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562
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comparison of gene models across tissues
elastinet TWAS models association
2.7 years ago by rheab1230 ▴ 150
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1
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1.3k
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Comment: Comment: gwas summary statistics
2.7 years ago by rheab1230 ▴ 150
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3
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1.3k
views
gwas summary statistics
AD gwas summary-statistics predixcan
updated 2.7 years ago by 23k • written 2.7 years ago by ▴ 150
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968
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Comment: Comment: genes associated with AD list
2.7 years ago by rheab1230 ▴ 150
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2
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968
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genes associated with AD list
snp variants alzheimer association genes
2.7 years ago by rheab1230 ▴ 150
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1
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845
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trans eqtl study for TWAS
twas eqtl GWAS bayesian
updated 2.6 years ago by ★ 3.0k • written 2.7 years ago by ▴ 150
5
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2
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1.6k
views
how to loop through various dataframes in R
dataframe R
updated 2.8 years ago by 12k • written 2.8 years ago by ▴ 150
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957
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Comment: Comment: Inquiry related to processing multiple db file simulataneously
2.8 years ago by rheab1230 ▴ 150
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2
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957
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Inquiry related to processing multiple db file simulataneously
sql R
updated 2.6 years ago by 45k • written 2.8 years ago by ▴ 150
5
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11
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5.1k
views
plotting AF in vcf files
AF vcf plotting
updated 2.9 years ago by ▴ 290 • written 4.2 years ago by ▴ 150
5
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1
reply
1.1k
views
Learning Linux advance commands
grep awk linux sed
updated 2.0 years ago by ▴ 60 • written 3.0 years ago by ▴ 150
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1
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1.3k
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Enhancer region
Chip-seq enhancer
updated 3.0 years ago by ▴ 20 • written 4.5 years ago by ▴ 150
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0
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1.0k
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Comment: Comment: develop model file after segregating vcf data into different ethnicity subgroup
3.0 years ago by rheab1230 ▴ 150
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2
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1.0k
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develop model file after segregating vcf data into different ethnicity subgroup
model machine vcf learning ethnicity
3.0 years ago by rheab1230 ▴ 150
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0
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1.6k
views
Comment: Comment: inverse normal transformation for gtex data
3.0 years ago by rheab1230 ▴ 150
3
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3
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1.6k
views
inverse normal transformation for gtex data
INT normalization gtex R
updated 2.9 years ago by ▴ 260 • written 3.0 years ago by ▴ 150
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0
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615
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different sample IDs between vcf and gtex gene count file
sample vcf IDs gene gtex count
3.0 years ago by rheab1230 ▴ 150
0
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0
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714
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Comment: Comment: filtering samples before normalization step
3.0 years ago by rheab1230 ▴ 150
0
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1
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714
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filtering samples before normalization step
TMM depth gtex normalization sequencing
3.0 years ago by rheab1230 ▴ 150
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0
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1.1k
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Comment: Comment: edgeR normalization
3.1 years ago by rheab1230 ▴ 150
0
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1
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1.1k
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edgeR normalization
TMM normalization edgeR read_counts
3.1 years ago by rheab1230 ▴ 150
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3
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2.1k
views
how to calculate %of missing genotype in vcf file
vcf imputation michigan genotype
updated 3.1 years ago by ★ 5.4k • written 3.1 years ago by ▴ 150
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1
reply
1.2k
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extract DS field from a genotype file
vcf bcftools genotype
updated 2.3 years ago by 45k • written 3.1 years ago by ▴ 150
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0
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2.4k
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Comment: Comment: difference between different field info in vcf file format
3.1 years ago by rheab1230 ▴ 150
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3
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2.4k
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difference between different field info in vcf file format
format GT vcf filr DS
3.1 years ago by rheab1230 ▴ 150
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0
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701
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Inquiry related to inverse quantile normalization
gtex normalization qtl genecount
3.1 years ago by rheab1230 ▴ 150
0
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0
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595
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inquiry related to gtex normalization
gene GTEX expression tissue normalization brain
3.2 years ago by rheab1230 ▴ 150
5
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1
reply
917
views
How can I download SNPs from HapMap European populations?
snp annotation gtex
updated 3.2 years ago by 2.9k • written 3.2 years ago by ▴ 150
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0
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647
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inquiry related to gtex normalization
gtex normalization gene count
3.2 years ago by rheab1230 ▴ 150
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0
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1.7k
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Comment: Comment: convert .bed format to .txt format
3.2 years ago by rheab1230 ▴ 150
3
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2
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1.7k
views
convert .bed format to .txt format
gene expression bed count
3.2 years ago by rheab1230 ▴ 150
0
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1
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1.6k
views
Comment: Comment: deseq2 normalization for Gtex datasets
3.2 years ago by rheab1230 ▴ 150
0
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1
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1.6k
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Comment: Comment: deseq2 normalization for Gtex datasets
3.2 years ago by rheab1230 ▴ 150
2
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4
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1.6k
views
deseq2 normalization for Gtex datasets
gene GTEX expression deseq2 tissue normalization brain
updated 3.2 years ago by 5.1k • written 3.2 years ago by ▴ 150
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0
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574
views
GTEx ID between vcf and gene count file
gene GTEx vcf count ID
3.2 years ago by rheab1230 ▴ 150
0
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0
replies
529
views
How to get SNP annotation file for GTEx data
SNP GTEx annotation rsid
3.3 years ago by rheab1230 ▴ 150
0
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0
replies
451
views
peertool to generate covariates file give an error
SNP covariates peertool gene
3.3 years ago by rheab1230 ▴ 150
0
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1
reply
779
views
how to predict gene expression from genotype file using already developed elastic net model
gene expression snp vcf
updated 3.4 years ago by 166k • written 3.4 years ago by ▴ 150
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0
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2.4k
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Comment: Comment: error while using cyvcf2 to parse the vcf file
3.4 years ago by rheab1230 ▴ 150
0
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1
reply
2.4k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
3.4 years ago by rheab1230 ▴ 150
1
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0
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2.4k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
3.4 years ago by rheab1230 ▴ 150
1
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1
reply
2.4k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
3.4 years ago by rheab1230 ▴ 150
5
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7
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2.4k
views
error while using cyvcf2 to parse the vcf file
cyvcf2 vcf htslib
updated 2.4 years ago by 45k • written 3.4 years ago by ▴ 150
0
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0
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2.4k
views
Comment: Comment: bcftools error
3.4 years ago by rheab1230 ▴ 150
1
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2
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2.4k
views
bcftools error
vcf bcftools genotype
updated 2.4 years ago by 45k • written 3.4 years ago by ▴ 150
1
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2
replies
1.5k
views
plotting venndiagram and find the overlap in R for rsid between model and vcf files.
rsid venndiagram overlap
updated 3.5 years ago by 5.1k • written 3.5 years ago by ▴ 150
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1
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1.2k
views
Comment: Comment: filtering out rsid from vcf files.
3.6 years ago by rheab1230 ▴ 150
0
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2
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1.2k
views
filtering out rsid from vcf files.
vcf genotype rsid gene
updated 3.6 years ago by 103k • written 3.6 years ago by ▴ 150
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0
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1.2k
views
Comment: Comment: split gtex genotype file by chromosome number
3.6 years ago by rheab1230 ▴ 150
0
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1
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23k
views
Comment: Comment: Easy way to split VCF file by chromosome
updated 2.6 years ago by 45k • written 3.7 years ago by ▴ 150
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