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33
votes
30
replies
31k
views
9 follow
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bam bed ucsc genome-browser
updated 19 months ago by ★ 1.5k • written 10.3 years ago by ▴ 930
2
votes
5
replies
4.8k
views
Adding Introns To Gff3 Format?
coordinates gff3 conversion
updated 22 months ago by 39k • written 10.3 years ago by ▴ 930
2
votes
8
replies
6.1k
views
Strandedness Of Homer For Motif Analysis
motif motif sequence
updated 5.3 years ago by 20 • written 10.2 years ago by ▴ 930
8
votes
2
replies
3.6k
views
Finding Gff File For All Uniprot Protein Isoform Domain Annotations
protein
updated 15 months ago by 39k • written 10.7 years ago by ▴ 930
10
votes
6
replies
9.3k
views
Gene set enrichment tool for RNA-Seq in Python?
gsea gene-ontology go RNA-Seq python
updated 7.0 years ago by ▴ 370 • written 9.0 years ago by ▴ 930
11
votes
2
replies
7.6k
views
How To Find Sample Information From Srr Labels In Geo?
geo illumina sra next-gen-sequencing
updated 3 months ago by 39k • written 9.8 years ago by ▴ 930
4
votes
4
replies
6.8k
views
Trouble Compiling C++ Code With Bamtools
samtools rna-seq
updated 7.5 years ago by • 0 • written 9.3 years ago by ▴ 930
1
vote
5
replies
4.7k
views
Tophat Error: Bam2Fastx Failed To Open Bam
tophat rna-seq bowtie mapping
updated 7.5 years ago by 20 • written 10.7 years ago by ▴ 930
25
votes
20
replies
16k
views
12 follow
Mapping Uniprot To Ensembl Genes
uniprot ensembl proteomics
updated 7 months ago by ▴ 280 • written 10.9 years ago by ▴ 930
4
votes
9
replies
10k
views
Adding Custom Bed And Bam Tracks To UCSC Browser By URL
ucsc genome browser bam bed
updated 8.4 years ago by • 0 • written 10.3 years ago by ▴ 930
0
votes
1
reply
2.1k
views
Comment: Comment: interpreting minus strand reads in BAM?
updated 15 months ago by 39k • written 8.5 years ago by ▴ 930
0
votes
1
reply
2.1k
views
Comment: Comment: interpreting minus strand reads in BAM?
updated 15 months ago by 39k • written 8.5 years ago by ▴ 930
0
votes
5
replies
2.1k
views
interpreting minus strand reads in BAM?
next-gen alignment samtools bam RNA-Seq
updated 15 months ago by 39k • written 8.5 years ago by ▴ 930
9
votes
2
replies
3.7k
views
Telling Heterozygous Mutations From Tcga Maf Format?
tcga maf mutation genomics sequencing
updated 8.7 years ago by 20 • written 9.8 years ago by ▴ 930
0
votes
1
reply
9.3k
views
Comment: C: Gene set enrichment tool for RNA-Seq in Python?
9.0 years ago by user ▴ 930
21
votes
5
replies
13k
views
linking ensembl gene ID to GO term?
ucsc gene-ontology go gene-ids ensembl
updated 9.0 years ago by 11k • written 9.0 years ago by ▴ 930
6
votes
2
replies
9.0k
views
Obtaining Ucsc Tables Via Ftp And Converting Them To Proper Gff3 Via Genepredtogtf?
ucsc genes
updated 3 months ago by 39k • written 10.6 years ago by ▴ 930
3
votes
1
reply
2.1k
views
No PhyloP score for first stretch of chromosome?
alignment ucsc genome-browser phylop
updated 20 months ago by 39k • written 9.1 years ago by ▴ 930
0
votes
1
reply
2.1k
views
limit size of alignment generated by clustalw? Or related aligners?
alignment fasta phylogenomics comparative-genomics
9.1 years ago by user ▴ 930
7
votes
2
replies
6.4k
views
Detailed Explanation Of Ucsc Orientation / Coordinate Conversion For Minus Stranded Sequences?
strand dna alignment genome-browser
updated 9.2 years ago by 20 • written 9.4 years ago by ▴ 930
1
vote
1
reply
2.6k
views
Gene Expression Signatures For Basal Vs Mesenchymal Breast Tumors?
gene-expression clustering classification cancer genomics
updated 9.2 years ago by ★ 1.5k • written 9.2 years ago by ▴ 930
0
votes
1
reply
6.8k
views
Comment: C: Trouble Compiling C++ Code With Bamtools
9.3 years ago by user ▴ 930
50
votes
14
replies
28k
views
8 follow
Where To Download Pam50 Gene Set?
cancer annotation classification
updated 3 months ago by 39k • written 9.8 years ago by ▴ 930
0
votes
1
reply
3.6k
views
Comprehensive Annotation Of Luminal/Basal For Breast Cancer Cell Line Microarray
microarray cancer genomics clustering
updated 9.3 years ago by 8.2k • written 9.3 years ago by ▴ 930
17
votes
6
replies
7.3k
views
Parameters That Determine Meme Speed And Homer Speed For Motif Discovery?
meme motif motif sequence
updated 9.3 years ago by 20 • written 10.2 years ago by ▴ 930
1
vote
2
replies
2.0k
views
Ucsc Track Friendly Format For Cds Sequences And Coordinates?
genome-browser fasta
updated 9.4 years ago by 103k • written 9.4 years ago by ▴ 930
0
votes
0
replies
6.4k
views
Comment: C: Detailed Explanation Of Ucsc Orientation / Coordinate Conversion For Minus Stran
9.4 years ago by user ▴ 930
6
votes
5
replies
3.1k
views
What Version Of Ensembl Is Ucsc Genome Browser Using?
ucsc genome-browser annotation ensembl
updated 9.5 years ago by 20 • written 9.9 years ago by ▴ 930
0
votes
0
replies
8.2k
views
Comment: C: How To Find Rna-Seq Data Of Published Papers?
9.8 years ago by user ▴ 930
18
votes
4
replies
8.2k
views
How To Find Rna-Seq Data Of Published Papers?
geo next-gen RNA-seq
updated 3 months ago by 39k • written 9.8 years ago by ▴ 930
0
votes
1
reply
14k
views
Comment: C: Differences Between Eisen Hierarchical Clustering In Bioconductor/R Versus Heatm
9.8 years ago by user ▴ 930
9
votes
3
replies
14k
views
Differences Between Eisen Hierarchical Clustering In Bioconductor/R Versus Heatmap.2?
clustering r bioconductor gene-expression
updated 3 months ago by 39k • written 9.8 years ago by ▴ 930
0
votes
1
reply
28k
views
Comment: C: Where To Download Pam50 Gene Set?
9.8 years ago by user ▴ 930
0
votes
1
reply
28k
views
Comment: C: Where To Download Pam50 Gene Set?
9.8 years ago by user ▴ 930
0
votes
0
replies
28k
views
Comment: C: Where To Download Pam50 Gene Set?
9.8 years ago by user ▴ 930
10
votes
2
replies
8.0k
views
How To Register A Tool With Galaxy?
galaxy pipeline
updated 3 months ago by 39k • written 9.9 years ago by ▴ 930
1
vote
1
reply
3.1k
views
Comment: C: What Version Of Ensembl Is Ucsc Genome Browser Using?
9.9 years ago by user ▴ 930
2
votes
3
replies
2.4k
views
Getting Ucsc Headers For Tables Through Ftp Or Via Sql?
ucsc genome-browser annotation genes
9.9 years ago by user ▴ 930
0
votes
1
reply
2.4k
views
Comment: C: Getting Ucsc Headers For Tables Through Ftp Or Via Sql?
9.9 years ago by user ▴ 930
1
vote
0
replies
3.6k
views
Computing Dinucleotide Frequencies / Markov Models And Scoring Sequences In Python?
hmm sequence motif python biopython
10.0 years ago by user ▴ 930
2
votes
4
replies
8.1k
views
Orientation Of Sequence On Minus Strand In Ucsc Genome Browser
ucsc genome-browser sequence strand strand
updated 10.0 years ago by ★ 1.9k • written 10.0 years ago by ▴ 930
0
votes
1
reply
8.1k
views
Comment: C: Orientation Of Sequence On Minus Strand In Ucsc Genome Browser
10.0 years ago by user ▴ 930
0
votes
0
replies
2.3k
views
Converting Multiple Global Alignment From Clustalw To Pwm?
alignment multiple-alignment sequence motif
10.1 years ago by user ▴ 930
0
votes
0
replies
4.6k
views
Comment: C: Sequence Logos With Weblogo Scale
10.1 years ago by user ▴ 930
9
votes
7
replies
4.6k
views
Sequence Logos With Weblogo Scale
sequence alignment motif motif
updated 10.1 years ago by 35k • written 10.1 years ago by ▴ 930
0
votes
0
replies
4.6k
views
Comment: C: Sequence Logos With Weblogo Scale
10.1 years ago by user ▴ 930
0
votes
1
reply
4.6k
views
Comment: C: Sequence Logos With Weblogo Scale
10.1 years ago by user ▴ 930
1
vote
2
replies
4.3k
views
Removing Pcr Duplicates From Bam Without Collapsing Sequences By Position?
bam samtools next-gen rna-seq pcr alignment
updated 10.2 years ago by ★ 5.2k • written 10.2 years ago by ▴ 930
0
votes
1
reply
13k
views
Comment: C: Plotting Read Densities And Gene Tracks In R?
10.2 years ago by user ▴ 930
10
votes
5
replies
13k
views
Plotting Read Densities And Gene Tracks In R?
gff genes rna-seq next-gen bam visualization r
updated 10.2 years ago by 26k • written 10.2 years ago by ▴ 930
92 results • Page 1 of 2
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