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8
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4
replies
2.3k
views
Plot genes along scaffolds and sort scaffolds according to their length
R plot genes scaffold
updated 20 months ago by ▴ 90 • written 5.1 years ago by ▴ 140
2
votes
1
reply
734
views
How do you add an ORF that overlaps the two regions where a circular genome is cut in Genbank?
genbank
2.3 years ago by Chvatil ▴ 140
2
votes
0
replies
734
views
Answer: Answer: How do you add an ORF that overlaps the two regions where a circular genome is c
2.3 years ago by Chvatil ▴ 140
2
votes
1
reply
974
views
Looking for Synteny blocks database in arthopods
database synteny
updated 3.8 years ago by ★ 4.3k • written 3.8 years ago by ▴ 140
0
votes
0
replies
3.4k
views
Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
4.2 years ago by Chvatil ▴ 140
0
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0
replies
3.4k
views
Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
4.2 years ago by Chvatil ▴ 140
0
votes
0
replies
3.4k
views
Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
4.2 years ago by Chvatil ▴ 140
0
votes
1
reply
3.4k
views
Comment: Comment: Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
4.2 years ago by Chvatil ▴ 140
4
votes
7
replies
3.4k
views
Download all Becteria and protist fasta protein sequences from UNIPROT proteomes
uniprot fetch fasta proteome bash
4.2 years ago by Chvatil ▴ 140
0
votes
0
replies
596
views
Gene ontology analysis on viral proteins
gene go ontology
4.3 years ago by Chvatil ▴ 140
0
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1
reply
2.9k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
4.4 years ago by Chvatil ▴ 140
0
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0
replies
2.9k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
4.4 years ago by Chvatil ▴ 140
0
votes
2
replies
2.9k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
4.4 years ago by Chvatil ▴ 140
0
votes
1
reply
2.9k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
4.4 years ago by Chvatil ▴ 140
0
votes
1
reply
2.9k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
4.4 years ago by Chvatil ▴ 140
0
votes
0
replies
2.9k
views
Comment: Comment: Using snakemake in order to download reads and run hisat2 mapping
4.4 years ago by Chvatil ▴ 140
2
votes
11
replies
2.9k
views
Using snakemake in order to download reads and run hisat2 mapping
hisat2 snakemake python
updated 4.4 years ago by 23k • written 4.4 years ago by ▴ 140
0
votes
1
reply
1.2k
views
Add features on newick tree (then by creating a NHX format)
newick nhx phylogeny python r
4.6 years ago by Chvatil ▴ 140
7
votes
1
reply
1.7k
views
Calculate tetranucleotide frequency deviation on python
biopython python TNFs
updated 4.7 years ago by ★ 30k • written 4.7 years ago by ▴ 140
0
votes
1
reply
876
views
Find repeat regions on 100 eukaryotic assemblies
repeat Assembly
updated 4.8 years ago by 7.9k • written 4.8 years ago by ▴ 140
0
votes
1
reply
2.0k
views
Comment: C: Question about codeml
4.8 years ago by Chvatil ▴ 140
0
votes
4
replies
2.0k
views
Question about codeml
codeml paml phylogeny tree ds
updated 3.8 years ago by ▴ 190 • written 4.8 years ago by ▴ 140
0
votes
0
replies
1.4k
views
Runmode = -2 in Biopython PAML impossible ?
paml codeml biopython python3
4.8 years ago by Chvatil ▴ 140
0
votes
0
replies
951
views
Programme to calculate dN/dS between pair of sequences in a seq alignment
gene dn/ds codeml paml sequence
4.8 years ago by Chvatil ▴ 140
3
votes
1
reply
1.2k
views
Extract specific variant genome ID from a VCF file
variant genome vcf
updated 4.9 years ago by 14k • written 4.9 years ago by ▴ 140
0
votes
0
replies
3.2k
views
Comment: C: Difference between mate-pair, paired-end and long read
4.9 years ago by Chvatil ▴ 140
0
votes
1
reply
3.2k
views
Comment: C: Difference between mate-pair, paired-end and long read
4.9 years ago by Chvatil ▴ 140
4
votes
5
replies
3.2k
views
Difference between mate-pair, paired-end and long read
assembly read
4.9 years ago by Chvatil ▴ 140
0
votes
0
replies
717
views
retrieve the properties of the reads on NCBI on the command line
Assembly reads ncbi
4.9 years ago by Chvatil ▴ 140
0
votes
0
replies
6.9k
views
Comment: C: HISAT2- (ERR): hisat2-align exited with value 134
5.0 years ago by Chvatil ▴ 140
0
votes
1
reply
6.9k
views
Comment: C: HISAT2- (ERR): hisat2-align exited with value 134
5.0 years ago by Chvatil ▴ 140
0
votes
0
replies
6.9k
views
Comment: C: HISAT2- (ERR): hisat2-align exited with value 134
5.0 years ago by Chvatil ▴ 140
0
votes
0
replies
728
views
detect and correct misassemblies in eucaryotic scaffolds
reapr mec Assembly
5.0 years ago by Chvatil ▴ 140
2
votes
5
replies
6.9k
views
HISAT2- (ERR): hisat2-align exited with value 134
hisat mapping
updated 5.0 years ago by ★ 1.4k • written 5.0 years ago by ▴ 140
2
votes
3
replies
7.8k
views
Size of the nr database fasta file?
nr ncbi database
updated 5.2 years ago by ▴ 460 • written 5.2 years ago by ▴ 140
0
votes
0
replies
7.8k
views
Comment: C: Size of the nr database fasta file?
5.2 years ago by Chvatil ▴ 140
3
votes
2
replies
1.3k
views
Eucaryotic gene predictor within eucaryote genome
gene
updated 5.2 years ago by 9.3k • written 5.2 years ago by ▴ 140
0
votes
0
replies
1.3k
views
disable the SRA cache in HISAT2
hisat rnaseq mapping
5.2 years ago by Chvatil ▴ 140
0
votes
0
replies
1.2k
views
Comment: C: Test if a list of genes with coordinates are expressed (hisat2 data)
5.2 years ago by Chvatil ▴ 140
0
votes
3
replies
1.2k
views
Test if a list of genes with coordinates are expressed (hisat2 data)
RNA-Seq transcription
updated 5.2 years ago by ▴ 230 • written 5.2 years ago by ▴ 140
0
votes
0
replies
2.2k
views
Comment: C: Using Bowtie and SRA mode
5.3 years ago by Chvatil ▴ 140
0
votes
1
reply
2.2k
views
Comment: C: Using Bowtie and SRA mode
5.3 years ago by Chvatil ▴ 140
0
votes
1
reply
2.2k
views
Comment: C: Using Bowtie and SRA mode
5.3 years ago by Chvatil ▴ 140
0
votes
6
replies
2.2k
views
Using Bowtie and SRA mode
bowtie mapping
5.3 years ago by Chvatil ▴ 140
0
votes
0
replies
1.7k
views
Comment: C: Create my own universel GO db from QuickGO in R
5.4 years ago by Chvatil ▴ 140
0
votes
2
replies
1.7k
views
Create my own universel GO db from QuickGO in R
GO ontology R
5.4 years ago by Chvatil ▴ 140
0
votes
1
reply
987
views
Plot loci on scaffold (graphic visualization in command line)
sequence genome scaffold
updated 5.5 years ago by 45k • written 5.5 years ago by ▴ 140
0
votes
1
reply
883
views
Find informations about virus families and their genomic structure
ncbi
5.5 years ago by Chvatil ▴ 140
0
votes
0
replies
883
views
Comment: A: Find informations about virus families and their genomic structure
5.5 years ago by Chvatil ▴ 140
0
votes
0
replies
1.2k
views
Comment: C: Get sequencing informations from NCBI with acc number
5.5 years ago by Chvatil ▴ 140
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