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Should homozygotes and heterozygotes be considered differently in GWAS analyses?
homozygote GWAS heterozygote
updated 22 months ago by 4.8k • written 3.2 years ago by ▴ 160
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0
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698
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How to genome-wide association analysis using survival analysis in Plink?
survival GWAS Plink
3.0 years ago by Qingyang Xiao ▴ 160
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2
replies
912
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How to get the number of distinct variants genotyped from VCF or bed/bim files (GWAS)?
Plink bed GWAS VCF
updated 3.0 years ago by 166k • written 3.0 years ago by ▴ 160
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1
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907
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Can B factors only be calculated from experimentally determined protein structures (e.g. pdb files)?
B-factor pdb protein-structure
updated 2.9 years ago by 45k • written 3.1 years ago by ▴ 160
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0
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654
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How to get evolutionary conservation score
protein proteomics EVmutation Evolutionary conservation
3.2 years ago by Qingyang Xiao ▴ 160
4
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6
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2.4k
views
How to extract all the IDs of VCF file for GWAS analyses?
VCF GWAS ID sample
updated 3.2 years ago by 89k • written 3.2 years ago by ▴ 160
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1
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2.4k
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Comment: Comment: How to extract all the IDs of VCF file for GWAS analyses?
3.2 years ago by Qingyang Xiao ▴ 160
0
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0
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533
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Are the mixed populations of different ancestries problematic for GWAS analyses?
plink population structure GWAS pca
3.2 years ago by Qingyang Xiao ▴ 160
0
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2
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1.6k
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How to check the quality of VCF file for GWAS analysis
VCF GWAS control Quality
updated 3.2 years ago by ▴ 540 • written 3.2 years ago by ▴ 160
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1
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1.5k
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Comment: Comment: How to extract info of samples of interest from VCF file?
3.2 years ago by Qingyang Xiao ▴ 160
5
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3
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1.5k
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How to extract info of samples of interest from VCF file?
Unix VCF subset command GWAS
updated 3.2 years ago by 89k • written 3.2 years ago by ▴ 160
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0
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5.4k
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Comment: Comment: How can I get B factor value of a specific amino acid of a protein sequence, fro
3.2 years ago by Qingyang Xiao ▴ 160
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3
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5.4k
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How can I get B factor value of a specific amino acid of a protein sequence, from DSSP?
DSSP temperature Protein factor B-factor
3.2 years ago by Qingyang Xiao ▴ 160
11
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7
replies
6.9k
views
6 follow
Download hundreds of genes' variant csv from gnomAD
genome SNP
updated 3.8 years ago by ▴ 50 • written 6.6 years ago by ▴ 160
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2
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5.3k
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LOFTEE doesnt actually annotate Loss-of-function variants
genome snp VEP ensembl
5.8 years ago by Qingyang Xiao ▴ 160
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1
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6.9k
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Comment: C: Download hundreds of genes' variant csv from gnomAD
5.8 years ago by Qingyang Xiao ▴ 160
0
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0
replies
1.1k
views
dbSNP allele reference
snp genome assembly
6.6 years ago by Qingyang Xiao ▴ 160
0
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0
replies
1.4k
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Targeted sequencing and meQTL/eQTM/eQTL
SNP rna-seq R next-gen
7.4 years ago by Qingyang Xiao ▴ 160
20
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24
replies
8.5k
views
6 follow
Forum: Python or R
RNA-Seq alignment next-gen-sequencing
updated 2.5 years ago by 45k • written 7.4 years ago by ▴ 160
21
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24
replies
38k
views
10 follow
How to read fastq file with Python
sequencing next-gen
updated 7.4 years ago by 36k • written 7.4 years ago by ▴ 160
1
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1
reply
3.9k
views
How to have access to TCGA raw data?
RNA-Seq next-gen sequencing
updated 7.5 years ago by 154k • written 7.5 years ago by ▴ 160
1
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1
reply
1.4k
views
Answer: A: Identify lncRNAs - search for tools
7.7 years ago by Qingyang Xiao ▴ 160
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1
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1.1k
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identifying contribution of specific cell subpopulation from mixture,with RNA-Seq data
RNA-Seq next-gen sequencing
7.7 years ago by Qingyang Xiao ▴ 160
0
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1
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1.8k
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Comment: C: Difference between prediction of protein-protein interaction and mRNA-mRNA inter
7.7 years ago by Qingyang Xiao ▴ 160
2
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3
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1.8k
views
Difference between prediction of protein-protein interaction and mRNA-mRNA interaction
next-gen sequencing rna-seq
updated 7.7 years ago by 89k • written 7.7 years ago by ▴ 160
4
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2
replies
2.7k
views
FFPE samples for NGS
next-gen sequencing RNA-Seq SNP
updated 7.8 years ago by 89k • written 7.8 years ago by ▴ 160
3
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3
replies
2.0k
views
Packages/modules for CNV, Indels, SNPs analysis
snp R sequence alignment genome
updated 7.8 years ago by ▴ 400 • written 7.8 years ago by ▴ 160
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1
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1.5k
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Does bisulfite sequencing need higher sequencing depth than regular genomic sequencing?
genome sequencing next-gen snp
updated 7.8 years ago by 22k • written 7.8 years ago by ▴ 160
0
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0
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27k
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Comment: C: Difference between tSNE and PCA analysis
7.8 years ago by Qingyang Xiao ▴ 160
31
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14
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27k
views
7 follow
Difference between tSNE and PCA analysis
next-gen rna-seq
updated 20 months ago by 23k • written 7.8 years ago by ▴ 160
1
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1
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27k
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Comment: C: Difference between tSNE and PCA analysis
7.8 years ago by Qingyang Xiao ▴ 160
2
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3
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1.7k
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Forum: Relationship of bioinformatics analysis tricks and publication impactor factor
next-gen
updated 2.5 years ago by 45k • written 7.8 years ago by ▴ 160
1
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2
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1.2k
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Question of " mutation correlation"
sequence next-gen genome
updated 3.2 years ago by 45k • written 7.8 years ago by ▴ 160
0
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0
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2.1k
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Comment: C: Comparision of R packages in RNA-Seq
7.8 years ago by Qingyang Xiao ▴ 160
3
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3
replies
2.1k
views
Comparision of R packages in RNA-Seq
RNA-Seq next-gen R
updated 7.8 years ago by ★ 3.0k • written 7.8 years ago by ▴ 160
2
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2
replies
2.1k
views
RNA-Seq data avaliability online
rna-seq R next-gen sequencing
updated 7.8 years ago by ★ 4.2k • written 7.8 years ago by ▴ 160
1
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2
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5.5k
views
How to mark significance in R-making boxplot
R
updated 7.9 years ago by 13k • written 7.9 years ago by ▴ 160
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