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19
votes
12
replies
8.7k
views
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How To Learn About Next Generation Gene Sequencing
sequencing
written 12.0 years ago by 9.8k
4
votes
3
replies
3.1k
views
Split VCF file
vcf sequencing
written 8.0 years ago by 9.8k
1
vote
2
replies
4.9k
views
Using PRINSEQ lite with zipped paired-end illumina reads
prinseq next-gen-sequencing quality-reads Illumina
updated 2.8 years ago by • 0 • written 10.4 years ago by 9.8k
1
vote
4
replies
1.9k
views
Select variants that exist in all samples from a merged VCF file using bcftools
SNVs bcftools
3.0 years ago by Medhat 9.8k
2
votes
3
replies
3.2k
views
error while using plant ensembl biomart
software error gene ensembl biomart
updated 3.4 years ago by • 0 • written 7.2 years ago by 9.8k
2
votes
1
reply
1.8k
views
Samtools reheader Numerical result out of range
samtools header bam
3.8 years ago by Medhat 9.8k
2
votes
2
replies
1.1k
views
Why we have exons that start and end at the same coordinate?!
gtf exon GRCh38
updated 3.8 years ago by 47k • written 3.8 years ago by 9.8k
3
votes
2
replies
3.9k
views
Mappability file for hg38
sequence mappabilit
4.0 years ago by Medhat 9.8k
1
vote
2
replies
3.9k
views
What do you use to generates summary statistics of sequence and quality data for PacBio?
genome sequence Assembly pacbio next-gen
updated 3.1 years ago by 44k • written 10.5 years ago by 9.8k
0
votes
10
replies
4.1k
views
Tools for metagenomics classification using long reads
metagenomics sequen alignment
updated 4.4 years ago by ▴ 30 • written 6.8 years ago by 9.8k
7
votes
10
replies
7.2k
views
How to filter unique reads from sam file?
bowtie2 sequencing alignment next-gen
updated 2.7 years ago by 44k • written 9.9 years ago by 9.8k
2
votes
6
replies
2.3k
views
bedtools slop set start to -1
bed gtf bedtools slop
updated 5.6 years ago by 36k • written 5.6 years ago by 9.8k
2
votes
5
replies
1.5k
views
UnicodeDecodeError while reading vcf file
SNP vcf bcftools merge
5.6 years ago by Medhat 9.8k
1
vote
22
replies
5.9k
views
Reading vcf file using python gives UnicodeDecodeError
python vcf
6.0 years ago by Medhat 9.8k
1
vote
3
replies
2.2k
views
Different output fields from efetch
python sequence efetch
updated 6.1 years ago by 165k • written 6.1 years ago by 9.8k
1
vote
4
replies
4.5k
views
Using snakemake with multiple output for calling SNP using clairvoyante
SNP snakemake
6.2 years ago by Medhat 9.8k
3
votes
11
replies
5.6k
views
pysam difference between template_length and reference_length
pysam genome next-gen
updated 6.2 years ago by 105k • written 6.2 years ago by 9.8k
1
vote
2
replies
1.7k
views
Is BWA consider insert size when define read mapped in proper pair
bwa alignment sequencing
updated 6.3 years ago by 165k • written 6.3 years ago by 9.8k
0
votes
4
replies
4.1k
views
appropriate way to use pysam.depth
python pysam
6.3 years ago by Medhat 9.8k
0
votes
7
replies
5.0k
views
download repeats annotation file
sequence annotations database
updated 6.3 years ago by ▴ 190 • written 8.3 years ago by 9.8k
3
votes
8
replies
1.9k
views
Retrieve title name by accession R vs Python
R Python Entrez
6.3 years ago by Medhat 9.8k
3
votes
2
replies
4.1k
views
best practices to use GATK with PacBio
GATK sequence SNP next-gen PacBio
3.8 years ago by Medhat 9.8k
0
votes
0
replies
1.3k
views
bcftools isec window option
sequencing vcf
updated 6.7 years ago by 20 • written 6.8 years ago by 9.8k
1
vote
2
replies
2.0k
views
vcf-compare Error "Use of uninitialized value"
vcf vcftools
updated 22 months ago by 44k • written 7.5 years ago by 9.8k
2
votes
4
replies
5.5k
views
report only primary alignment BWA-MEM
bwa sequence alignment
updated 7.2 years ago by 20 • written 7.3 years ago by 9.8k
0
votes
0
replies
925
views
PBSuite spots ambiguous insertion output value
sequencing
7.2 years ago by Medhat 9.8k
0
votes
2
replies
1.9k
views
bedtools what in B absent from A
sequencing bed software
7.3 years ago by Medhat 9.8k
2
votes
4
replies
1.2k
views
Honey spots Issue
software error SNP sequence
7.3 years ago by Medhat 9.8k
0
votes
0
replies
1.0k
views
Blasr 4G genome limitation
blasr sequence alignment
7.3 years ago by Medhat 9.8k
0
votes
3
replies
3.7k
views
CrossMap liftover failed
Assembly sequencing next-gen
updated 7.3 years ago by • 0 • written 8.0 years ago by 9.8k
0
votes
0
replies
1.5k
views
Tools to call SVs using corrected PacBio reads
PacBio SV sequencing
7.4 years ago by Medhat 9.8k
1
vote
5
replies
2.3k
views
what is the cases when the insert size between mate pairs is zero?
alignment next-gen sequence
updated 2.1 years ago by 44k • written 10.1 years ago by 9.8k
3
votes
4
replies
3.1k
views
tool to compare sv between two files
structure variation next-gen pacbio
updated 7.5 years ago by 12k • written 7.5 years ago by 9.8k
1
vote
2
replies
1.8k
views
unable to download file from plant ensembl
snp ensembl
updated 7.5 years ago by 24k • written 7.6 years ago by 9.8k
3
votes
6
replies
2.0k
views
deepTools draw coverage for specific region
alignment bam deepTools
updated 7.5 years ago by 105k • written 7.5 years ago by 9.8k
2
votes
2
replies
1.2k
views
divide vcf file by consequence
vcf awk
2.2 years ago by Medhat 9.8k
2
votes
2
replies
2.9k
views
how to use vcf2bed with .gz file
vcf SNP next-gen
7.8 years ago by Medhat 9.8k
2
votes
5
replies
3.2k
views
How to create/get cytoband file for Maize (non-model organism) genome
sequencing
updated 7.9 years ago by ★ 2.0k • written 7.9 years ago by 9.8k
0
votes
0
replies
1.3k
views
extract unique variant in sample
SNP next-gen
7.9 years ago by Medhat 9.8k
2
votes
6
replies
3.6k
views
Tools to detect structural variation in PacBio "long" reads
sequence SNP genome
8.0 years ago by Medhat 9.8k
0
votes
0
replies
2.2k
views
CrossMap lift over bed but not the same vcf file
SNP vcf bed sequence
8.0 years ago by Medhat 9.8k
0
votes
0
replies
1.7k
views
call sets resources to build indels recalibration model for maize (using GATK)
genome indels sequencing
8.1 years ago by Medhat 9.8k
1
vote
4
replies
7.3k
views
How To Calculate --Score-Min In Bowtie2
mapping bowtie
8.1 years ago by Medhat 9.8k
3
votes
2
replies
2.6k
views
how to exclude sequence from sam file?
sequencing mapping illumina sam mate-pairs
updated 3.0 years ago by 44k • written 10.3 years ago by 9.8k
3
votes
1
reply
3.6k
views
How chimeras reads generated in PacBio?
sequencing
updated 8.2 years ago by ▴ 160 • written 8.2 years ago by 9.8k
7
votes
11
replies
5.6k
views
Bowtie2 character encoding error
alignment software-error next-gen sequence
updated 3.0 years ago by 44k • written 10.2 years ago by 9.8k
1
vote
12
replies
3.6k
views
LoRDEC correction insufficient memory error
gene software error Assembly genome
8.7 years ago by Medhat 9.8k
0
votes
2
replies
2.2k
views
LSC alignment error
software-error sequence Assembly pacbio
updated 2.6 years ago by 44k • written 9.6 years ago by 9.8k
1
vote
3
replies
2.1k
views
can not get the alignment result from needle alignment
sequence alignment
updated 2.4 years ago by 44k • written 9.2 years ago by 9.8k
0
votes
2
replies
1.3k
views
detect variation between three samples
software sequence blast
updated 2.4 years ago by 44k • written 9.2 years ago by 9.8k
68 results • Page 1 of 2
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