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Should homozygotes and heterozygotes be considered differently in GWAS analyses?
homozygote GWAS heterozygote
updated 6 months ago by 4.3k • written 23 months ago by ▴ 160
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0
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400
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How to genome-wide association analysis using survival analysis in Plink?
survival GWAS Plink
20 months ago by Qingyang Xiao ▴ 160
0
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2
replies
616
views
How to get the number of distinct variants genotyped from VCF or bed/bim files (GWAS)?
Plink bed GWAS VCF
updated 21 months ago by 163k • written 21 months ago by ▴ 160
0
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1
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536
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Can B factors only be calculated from experimentally determined protein structures (e.g. pdb files)?
B-factor pdb protein-structure
updated 19 months ago by 44k • written 22 months ago by ▴ 160
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0
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381
views
How to get evolutionary conservation score
protein proteomics EVmutation Evolutionary conservation
22 months ago by Qingyang Xiao ▴ 160
4
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6
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1.4k
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How to extract all the IDs of VCF file for GWAS analyses?
VCF GWAS ID sample
updated 23 months ago by 88k • written 23 months ago by ▴ 160
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1
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1.4k
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Comment: Comment: How to extract all the IDs of VCF file for GWAS analyses?
23 months ago by Qingyang Xiao ▴ 160
0
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0
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312
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Are the mixed populations of different ancestries problematic for GWAS analyses?
plink population structure GWAS pca
23 months ago by Qingyang Xiao ▴ 160
0
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2
replies
937
views
How to check the quality of VCF file for GWAS analysis
VCF GWAS control Quality
updated 23 months ago by ▴ 520 • written 23 months ago by ▴ 160
0
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1
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867
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Comment: Comment: How to extract info of samples of interest from VCF file?
23 months ago by Qingyang Xiao ▴ 160
5
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3
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867
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How to extract info of samples of interest from VCF file?
Unix VCF subset command GWAS
updated 23 months ago by 88k • written 23 months ago by ▴ 160
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0
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3.1k
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Comment: Comment: How can I get B factor value of a specific amino acid of a protein sequence, fro
23 months ago by Qingyang Xiao ▴ 160
1
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3
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3.1k
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How can I get B factor value of a specific amino acid of a protein sequence, from DSSP?
DSSP temperature Protein factor B-factor
23 months ago by Qingyang Xiao ▴ 160
11
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7
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4.8k
views
6 follow
Download hundreds of genes' variant csv from gnomAD
genome SNP
updated 2.5 years ago by ▴ 50 • written 5.3 years ago by ▴ 160
1
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2
replies
4.5k
views
LOFTEE doesnt actually annotate Loss-of-function variants
genome snp VEP ensembl
4.5 years ago by Qingyang Xiao ▴ 160
0
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1
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4.8k
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Comment: C: Download hundreds of genes' variant csv from gnomAD
4.5 years ago by Qingyang Xiao ▴ 160
0
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0
replies
938
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dbSNP allele reference
snp genome assembly
5.3 years ago by Qingyang Xiao ▴ 160
0
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0
replies
1.2k
views
Targeted sequencing and meQTL/eQTM/eQTL
SNP rna-seq R next-gen
6.1 years ago by Qingyang Xiao ▴ 160
20
votes
24
replies
7.1k
views
6 follow
Forum: Python or R
RNA-Seq alignment next-gen-sequencing
updated 14 months ago by 44k • written 6.2 years ago by ▴ 160
21
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24
replies
34k
views
10 follow
How to read fastq file with Python
sequencing next-gen
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 160
1
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1
reply
3.4k
views
How to have access to TCGA raw data?
RNA-Seq next-gen sequencing
updated 6.2 years ago by 144k • written 6.2 years ago by ▴ 160
1
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1
reply
1.1k
views
Answer: A: Identify lncRNAs - search for tools
6.4 years ago by Qingyang Xiao ▴ 160
0
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1
reply
885
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identifying contribution of specific cell subpopulation from mixture,with RNA-Seq data
RNA-Seq next-gen sequencing
6.4 years ago by Qingyang Xiao ▴ 160
0
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1
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1.4k
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Comment: C: Difference between prediction of protein-protein interaction and mRNA-mRNA inter
6.4 years ago by Qingyang Xiao ▴ 160
2
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3
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1.4k
views
Difference between prediction of protein-protein interaction and mRNA-mRNA interaction
next-gen sequencing rna-seq
updated 6.4 years ago by 88k • written 6.4 years ago by ▴ 160
4
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2
replies
2.2k
views
FFPE samples for NGS
next-gen sequencing RNA-Seq SNP
updated 6.5 years ago by 88k • written 6.5 years ago by ▴ 160
3
votes
3
replies
1.5k
views
Packages/modules for CNV, Indels, SNPs analysis
snp R sequence alignment genome
updated 6.5 years ago by ▴ 370 • written 6.5 years ago by ▴ 160
0
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1
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1.2k
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Does bisulfite sequencing need higher sequencing depth than regular genomic sequencing?
genome sequencing next-gen snp
updated 6.5 years ago by 22k • written 6.5 years ago by ▴ 160
0
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0
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25k
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Comment: C: Difference between tSNE and PCA analysis
6.5 years ago by Qingyang Xiao ▴ 160
31
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14
replies
25k
views
7 follow
Difference between tSNE and PCA analysis
next-gen rna-seq
updated 5 months ago by 22k • written 6.5 years ago by ▴ 160
1
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1
reply
25k
views
Comment: C: Difference between tSNE and PCA analysis
6.5 years ago by Qingyang Xiao ▴ 160
2
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3
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1.4k
views
Forum: Relationship of bioinformatics analysis tricks and publication impactor factor
next-gen
updated 14 months ago by 44k • written 6.5 years ago by ▴ 160
1
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2
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890
views
Question of " mutation correlation"
sequence next-gen genome
updated 22 months ago by 44k • written 6.5 years ago by ▴ 160
0
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0
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1.8k
views
Comment: C: Comparision of R packages in RNA-Seq
6.5 years ago by Qingyang Xiao ▴ 160
3
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3
replies
1.8k
views
Comparision of R packages in RNA-Seq
RNA-Seq next-gen R
updated 6.5 years ago by ★ 3.0k • written 6.5 years ago by ▴ 160
2
votes
2
replies
1.8k
views
RNA-Seq data avaliability online
rna-seq R next-gen sequencing
updated 6.5 years ago by ★ 4.1k • written 6.5 years ago by ▴ 160
1
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2
replies
5.1k
views
How to mark significance in R-making boxplot
R
updated 6.6 years ago by 13k • written 6.6 years ago by ▴ 160
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