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Should homozygotes and heterozygotes be considered differently in GWAS analyses?
homozygote GWAS heterozygote
updated 3 months ago by 4.2k • written 20 months ago by ▴ 160
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0
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334
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How to genome-wide association analysis using survival analysis in Plink?
survival GWAS Plink
17 months ago by Qingyang Xiao ▴ 160
0
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2
replies
568
views
How to get the number of distinct variants genotyped from VCF or bed/bim files (GWAS)?
Plink bed GWAS VCF
updated 18 months ago by 161k • written 18 months ago by ▴ 160
0
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1
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495
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Can B factors only be calculated from experimentally determined protein structures (e.g. pdb files)?
B-factor pdb protein-structure
updated 16 months ago by 43k • written 19 months ago by ▴ 160
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0
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344
views
How to get evolutionary conservation score
protein proteomics EVmutation Evolutionary conservation
19 months ago by Qingyang Xiao ▴ 160
4
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6
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1.3k
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How to extract all the IDs of VCF file for GWAS analyses?
VCF GWAS ID sample
updated 20 months ago by 87k • written 20 months ago by ▴ 160
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1
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1.3k
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Comment: Comment: How to extract all the IDs of VCF file for GWAS analyses?
20 months ago by Qingyang Xiao ▴ 160
0
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0
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285
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Are the mixed populations of different ancestries problematic for GWAS analyses?
plink population structure GWAS pca
20 months ago by Qingyang Xiao ▴ 160
0
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2
replies
852
views
How to check the quality of VCF file for GWAS analysis
VCF GWAS control Quality
updated 20 months ago by ▴ 520 • written 20 months ago by ▴ 160
0
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1
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768
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Comment: Comment: How to extract info of samples of interest from VCF file?
20 months ago by Qingyang Xiao ▴ 160
5
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3
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768
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How to extract info of samples of interest from VCF file?
Unix VCF subset command GWAS
updated 20 months ago by 87k • written 20 months ago by ▴ 160
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0
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2.6k
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Comment: Comment: How can I get B factor value of a specific amino acid of a protein sequence, fro
20 months ago by Qingyang Xiao ▴ 160
1
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3
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2.6k
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How can I get B factor value of a specific amino acid of a protein sequence, from DSSP?
DSSP temperature Protein factor B-factor
20 months ago by Qingyang Xiao ▴ 160
11
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7
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4.6k
views
6 follow
Download hundreds of genes' variant csv from gnomAD
genome SNP
updated 2.2 years ago by ▴ 50 • written 5.1 years ago by ▴ 160
1
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2
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4.4k
views
LOFTEE doesnt actually annotate Loss-of-function variants
genome snp VEP ensembl
4.3 years ago by Qingyang Xiao ▴ 160
0
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1
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4.6k
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Comment: C: Download hundreds of genes' variant csv from gnomAD
4.3 years ago by Qingyang Xiao ▴ 160
0
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0
replies
921
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dbSNP allele reference
snp genome assembly
5.0 years ago by Qingyang Xiao ▴ 160
0
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0
replies
1.2k
views
Targeted sequencing and meQTL/eQTM/eQTL
SNP rna-seq R next-gen
5.8 years ago by Qingyang Xiao ▴ 160
20
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24
replies
6.9k
views
6 follow
Forum: Python or R
RNA-Seq alignment next-gen-sequencing
updated 11 months ago by 43k • written 5.9 years ago by ▴ 160
21
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24
replies
33k
views
10 follow
How to read fastq file with Python
sequencing next-gen
updated 5.9 years ago by 35k • written 5.9 years ago by ▴ 160
1
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1
reply
3.4k
views
How to have access to TCGA raw data?
RNA-Seq next-gen sequencing
updated 5.9 years ago by 141k • written 5.9 years ago by ▴ 160
1
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1
reply
1.0k
views
Answer: A: Identify lncRNAs - search for tools
6.1 years ago by Qingyang Xiao ▴ 160
0
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1
reply
859
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identifying contribution of specific cell subpopulation from mixture,with RNA-Seq data
RNA-Seq next-gen sequencing
6.1 years ago by Qingyang Xiao ▴ 160
0
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1
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1.4k
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Comment: C: Difference between prediction of protein-protein interaction and mRNA-mRNA inter
6.1 years ago by Qingyang Xiao ▴ 160
2
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3
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1.4k
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Difference between prediction of protein-protein interaction and mRNA-mRNA interaction
next-gen sequencing rna-seq
updated 6.2 years ago by 87k • written 6.2 years ago by ▴ 160
4
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2
replies
2.2k
views
FFPE samples for NGS
next-gen sequencing RNA-Seq SNP
updated 6.2 years ago by 87k • written 6.2 years ago by ▴ 160
3
votes
3
replies
1.4k
views
Packages/modules for CNV, Indels, SNPs analysis
snp R sequence alignment genome
updated 6.2 years ago by ▴ 360 • written 6.2 years ago by ▴ 160
0
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1
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1.1k
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Does bisulfite sequencing need higher sequencing depth than regular genomic sequencing?
genome sequencing next-gen snp
updated 6.2 years ago by 22k • written 6.2 years ago by ▴ 160
0
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0
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24k
views
Comment: C: Difference between tSNE and PCA analysis
6.2 years ago by Qingyang Xiao ▴ 160
31
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14
replies
24k
views
7 follow
Difference between tSNE and PCA analysis
next-gen rna-seq
updated 9 weeks ago by 22k • written 6.3 years ago by ▴ 160
1
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1
reply
24k
views
Comment: C: Difference between tSNE and PCA analysis
6.3 years ago by Qingyang Xiao ▴ 160
2
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3
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1.3k
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Forum: Relationship of bioinformatics analysis tricks and publication impactor factor
next-gen
updated 11 months ago by 43k • written 6.3 years ago by ▴ 160
1
vote
2
replies
861
views
Question of " mutation correlation"
sequence next-gen genome
updated 19 months ago by 43k • written 6.3 years ago by ▴ 160
0
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0
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1.7k
views
Comment: C: Comparision of R packages in RNA-Seq
6.3 years ago by Qingyang Xiao ▴ 160
3
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3
replies
1.7k
views
Comparision of R packages in RNA-Seq
RNA-Seq next-gen R
updated 6.3 years ago by ★ 3.0k • written 6.3 years ago by ▴ 160
2
votes
2
replies
1.7k
views
RNA-Seq data avaliability online
rna-seq R next-gen sequencing
updated 6.3 years ago by ★ 4.0k • written 6.3 years ago by ▴ 160
1
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2
replies
5.0k
views
How to mark significance in R-making boxplot
R
updated 6.4 years ago by 13k • written 6.4 years ago by ▴ 160
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