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comments
8
votes
4
replies
1.8k
views
Plot genes along scaffolds and sort scaffolds according to their length
R
plot
genes
scaffold
updated 10 months ago by
n.s.j.vandervelden
▴ 90 • written 4.3 years ago by
Chvatil
▴ 130
2
votes
1
reply
501
views
How do you add an ORF that overlaps the two regions where a circular genome is cut in Genbank?
genbank
18 months ago by
Chvatil
▴ 130
2
votes
0
replies
501
views
Answer:
Answer: How do you add an ORF that overlaps the two regions where a circular genome is c
18 months ago by
Chvatil
▴ 130
2
votes
1
reply
755
views
Looking for Synteny blocks database in arthopods
database
synteny
updated 3.0 years ago by
cmdcolin
★ 4.0k • written 3.0 years ago by
Chvatil
▴ 130
0
votes
0
replies
2.4k
views
Comment:
Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
3.4 years ago by
Chvatil
▴ 130
0
votes
0
replies
2.4k
views
Comment:
Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
3.4 years ago by
Chvatil
▴ 130
0
votes
0
replies
2.4k
views
Comment:
Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
3.4 years ago by
Chvatil
▴ 130
0
votes
1
reply
2.4k
views
Comment:
Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
3.4 years ago by
Chvatil
▴ 130
4
votes
7
replies
2.4k
views
Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
uniprot
fetch
fasta
proteome
bash
3.4 years ago by
Chvatil
▴ 130
0
votes
0
replies
489
views
Gene ontology analysis on viral proteins
gene
go
ontology
3.5 years ago by
Chvatil
▴ 130
0
votes
1
reply
2.2k
views
Comment:
Comment: Using snakemake in order to download reads and run hisat2 mapping
3.6 years ago by
Chvatil
▴ 130
0
votes
0
replies
2.2k
views
Comment:
Comment: Using snakemake in order to download reads and run hisat2 mapping
3.6 years ago by
Chvatil
▴ 130
0
votes
2
replies
2.2k
views
Comment:
Comment: Using snakemake in order to download reads and run hisat2 mapping
3.6 years ago by
Chvatil
▴ 130
0
votes
1
reply
2.2k
views
Comment:
Comment: Using snakemake in order to download reads and run hisat2 mapping
3.6 years ago by
Chvatil
▴ 130
0
votes
1
reply
2.2k
views
Comment:
Comment: Using snakemake in order to download reads and run hisat2 mapping
3.6 years ago by
Chvatil
▴ 130
0
votes
0
replies
2.2k
views
Comment:
Comment: Using snakemake in order to download reads and run hisat2 mapping
3.6 years ago by
Chvatil
▴ 130
2
votes
11
replies
2.2k
views
Using snakemake in order to download reads and run hisat2 mapping
hisat2
snakemake
python
updated 3.6 years ago by
Jeremy Leipzig
22k • written 3.6 years ago by
Chvatil
▴ 130
0
votes
1
reply
973
views
Add features on newick tree (then by creating a NHX format)
newick
nhx
phylogeny
python
r
3.8 years ago by
Chvatil
▴ 130
7
votes
1
reply
1.4k
views
Calculate tetranucleotide frequency deviation on python
biopython
python
TNFs
updated 3.9 years ago by
Mensur Dlakic
★ 28k • written 3.9 years ago by
Chvatil
▴ 130
0
votes
1
reply
706
views
Find repeat regions on 100 eukaryotic assemblies
repeat
Assembly
updated 4.0 years ago by
colindaven
7.0k • written 4.0 years ago by
Chvatil
▴ 130
0
votes
1
reply
1.5k
views
Comment:
C: Question about codeml
4.0 years ago by
Chvatil
▴ 130
0
votes
4
replies
1.5k
views
Question about codeml
codeml
paml
phylogeny
tree
ds
updated 3.1 years ago by
Eva_Maria
▴ 190 • written 4.0 years ago by
Chvatil
▴ 130
0
votes
0
replies
1.2k
views
Runmode = -2 in Biopython PAML impossible ?
paml
codeml
biopython
python3
4.0 years ago by
Chvatil
▴ 130
0
votes
0
replies
798
views
Programme to calculate dN/dS between pair of sequences in a seq alignment
gene
dn/ds
codeml
paml
sequence
4.1 years ago by
Chvatil
▴ 130
3
votes
1
reply
858
views
Extract specific variant genome ID from a VCF file
variant
genome
vcf
updated 4.1 years ago by
Jorge Amigo
14k • written 4.1 years ago by
Chvatil
▴ 130
0
votes
0
replies
2.5k
views
Comment:
C: Difference between mate-pair, paired-end and long read
4.1 years ago by
Chvatil
▴ 130
0
votes
1
reply
2.5k
views
Comment:
C: Difference between mate-pair, paired-end and long read
4.1 years ago by
Chvatil
▴ 130
4
votes
5
replies
2.5k
views
Difference between mate-pair, paired-end and long read
assembly
read
4.1 years ago by
Chvatil
▴ 130
0
votes
0
replies
597
views
retrieve the properties of the reads on NCBI on the command line
Assembly
reads
ncbi
4.2 years ago by
Chvatil
▴ 130
0
votes
0
replies
5.9k
views
Comment:
C: HISAT2- (ERR): hisat2-align exited with value 134
4.2 years ago by
Chvatil
▴ 130
0
votes
1
reply
5.9k
views
Comment:
C: HISAT2- (ERR): hisat2-align exited with value 134
4.2 years ago by
Chvatil
▴ 130
0
votes
0
replies
5.9k
views
Comment:
C: HISAT2- (ERR): hisat2-align exited with value 134
4.2 years ago by
Chvatil
▴ 130
0
votes
0
replies
610
views
detect and correct misassemblies in eucaryotic scaffolds
reapr
mec
Assembly
4.2 years ago by
Chvatil
▴ 130
2
votes
5
replies
5.9k
views
HISAT2- (ERR): hisat2-align exited with value 134
hisat
mapping
updated 4.2 years ago by
MatthewP
★ 1.4k • written 4.2 years ago by
Chvatil
▴ 130
2
votes
3
replies
6.0k
views
Size of the nr database fasta file?
nr
ncbi
database
updated 4.4 years ago by
brian.fristensky
▴ 460 • written 4.4 years ago by
Chvatil
▴ 130
0
votes
0
replies
6.0k
views
Comment:
C: Size of the nr database fasta file?
4.4 years ago by
Chvatil
▴ 130
3
votes
2
replies
964
views
Eucaryotic gene predictor within eucaryote genome
gene
updated 4.4 years ago by
Juke34
8.9k • written 4.4 years ago by
Chvatil
▴ 130
0
votes
0
replies
1.2k
views
disable the SRA cache in HISAT2
hisat
rnaseq
mapping
4.5 years ago by
Chvatil
▴ 130
0
votes
0
replies
906
views
Comment:
C: Test if a list of genes with coordinates are expressed (hisat2 data)
4.5 years ago by
Chvatil
▴ 130
0
votes
3
replies
906
views
Test if a list of genes with coordinates are expressed (hisat2 data)
RNA-Seq
transcription
updated 4.5 years ago by
khorms
▴ 230 • written 4.5 years ago by
Chvatil
▴ 130
0
votes
0
replies
1.8k
views
Comment:
C: Using Bowtie and SRA mode
4.5 years ago by
Chvatil
▴ 130
0
votes
1
reply
1.8k
views
Comment:
C: Using Bowtie and SRA mode
4.5 years ago by
Chvatil
▴ 130
0
votes
1
reply
1.8k
views
Comment:
C: Using Bowtie and SRA mode
4.5 years ago by
Chvatil
▴ 130
0
votes
6
replies
1.8k
views
Using Bowtie and SRA mode
bowtie
mapping
4.5 years ago by
Chvatil
▴ 130
0
votes
0
replies
1.5k
views
Comment:
C: Create my own universel GO db from QuickGO in R
4.6 years ago by
Chvatil
▴ 130
0
votes
2
replies
1.5k
views
Create my own universel GO db from QuickGO in R
GO
ontology
R
4.6 years ago by
Chvatil
▴ 130
0
votes
1
reply
833
views
Plot loci on scaffold (graphic visualization in command line)
sequence
genome
scaffold
updated 4.7 years ago by
Ram
44k • written 4.7 years ago by
Chvatil
▴ 130
0
votes
0
replies
731
views
Comment:
A: Find informations about virus families and their genomic structure
4.7 years ago by
Chvatil
▴ 130
0
votes
1
reply
731
views
Find informations about virus families and their genomic structure
ncbi
4.7 years ago by
Chvatil
▴ 130
0
votes
0
replies
937
views
Comment:
C: Get sequencing informations from NCBI with acc number
4.7 years ago by
Chvatil
▴ 130
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