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Comment: C: Is it still recommended to avoid macOS Big Sur?
3.3 years ago by jrleary ▴ 210
7
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3
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Forum: Is it still recommended to avoid macOS Big Sur?
mac
updated 11 months ago by 43k • written 3.3 years ago by ▴ 210
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6
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Estimating hetero/homogeneity of scRNAseq clusters
scRNA-seq R
updated 3.7 years ago by 20 • written 3.8 years ago by ▴ 210
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Comment: C: Estimating hetero/homogeneity of scRNAseq clusters
3.8 years ago by jrleary ▴ 210
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1.0k
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Comment: C: Estimating hetero/homogeneity of scRNAseq clusters
3.8 years ago by jrleary ▴ 210
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2
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3.2k
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What are the differences between the Seurat v3 clustering algorithms?
scRNA-seq Seurat R
3.8 years ago by jrleary ▴ 210
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2.3k
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Comment: C: Cell type pathway ScRNAseq
3.8 years ago by jrleary ▴ 210
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1.2k
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Comment: C: How to get same reproducible value in R?
3.8 years ago by jrleary ▴ 210
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1.8k
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Comment: C: Using R Studio on Cloud
3.8 years ago by jrleary ▴ 210
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1
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1.2k
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Answer: A: How to get same reproducible value in R?
3.8 years ago by jrleary ▴ 210
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5.9k
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Comment: C: Can I manually add nCount_RNA & nFeature_RNA to a converted Seurat object?
3.8 years ago by jrleary ▴ 210
5
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1
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5.9k
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Can I manually add nCount_RNA & nFeature_RNA to a converted Seurat object?
scRNA-seq Seurat R
3.8 years ago by jrleary ▴ 210
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0
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1.9k
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Comment: C: How should I extract mutated genes from a VCF file?
3.9 years ago by jrleary ▴ 210
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1.9k
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Comment: C: How should I extract mutated genes from a VCF file?
3.9 years ago by jrleary ▴ 210
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4
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1.9k
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How should I extract mutated genes from a VCF file?
WES exome gatk
3.9 years ago by jrleary ▴ 210
2
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3
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3.0k
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How much RAM / how many CPUs should I allocate for Mutect2?
WES
updated 3.9 years ago by ★ 3.5k • written 3.9 years ago by ▴ 210
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3.0k
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Comment: C: How much RAM / how many CPUs should I allocate for Mutect2?
3.9 years ago by jrleary ▴ 210
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0
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1.9k
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Comment: C: Picard CollectSequencingArtifactMetrics error
3.9 years ago by jrleary ▴ 210
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1
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1.9k
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Comment: C: Picard CollectSequencingArtifactMetrics error
3.9 years ago by jrleary ▴ 210
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2
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1.9k
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Comment: C: Picard CollectSequencingArtifactMetrics error
3.9 years ago by jrleary ▴ 210
0
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1
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1.9k
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Comment: C: Picard CollectSequencingArtifactMetrics error
3.9 years ago by jrleary ▴ 210
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1.9k
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Comment: C: Picard CollectSequencingArtifactMetrics error
3.9 years ago by jrleary ▴ 210
2
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11
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1.9k
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Picard CollectSequencingArtifactMetrics error
picard WES
3.9 years ago by jrleary ▴ 210
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0
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1.6k
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Comment: C: Coloring single cell dimension-reduced plots in R, which palettes can handle hig
3.9 years ago by jrleary ▴ 210
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2
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1.6k
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Coloring single cell dimension-reduced plots in R, which palettes can handle high n?
R ggplot2
3.9 years ago by jrleary ▴ 210
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0
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720
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Comment: C: Where to find reference transcriptome for firefly?
4.0 years ago by jrleary ▴ 210
1
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2
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720
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Where to find reference transcriptome for firefly?
scRNA-seq cellranger alignment transcriptome
updated 4.0 years ago by 141k • written 4.0 years ago by ▴ 210
3
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3
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1.3k
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Salmon only processes human reads from PDX data
salmon RNA-Seq alignment software error
updated 4.0 years ago by ▴ 50 • written 4.2 years ago by ▴ 210
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0
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1.9k
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Comment: C: Papers on Paired Single Cell and Bulk RNAseq
4.1 years ago by jrleary ▴ 210
2
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3
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1.9k
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Papers on Paired Single Cell and Bulk RNAseq
RNA-Seq scRNA-seq
updated 4.1 years ago by ▴ 10 • written 4.1 years ago by ▴ 210
2
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3.3k
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Comment: C: Identifying tumor cells in single cell RNAseq data
4.1 years ago by jrleary ▴ 210
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1
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3.3k
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Comment: C: Identifying tumor cells in single cell RNAseq data
4.2 years ago by jrleary ▴ 210
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1
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3.3k
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Comment: C: Identifying tumor cells in single cell RNAseq data
4.2 years ago by jrleary ▴ 210
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3.3k
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Comment: C: Identifying tumor cells in single cell RNAseq data
4.2 years ago by jrleary ▴ 210
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2
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3.3k
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Comment: C: Identifying tumor cells in single cell RNAseq data
4.2 years ago by jrleary ▴ 210
2
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5.1k
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Answer: A: Marker genes for different cell types
4.2 years ago by jrleary ▴ 210
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1
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3.3k
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Comment: C: Identifying tumor cells in single cell RNAseq data
4.2 years ago by jrleary ▴ 210
12
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14
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3.3k
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Identifying tumor cells in single cell RNAseq data
cancer scRNAseq R
updated 4.2 years ago by ★ 16k • written 4.2 years ago by ▴ 210
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0
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2.3k
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Comment: C: Recommendations for Whole Genome Sequencing Workflow
4.2 years ago by jrleary ▴ 210
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1
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2.3k
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Comment: C: Recommendations for Whole Genome Sequencing Workflow
4.2 years ago by jrleary ▴ 210
11
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9
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2.3k
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Recommendations for Whole Genome Sequencing Workflow
WGS genome Assembly
updated 4.2 years ago by ▴ 960 • written 4.2 years ago by ▴ 210
3
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2
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2.7k
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Any recommendations for copy number variation (CNV) packages for scRNA-seq?
single cell scRNAseq CNV R
updated 4.2 years ago by ★ 16k • written 4.2 years ago by ▴ 210
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1.3k
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Comment: C: Salmon only processes human reads from PDX data
4.2 years ago by jrleary ▴ 210
0
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1
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755
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Should cells be rows or columns when dimension reducing scRNAseq data?
scRNAseq single cell analysis
4.3 years ago by jrleary ▴ 210
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1
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3.4k
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Comment: C: Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
4.3 years ago by jrleary ▴ 210
0
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1
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3.4k
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Comment: C: Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
4.3 years ago by jrleary ▴ 210
3
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9
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3.4k
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Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
sc-rnaseq differential expression
updated 4.3 years ago by 13k • written 4.3 years ago by ▴ 210
0
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1
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3.4k
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Comment: C: Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
4.3 years ago by jrleary ▴ 210
0
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0
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7.0k
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Comment: C: Should I Run Clustering on PCA or t-SNE Components?
4.4 years ago by jrleary ▴ 210
9
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8
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7.0k
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Should I Run Clustering on PCA or t-SNE Components?
sc-rnaseq clustering
updated 4.4 years ago by ★ 27k • written 4.4 years ago by ▴ 210
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