going to test one gene from omics da
5 weeks ago by cwwong13 ▴ 20
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0
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361
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Comment: Comment: Do I need to adjust the pvalue if I am only going to test one gene from omics da
5 weeks ago by cwwong13 ▴ 20
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4
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361
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Do I need to adjust the pvalue if I am only going to test one gene from omics data containing many genes?
pvalue Omics RNAseq
5 weeks ago by cwwong13 ▴ 20
2
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2
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324
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List of genes that are uniquely found in human (not in mouse)
orthologue genome gene
updated 3 months ago by 38k • written 3 months ago by ▴ 20
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1
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9.0k
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Comment: Comment: map cDNA position on genomic position
4 months ago by cwwong13 ▴ 20
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1
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609
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Is it possible to infer whether a patient is with homozygous with the alternative alleles (at two different location)
association WES variant genome
updated 9 months ago by ★ 2.8k • written 20 months ago by ▴ 20
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632
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Comment: Comment: Determine sex/ gender of a mouse cell line via sequencing data
10 months ago by cwwong13 ▴ 20
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3
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632
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Determine sex/ gender of a mouse cell line via sequencing data
sequencing line cell
updated 9 months ago by ▴ 110 • written 10 months ago by ▴ 20
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0
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1.0k
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Comment: Comment: The modules are not clustered together after WGCNA
11 months ago by cwwong13 ▴ 20
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1
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1.0k
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Comment: Comment: The modules are not clustered together after WGCNA
11 months ago by cwwong13 ▴ 20
0
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1
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1.0k
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Comment: Comment: The modules are not clustered together after WGCNA
11 months ago by cwwong13 ▴ 20
0
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1
reply
1.0k
views
Comment: Comment: The modules are not clustered together after WGCNA
11 months ago by cwwong13 ▴ 20
0
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1
reply
1.0k
views
Comment: Comment: The modules are not clustered together after WGCNA
11 months ago by cwwong13 ▴ 20
1
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10
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1.0k
views
The modules are not clustered together after WGCNA
cluster WGCNA r dendrograms
11 months ago by cwwong13 ▴ 20
2
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1
reply
511
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Ways or packages to analyze single-cell RNAseq data that prepared following Tang's protocol
cell RNAseq seurat single
updated 11 months ago by 70k • written 11 months ago by ▴ 20
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1
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435
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Comment: Comment: What is the current recommended way to process/ analyze Ion Torrent Proton RNAse
12 months ago by cwwong13 ▴ 20
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3
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435
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What is the current recommended way to process/ analyze Ion Torrent Proton RNAseq data
RNAseq Proton Ion analysis Torrent pipeline processing
updated 12 months ago by 97k • written 12 months ago by ▴ 20
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3
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586
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COVID-19 WGS sequencing for individuals having mRNA vaccination
mRNA COVID vaccine WGS
updated 15 months ago by 11k • written 15 months ago by ▴ 20
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0
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335
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Molecular docking considerations
binding affinity vina biology docking structural ligand
17 months ago by cwwong13 ▴ 20
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1
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1.1k
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Comment: Comment: Proper way(s) to perform enrichment analysis in R
18 months ago by cwwong13 ▴ 20
4
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4
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1.1k
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Proper way(s) to perform enrichment analysis in R
GSEA analysis enrichment R RNAseq
updated 18 months ago by ▴ 90 • written 18 months ago by ▴ 20
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1
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2.0k
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Comment: Comment: normalization to "housekeeping" genes of RNAseq data vs qPCR result
19 months ago by cwwong13 ▴ 20
2
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4
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2.0k
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normalization to "housekeeping" genes of RNAseq data vs qPCR result
qPCR RNAseq
updated 19 months ago by 70k • written 19 months ago by ▴ 20
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1
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713
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Comment: Comment: Assessing how similar/ different of activated pathways between multiple groups o
19 months ago by cwwong13 ▴ 20
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3
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713
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Assessing how similar/ different of activated pathways between multiple groups of samples
pathway correlation test hypothesis
updated 19 months ago by ★ 2.5k • written 19 months ago by ▴ 20
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0
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261
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assessing relative contribution of samples/ organs towards a diseases in multi-tissue RNAseq
RNAseq
19 months ago by cwwong13 ▴ 20
0
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1
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457
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Association analysis with SNP
association WGS GWAS SNP WES
updated 20 months ago by ▴ 1000 • written 20 months ago by ▴ 20
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0
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486
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Comment: Comment: program/ software to generate large synthetic benchmark gene/ protein interactio
20 months ago by cwwong13 ▴ 20
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2
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486
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program/ software to generate large synthetic benchmark gene/ protein interaction network
PPI interaction benchmark network R
20 months ago by cwwong13 ▴ 20
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0
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9.6k
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Comment: Comment: How To Calculate Genetic Heterogeneity From Genotype Data - How Useful Is This M
20 months ago by cwwong13 ▴ 20
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1
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951
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Comment: Comment: sequencing adapter/ index when mixing two library preparation kit
20 months ago by cwwong13 ▴ 20
0
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1
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951
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Comment: Comment: sequencing adapter/ index when mixing two library preparation kit
21 months ago by cwwong13 ▴ 20
2
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6
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951
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sequencing adapter/ index when mixing two library preparation kit
adapter RNA-Seq illumina index
updated 20 months ago by 13k • written 21 months ago by ▴ 20
0
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0
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593
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Comment: Comment: different padj from DESeq2 when using different contrast input format
21 months ago by cwwong13 ▴ 20
0
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0
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593
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Comment: Comment: different padj from DESeq2 when using different contrast input format
21 months ago by cwwong13 ▴ 20
0
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4
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593
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different padj from DESeq2 when using different contrast input format
DESeq2 RNA-Seq
21 months ago by cwwong13 ▴ 20
0
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0
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475
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Focused pathway analysis
fgsea clusterProfiler GSEA KEGG pathway
22 months ago by cwwong13 ▴ 20
0
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1
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1.6k
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how to run and use the ENCODE ATAC-seq pipline
ATAC-seq ENCODE peak
updated 23 months ago by 21k • written 2.1 years ago by ▴ 20
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0
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1.3k
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Troubleshooting abnormal ATAC-seq diagnostic plots
QC Sequencing ATAC-seq Troubleshooting
22 months ago by cwwong13 ▴ 20
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1
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1.0k
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Comment: Comment: Can I pool RNA-seq library with ATAC-seq library and sequence in the same S4 lan
24 months ago by cwwong13 ▴ 20
3
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3
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1.0k
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Can I pool RNA-seq library with ATAC-seq library and sequence in the same S4 lane?
RNA-seq Sequencing ATAC-seq
updated 24 months ago by 127k • written 24 months ago by ▴ 20
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0
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1.4k
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Comment: Comment: Is it worth to analyzing low quality ATAC-seq data
24 months ago by cwwong13 ▴ 20
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2
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1.4k
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Is it worth to analyzing low quality ATAC-seq data
ATAC-seq QC TSS
24 months ago by cwwong13 ▴ 20
10
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5
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998
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Does DESeq2 and EdgeR account for the increased total RNA production in one of the experimental group
RNA-Seq DESeq2 EdgeR
updated 2.0 years ago by 16k • written 2.0 years ago by ▴ 20
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1
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755
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Confusion of the input format for DESeq2 and EdgeR for bulk- and scRNA-seq
DESeq2 EdgeR RNA-Seq scRNA-seq
2.1 years ago by cwwong13 ▴ 20
57 results • Page 1 of 2
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