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0
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224
views
Filtering VCF by specific tag in INFO field
view
bcftools
vcf
filter
INFO
updated 18 days ago by
cfos4698
▴ 730 • written 19 days ago by
avelarbio46
▴ 20
1
vote
2
replies
185
views
Converting dbSNP VCF to work with RefSeq chromossome ID
NCBI
dbSNP
RefSeq
updated 24 days ago by
Pierre Lindenbaum
153k • written 24 days ago by
avelarbio46
▴ 20
4
votes
2
replies
602
views
How to create a new gene signature from RNAseq data
gene
RNAseq
signature
updated 8 months ago by
ATpoint
71k • written 8 months ago by
avelarbio46
▴ 20
0
votes
1
reply
335
views
Filtering VCF variants based on txt file with variants CHROM, POS and ID
VCF
updated 11 months ago by
Ram
38k • written 11 months ago by
avelarbio46
▴ 20
0
votes
1
reply
542
views
Running STAR-SEQR with star outputs
STAR-SEQR
STAR
fusion
RNAseq
updated 19 months ago by
GenoMax
127k • written 19 months ago by
avelarbio46
▴ 20
0
votes
1
reply
481
views
GSEA and over-representation analysis of many genes
GSEA
DE
ORA
RNAseq
updated 15 months ago by
bookorg
▴ 10 • written 19 months ago by
avelarbio46
▴ 20
1
vote
1
reply
593
views
How can I compare the similarities of two transcriptomes?
transcriptome
similarity
rnaseq
updated 21 months ago by
Pratik
▴ 880 • written 21 months ago by
avelarbio46
▴ 20
0
votes
0
replies
1.4k
views
Comment:
Comment: Can't count features with featurecount
23 months ago by
avelarbio46
▴ 20
0
votes
1
reply
1.4k
views
Comment:
Comment: Can't count features with featurecount
23 months ago by
avelarbio46
▴ 20
0
votes
1
reply
1.4k
views
Comment:
Comment: Can't count features with featurecount
23 months ago by
avelarbio46
▴ 20
2
votes
6
replies
1.4k
views
Can't count features with featurecount
RNAseq
featurecounts
23 months ago by
avelarbio46
▴ 20
0
votes
0
replies
2.6k
views
Comment:
Comment: Bash loop for bbduk
24 months ago by
avelarbio46
▴ 20
9
votes
11
replies
2.6k
views
Bash loop for bbduk
bash
bbduk
updated 24 months ago by
cpad0112
21k • written 24 months ago by
avelarbio46
▴ 20
0
votes
0
replies
2.6k
views
Answer:
Answer: Bash loop for bbduk
24 months ago by
avelarbio46
▴ 20
0
votes
2
replies
2.6k
views
Comment:
Comment: Bash loop for bbduk
24 months ago by
avelarbio46
▴ 20
0
votes
0
replies
2.6k
views
Comment:
Comment: Bash loop for bbduk
24 months ago by
avelarbio46
▴ 20
0
votes
0
replies
2.6k
views
Comment:
Comment: Bash loop for bbduk
24 months ago by
avelarbio46
▴ 20
0
votes
1
reply
824
views
Comment:
C: Removing batch effects
2.1 years ago by
avelarbio46
▴ 20
0
votes
3
replies
824
views
Removing batch effects
batch-effect
RNA-Seq
updated 2.1 years ago by
swbarnes2
13k • written 2.1 years ago by
avelarbio46
▴ 20
0
votes
0
replies
889
views
Comment:
C: STAR-fusion on galaxy
2.2 years ago by
avelarbio46
▴ 20
0
votes
1
reply
889
views
Comment:
C: STAR-fusion on galaxy
2.2 years ago by
avelarbio46
▴ 20
0
votes
4
replies
889
views
STAR-fusion on galaxy
Galaxy
RNA-Seq
STAR-fusion
2.2 years ago by
avelarbio46
▴ 20
0
votes
1
reply
18k
views
Comment:
C: GO analysis using topGO
2.2 years ago by
avelarbio46
▴ 20
2
votes
1
reply
482
views
Gene size correction for small RNA
small RNA
miRNA
RNA-Seq
normalization
updated 2.2 years ago by
dsull
★ 4.0k • written 2.2 years ago by
avelarbio46
▴ 20
2
votes
2
replies
812
views
How to trim reads when I'm not sure where they are?
RNA-Seq
cutadapt
illumina
updated 2.2 years ago by
shelkmike
▴ 920 • written 2.2 years ago by
avelarbio46
▴ 20
1
vote
1
reply
2.2k
views
Comment:
C: Best ubuntu version for bioinformatics?
2.3 years ago by
avelarbio46
▴ 20
25
votes
13
replies
2.2k
views
6 follow
Best ubuntu version for bioinformatics?
ubuntu
updated 2.3 years ago by
Mensur Dlakic
★ 23k • written 2.3 years ago by
avelarbio46
▴ 20
0
votes
1
reply
1.1k
views
Comment:
C: Small RNAseq Dataset to test scripts
2.3 years ago by
avelarbio46
▴ 20
0
votes
1
reply
1.1k
views
Comment:
C: Small RNAseq Dataset to test scripts
2.3 years ago by
avelarbio46
▴ 20
0
votes
1
reply
1.1k
views
Comment:
C: Small RNAseq Dataset to test scripts
2.3 years ago by
avelarbio46
▴ 20
0
votes
1
reply
1.1k
views
Comment:
C: Small RNAseq Dataset to test scripts
2.3 years ago by
avelarbio46
▴ 20
3
votes
10
replies
1.1k
views
Small RNAseq Dataset to test scripts
RNA-Seq
rna-seq
updated 2.3 years ago by
Qiongyi
▴ 150 • written 2.3 years ago by
avelarbio46
▴ 20
0
votes
0
replies
885
views
Galaxy workflow concatenate
Galaxy
workflow
fastqc
multiqc
2.5 years ago by
avelarbio46
▴ 20
1
vote
1
reply
451
views
RNAseq more sequences than reads after mapping
RNA-Seq
mapping
reads
2.5 years ago by
avelarbio46
▴ 20
0
votes
6
replies
771
views
List of genes with common false-positives
NGS
False-positive
updated 3.3 years ago by
Biostar
20 • written 3.5 years ago by
avelarbio46
▴ 20
0
votes
1
reply
4.5k
views
Comment:
C: open-cravat: variant annotation tool
3.5 years ago by
avelarbio46
▴ 20
0
votes
2
replies
771
views
Comment:
C: List of genes with common false-positives
3.5 years ago by
avelarbio46
▴ 20
0
votes
1
reply
771
views
Comment:
C: List of genes with common false-positives
3.5 years ago by
avelarbio46
▴ 20
0
votes
0
replies
1.4k
views
Comment:
C: Pooling samples for RNA
3.9 years ago by
avelarbio46
▴ 20
2
votes
2
replies
1.4k
views
Pooling samples for RNA
RNA-Seq
Cancer
Illumina
Pool
3.9 years ago by
avelarbio46
▴ 20
0
votes
0
replies
28k
views
Comment:
A: How to create a mutation landscape (waterfall) plot with GenVisR
4.6 years ago by
avelarbio46
▴ 20
0
votes
0
replies
28k
views
Comment:
A: How to create a mutation landscape (waterfall) plot with GenVisR
4.6 years ago by
avelarbio46
▴ 20
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