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8
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4
replies
2.0k
views
Plot genes along scaffolds and sort scaffolds according to their length
R plot genes scaffold
updated 14 months ago by ▴ 90 • written 4.6 years ago by ▴ 130
2
votes
1
reply
576
views
How do you add an ORF that overlaps the two regions where a circular genome is cut in Genbank?
genbank
22 months ago by Chvatil ▴ 130
2
votes
0
replies
576
views
Answer: Answer: How do you add an ORF that overlaps the two regions where a circular genome is c
22 months ago by Chvatil ▴ 130
2
votes
1
reply
827
views
Looking for Synteny blocks database in arthopods
database synteny
updated 3.3 years ago by ★ 4.2k • written 3.3 years ago by ▴ 130
0
votes
0
replies
2.8k
views
Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
3.7 years ago by Chvatil ▴ 130
0
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0
replies
2.8k
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Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
3.7 years ago by Chvatil ▴ 130
0
votes
0
replies
2.8k
views
Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
3.7 years ago by Chvatil ▴ 130
0
votes
1
reply
2.8k
views
Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
3.7 years ago by Chvatil ▴ 130
4
votes
7
replies
2.8k
views
Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
uniprot fetch fasta proteome bash
3.7 years ago by Chvatil ▴ 130
0
votes
0
replies
528
views
Gene ontology analysis on viral proteins
gene go ontology
3.8 years ago by Chvatil ▴ 130
0
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1
reply
2.4k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.9 years ago by Chvatil ▴ 130
0
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0
replies
2.4k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.9 years ago by Chvatil ▴ 130
0
votes
2
replies
2.4k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.9 years ago by Chvatil ▴ 130
0
votes
1
reply
2.4k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.9 years ago by Chvatil ▴ 130
0
votes
1
reply
2.4k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.9 years ago by Chvatil ▴ 130
0
votes
0
replies
2.4k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
3.9 years ago by Chvatil ▴ 130
2
votes
11
replies
2.4k
views
Using snakemake in order to download reads and run hisat2 mapping
hisat2 snakemake python
updated 3.9 years ago by 23k • written 3.9 years ago by ▴ 130
0
votes
1
reply
1.0k
views
Add features on newick tree (then by creating a NHX format)
newick nhx phylogeny python r
4.1 years ago by Chvatil ▴ 130
7
votes
1
reply
1.5k
views
Calculate tetranucleotide frequency deviation on python
biopython python TNFs
updated 4.2 years ago by ★ 29k • written 4.2 years ago by ▴ 130
0
votes
1
reply
771
views
Find repeat regions on 100 eukaryotic assemblies
repeat Assembly
updated 4.3 years ago by 7.3k • written 4.3 years ago by ▴ 130
0
votes
1
reply
1.7k
views
Comment: C: Question about codeml
4.3 years ago by Chvatil ▴ 130
0
votes
4
replies
1.7k
views
Question about codeml
codeml paml phylogeny tree ds
updated 3.3 years ago by ▴ 190 • written 4.3 years ago by ▴ 130
0
votes
0
replies
1.3k
views
Runmode = -2 in Biopython PAML impossible ?
paml codeml biopython python3
4.3 years ago by Chvatil ▴ 130
0
votes
0
replies
862
views
Programme to calculate dN/dS between pair of sequences in a seq alignment
gene dn/ds codeml paml sequence
4.3 years ago by Chvatil ▴ 130
3
votes
1
reply
929
views
Extract specific variant genome ID from a VCF file
variant genome vcf
updated 4.4 years ago by 14k • written 4.4 years ago by ▴ 130
0
votes
0
replies
2.8k
views
Comment: C: Difference between mate-pair, paired-end and long read
4.4 years ago by Chvatil ▴ 130
0
votes
1
reply
2.8k
views
Comment: C: Difference between mate-pair, paired-end and long read
4.4 years ago by Chvatil ▴ 130
4
votes
5
replies
2.8k
views
Difference between mate-pair, paired-end and long read
assembly read
4.4 years ago by Chvatil ▴ 130
0
votes
0
replies
640
views
retrieve the properties of the reads on NCBI on the command line
Assembly reads ncbi
4.4 years ago by Chvatil ▴ 130
0
votes
0
replies
6.3k
views
Comment: C: HISAT2- (ERR): hisat2-align exited with value 134
4.5 years ago by Chvatil ▴ 130
0
votes
1
reply
6.3k
views
Comment: C: HISAT2- (ERR): hisat2-align exited with value 134
4.5 years ago by Chvatil ▴ 130
0
votes
0
replies
6.3k
views
Comment: C: HISAT2- (ERR): hisat2-align exited with value 134
4.5 years ago by Chvatil ▴ 130
0
votes
0
replies
642
views
detect and correct misassemblies in eucaryotic scaffolds
reapr mec Assembly
4.5 years ago by Chvatil ▴ 130
2
votes
5
replies
6.3k
views
HISAT2- (ERR): hisat2-align exited with value 134
hisat mapping
updated 4.5 years ago by ★ 1.4k • written 4.5 years ago by ▴ 130
2
votes
3
replies
6.7k
views
Size of the nr database fasta file?
nr ncbi database
updated 4.7 years ago by ▴ 460 • written 4.7 years ago by ▴ 130
0
votes
0
replies
6.7k
views
Comment: C: Size of the nr database fasta file?
4.7 years ago by Chvatil ▴ 130
3
votes
2
replies
1.1k
views
Eucaryotic gene predictor within eucaryote genome
gene
updated 4.7 years ago by 9.2k • written 4.7 years ago by ▴ 130
0
votes
0
replies
1.2k
views
disable the SRA cache in HISAT2
hisat rnaseq mapping
4.7 years ago by Chvatil ▴ 130
0
votes
0
replies
1.0k
views
Comment: C: Test if a list of genes with coordinates are expressed (hisat2 data)
4.7 years ago by Chvatil ▴ 130
0
votes
3
replies
1.0k
views
Test if a list of genes with coordinates are expressed (hisat2 data)
RNA-Seq transcription
updated 4.7 years ago by ▴ 230 • written 4.7 years ago by ▴ 130
0
votes
0
replies
1.9k
views
Comment: C: Using Bowtie and SRA mode
4.8 years ago by Chvatil ▴ 130
0
votes
1
reply
1.9k
views
Comment: C: Using Bowtie and SRA mode
4.8 years ago by Chvatil ▴ 130
0
votes
1
reply
1.9k
views
Comment: C: Using Bowtie and SRA mode
4.8 years ago by Chvatil ▴ 130
0
votes
6
replies
1.9k
views
Using Bowtie and SRA mode
bowtie mapping
4.8 years ago by Chvatil ▴ 130
0
votes
0
replies
1.6k
views
Comment: C: Create my own universel GO db from QuickGO in R
4.9 years ago by Chvatil ▴ 130
0
votes
2
replies
1.6k
views
Create my own universel GO db from QuickGO in R
GO ontology R
4.9 years ago by Chvatil ▴ 130
0
votes
1
reply
889
views
Plot loci on scaffold (graphic visualization in command line)
sequence genome scaffold
updated 5.0 years ago by 45k • written 5.0 years ago by ▴ 130
0
votes
1
reply
777
views
Find informations about virus families and their genomic structure
ncbi
5.0 years ago by Chvatil ▴ 130
0
votes
0
replies
777
views
Comment: A: Find informations about virus families and their genomic structure
5.0 years ago by Chvatil ▴ 130
0
votes
0
replies
1.0k
views
Comment: C: Get sequencing informations from NCBI with acc number
5.0 years ago by Chvatil ▴ 130
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