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Comment: C: Is it still recommended to avoid macOS Big Sur?
2.5 years ago by jrleary ▴ 190
7
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3
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1.1k
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Forum: Is it still recommended to avoid macOS Big Sur?
mac
updated 20 days ago by 39k • written 2.5 years ago by ▴ 190
0
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6
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810
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Estimating hetero/homogeneity of scRNAseq clusters
scRNA-seq R
updated 2.8 years ago by 20 • written 3.0 years ago by ▴ 190
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1
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810
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Comment: C: Estimating hetero/homogeneity of scRNAseq clusters
3.0 years ago by jrleary ▴ 190
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1
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810
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Comment: C: Estimating hetero/homogeneity of scRNAseq clusters
3.0 years ago by jrleary ▴ 190
3
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2
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2.3k
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What are the differences between the Seurat v3 clustering algorithms?
scRNA-seq Seurat R
3.0 years ago by jrleary ▴ 190
1
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0
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1.9k
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Comment: C: Cell type pathway ScRNAseq
3.0 years ago by jrleary ▴ 190
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1
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927
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Comment: C: How to get same reproducible value in R?
3.0 years ago by jrleary ▴ 190
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0
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1.5k
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Comment: C: Using R Studio on Cloud
3.0 years ago by jrleary ▴ 190
0
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1
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927
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Answer: A: How to get same reproducible value in R?
3.0 years ago by jrleary ▴ 190
3
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4.3k
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Comment: C: Can I manually add nCount_RNA & nFeature_RNA to a converted Seurat object?
3.0 years ago by jrleary ▴ 190
3
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1
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4.3k
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Can I manually add nCount_RNA & nFeature_RNA to a converted Seurat object?
scRNA-seq Seurat R
3.0 years ago by jrleary ▴ 190
0
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0
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1.5k
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Comment: C: How should I extract mutated genes from a VCF file?
3.0 years ago by jrleary ▴ 190
0
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0
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1.5k
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Comment: C: How should I extract mutated genes from a VCF file?
3.0 years ago by jrleary ▴ 190
0
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4
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1.5k
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How should I extract mutated genes from a VCF file?
WES exome gatk
3.0 years ago by jrleary ▴ 190
2
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3
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2.4k
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How much RAM / how many CPUs should I allocate for Mutect2?
WES
updated 3.0 years ago by ★ 3.3k • written 3.0 years ago by ▴ 190
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0
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2.4k
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Comment: C: How much RAM / how many CPUs should I allocate for Mutect2?
3.0 years ago by jrleary ▴ 190
0
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0
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1.5k
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Comment: C: Picard CollectSequencingArtifactMetrics error
3.0 years ago by jrleary ▴ 190
0
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1
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1.5k
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Comment: C: Picard CollectSequencingArtifactMetrics error
3.0 years ago by jrleary ▴ 190
0
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2
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1.5k
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Comment: C: Picard CollectSequencingArtifactMetrics error
3.0 years ago by jrleary ▴ 190
0
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1
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1.5k
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Comment: C: Picard CollectSequencingArtifactMetrics error
3.0 years ago by jrleary ▴ 190
0
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0
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1.5k
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Comment: C: Picard CollectSequencingArtifactMetrics error
3.0 years ago by jrleary ▴ 190
2
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11
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1.5k
views
Picard CollectSequencingArtifactMetrics error
picard WES
3.0 years ago by jrleary ▴ 190
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0
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1.2k
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Comment: C: Coloring single cell dimension-reduced plots in R, which palettes can handle hig
3.1 years ago by jrleary ▴ 190
3
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2
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1.2k
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Coloring single cell dimension-reduced plots in R, which palettes can handle high n?
R ggplot2
3.1 years ago by jrleary ▴ 190
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0
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594
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Comment: C: Where to find reference transcriptome for firefly?
3.1 years ago by jrleary ▴ 190
1
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2
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594
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Where to find reference transcriptome for firefly?
scRNA-seq cellranger alignment transcriptome
updated 3.1 years ago by 130k • written 3.1 years ago by ▴ 190
3
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3
replies
995
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Salmon only processes human reads from PDX data
salmon RNA-Seq alignment software error
updated 3.1 years ago by ▴ 50 • written 3.4 years ago by ▴ 190
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0
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1.6k
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Comment: C: Papers on Paired Single Cell and Bulk RNAseq
3.2 years ago by jrleary ▴ 190
2
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3
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1.6k
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Papers on Paired Single Cell and Bulk RNAseq
RNA-Seq scRNA-seq
updated 3.2 years ago by ▴ 10 • written 3.2 years ago by ▴ 190
2
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0
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2.6k
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Comment: C: Identifying tumor cells in single cell RNAseq data
3.3 years ago by jrleary ▴ 190
0
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1
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2.6k
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Comment: C: Identifying tumor cells in single cell RNAseq data
3.3 years ago by jrleary ▴ 190
0
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1
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2.6k
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Comment: C: Identifying tumor cells in single cell RNAseq data
3.3 years ago by jrleary ▴ 190
0
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0
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2.6k
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Comment: C: Identifying tumor cells in single cell RNAseq data
3.3 years ago by jrleary ▴ 190
0
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2
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2.6k
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Comment: C: Identifying tumor cells in single cell RNAseq data
3.3 years ago by jrleary ▴ 190
2
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0
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4.7k
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Answer: A: Marker genes for different cell types
3.3 years ago by jrleary ▴ 190
0
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1
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2.6k
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Comment: C: Identifying tumor cells in single cell RNAseq data
3.3 years ago by jrleary ▴ 190
12
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14
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2.6k
views
Identifying tumor cells in single cell RNAseq data
cancer scRNAseq R
updated 3.3 years ago by ★ 14k • written 3.3 years ago by ▴ 190
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0
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1.9k
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Comment: C: Recommendations for Whole Genome Sequencing Workflow
3.3 years ago by jrleary ▴ 190
0
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1
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1.9k
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Comment: C: Recommendations for Whole Genome Sequencing Workflow
3.3 years ago by jrleary ▴ 190
11
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9
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1.9k
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Recommendations for Whole Genome Sequencing Workflow
WGS genome Assembly
updated 3.3 years ago by ▴ 940 • written 3.3 years ago by ▴ 190
3
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2
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2.4k
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Any recommendations for copy number variation (CNV) packages for scRNA-seq?
single cell scRNAseq CNV R
updated 3.3 years ago by ★ 14k • written 3.3 years ago by ▴ 190
1
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0
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995
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Comment: C: Salmon only processes human reads from PDX data
3.4 years ago by jrleary ▴ 190
0
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1
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659
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Should cells be rows or columns when dimension reducing scRNAseq data?
scRNAseq single cell analysis
3.4 years ago by jrleary ▴ 190
0
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1
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2.7k
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Comment: C: Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
3.5 years ago by jrleary ▴ 190
0
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1
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2.7k
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Comment: C: Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
3.5 years ago by jrleary ▴ 190
3
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9
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2.7k
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Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
sc-rnaseq differential expression
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 190
0
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1
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2.7k
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Comment: C: Is it appropriate to use counts = counts + 1 when using DESeq2 on scRNAseq data?
3.5 years ago by jrleary ▴ 190
0
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0
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5.8k
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Comment: C: Should I Run Clustering on PCA or t-SNE Components?
3.5 years ago by jrleary ▴ 190
9
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8
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5.8k
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Should I Run Clustering on PCA or t-SNE Components?
sc-rnaseq clustering
updated 3.5 years ago by ★ 23k • written 3.5 years ago by ▴ 190
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