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1
vote
1
reply
902
views
Process Truncated fastq file
fastqc fastq
updated 19 months ago by 152k • written 19 months ago by ▴ 160
1
vote
3
replies
936
views
Zero Mapping rate
bowtie mapping
updated 23 months ago by ★ 1.9k • written 23 months ago by ▴ 160
3
votes
1
reply
977
views
Fastqc lsequence duplication and per base sequence content failed
RNA-seq fastqc
updated 2.3 years ago by 152k • written 2.3 years ago by ▴ 160
0
votes
1
reply
948
views
Genes near SNP within certain window frame and distance
bedops bedtools
updated 2.3 years ago by 45k • written 2.3 years ago by ▴ 160
0
votes
1
reply
821
views
Compare population structure results
plots circlize dendextend R
updated 2.5 years ago by ▴ 120 • written 2.5 years ago by ▴ 160
0
votes
1
reply
1.3k
views
Modify color in pie charts on a geographical map
ggplot
2.6 years ago by waqaskhokhar999 ▴ 160
4
votes
4
replies
3.5k
views
strandness of paired-end data
RNA-Seq featureCounts
updated 2.7 years ago by ★ 4.4k • written 6.8 years ago by ▴ 160
3
votes
10
replies
3.0k
views
Run ASTALAVISTA for large number of files
RNA-Seq alternative splicing
updated 2.7 years ago by • 0 • written 5.8 years ago by ▴ 160
0
votes
0
replies
649
views
Number of PCA for GWAS
GWAS PCA
2.8 years ago by waqaskhokhar999 ▴ 160
1
vote
1
reply
913
views
Heatmap of samples without replicates
Heatmap
updated 2.8 years ago by ★ 1.9k • written 2.8 years ago by ▴ 160
1
vote
6
replies
3.7k
views
Convert the genotype format from numeric to letters
SNP vcf
updated 2.9 years ago by • 0 • written 6.2 years ago by ▴ 160
0
votes
0
replies
709
views
Change colors of each histogram in correlation and phenotypic distribution plot
Histogram
2.9 years ago by waqaskhokhar999 ▴ 160
0
votes
2
replies
1.1k
views
Stringtie skips some reference genes
Stringtie Assembly RNA-seq
2.9 years ago by waqaskhokhar999 ▴ 160
0
votes
0
replies
1.6k
views
Minor Allele Frequency (MAF) Filtering differences: Gappet vs Tassel
MAF GWAS
updated 4.0 years ago by 152k • written 4.0 years ago by ▴ 160
0
votes
5
replies
2.5k
views
Plot GWAS p value distribution for multiple traits
GWAS Plotting R
4.8 years ago by waqaskhokhar999 ▴ 160
1
vote
2
replies
1.0k
views
Indentify character and keep corressponding character from bottom two rows
RNA-Seq
updated 5.3 years ago by 13k • written 5.3 years ago by ▴ 160
1
vote
2
replies
962
views
Combine fasta files by matching partial header in specific format
RNA-Seq
5.3 years ago by waqaskhokhar999 ▴ 160
3
votes
4
replies
1.6k
views
Replace ambigious nucleotide with correct nucleotides
next-gen RNA-Seq
updated 5.3 years ago by 45k • written 5.3 years ago by ▴ 160
2
votes
8
replies
2.2k
views
Replace Ambigious codons with Amino acid sequences
RNA-Seq sequence
updated 5.3 years ago by 10k • written 5.3 years ago by ▴ 160
0
votes
1
reply
2.2k
views
Extract longest ORF
RNA-Seq
updated 5.3 years ago by ▴ 1000 • written 5.3 years ago by ▴ 160
2
votes
2
replies
1.4k
views
Alternative of ORFFinder for multiple nucleotide sequences
RNA-Seq ORF translation
updated 5.4 years ago by 152k • written 5.4 years ago by ▴ 160
0
votes
3
replies
1.1k
views
Find gene ids based on genome coordinates
RNA-Seq gene
5.7 years ago by waqaskhokhar999 ▴ 160
11
votes
9
replies
2.5k
views
Remove overlap between Exon and UTR boundaries
RNA-Seq exon UTR
updated 5.8 years ago by 13k • written 5.8 years ago by ▴ 160
1
vote
3
replies
2.0k
views
Splicing QTL plot
sQTL SNP ggplots R
updated 5.8 years ago by 12k • written 5.8 years ago by ▴ 160
0
votes
1
reply
1.2k
views
plot snps on chromosomes
snps plot
5.8 years ago by waqaskhokhar999 ▴ 160
5
votes
2
replies
1.8k
views
Filter transcripts based on CDS length
RNA-Seq annotation
updated 5.8 years ago by ▴ 740 • written 5.8 years ago by ▴ 160
1
vote
5
replies
2.1k
views
Identify transcripts code for longest protein from gene annotation file
RNA-Seq Reference annotation file
updated 5.9 years ago by 13k • written 5.9 years ago by ▴ 160
5
votes
4
replies
2.4k
views
Convert intron coordinates to gene names
RNA-Seq sqtl
updated 5.9 years ago by 36k • written 5.9 years ago by ▴ 160
0
votes
1
reply
1.1k
views
Divide isoform expression by gene expression to calculate splicing ratios
RNA-Seq Assembly
6.0 years ago by waqaskhokhar999 ▴ 160
1
vote
1
reply
2.5k
views
Gene feature information missing in Stringtie merged assembly
RNA-Seq Assembly gtf
updated 6.0 years ago by 9.3k • written 6.0 years ago by ▴ 160
4
votes
3
replies
5.5k
views
Increase height of box plots in ggplot
R ggplot2 boxplot
updated 6.0 years ago by 36k • written 6.0 years ago by ▴ 160
3
votes
7
replies
3.5k
views
Multiple reference alleles in vcf file
SNP
updated 6.0 years ago by ★ 3.0k • written 6.0 years ago by ▴ 160
1
vote
10
replies
1.8k
views
Alignment of single-ended library distributed among different lanes
RNA-Seq alignment
updated 6.1 years ago by 20 • written 6.4 years ago by ▴ 160
0
votes
2
replies
1.3k
views
Plot association between genotype and splicing ratio using ggplot
SNP RNA-Seq ggplot
6.1 years ago by waqaskhokhar999 ▴ 160
6
votes
3
replies
1.6k
views
Numeric genotype to letters
SNP
updated 6.1 years ago by 13k • written 6.1 years ago by ▴ 160
2
votes
3
replies
1.5k
views
Overlap between ranges
RNA-Seq
updated 6.1 years ago by ★ 2.2k • written 6.1 years ago by ▴ 160
0
votes
1
reply
1.9k
views
Memory error during imputation of full genome data for multiple samples
SNP imputation beagle
updated 6.1 years ago by • 0 • written 6.1 years ago by ▴ 160
1
vote
2
replies
1.6k
views
Extract multi exonic genes from gtf files
RNA-Seq gtf exon
6.2 years ago by waqaskhokhar999 ▴ 160
2
votes
6
replies
2.4k
views
Estimate percentage of alternative splicing
RNA-Seq Alternative splicing
updated 6.2 years ago by 8.3k • written 6.2 years ago by ▴ 160
0
votes
4
replies
1.5k
views
Filter vaiants having no AF information
snp minor allele frequency vcf
6.2 years ago by waqaskhokhar999 ▴ 160
2
votes
3
replies
2.9k
views
Stringtie merge assembly with extra transcripts
RNA-Seq Assembly stringtie-merge
updated 6.2 years ago by ▴ 410 • written 6.2 years ago by ▴ 160
4
votes
1
reply
2.9k
views
gffcompare class code 'j'
RNA-Seq gffcompare
updated 6.2 years ago by 152k • written 6.2 years ago by ▴ 160
0
votes
2
replies
2.5k
views
Trinity for single end library distributed among different lanes.
RNA-Seq Assembly
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 160
0
votes
0
replies
2.0k
views
Alternative splicing from stringTie
RNA-Seq
6.7 years ago by waqaskhokhar999 ▴ 160
0
votes
2
replies
2.5k
views
Infer direction of paired end data
RNA-Seq
updated 6.7 years ago by 102k • written 6.7 years ago by ▴ 160
5
votes
1
reply
2.0k
views
Alternative splicing events in transcriptomic data
RNA-Seq
updated 9.3 years ago by 13k • written 9.3 years ago by ▴ 160
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