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0
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3
replies
833
views
gwas summary statistics
AD gwas summary-statistics predixcan
updated 15 months ago by 22k • written 15 months ago by ▴ 140
0
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0
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569
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Comment: Comment: genes associated with AD list
15 months ago by rheab1230 ▴ 140
3
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2
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569
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genes associated with AD list
snp variants alzheimer association genes
15 months ago by rheab1230 ▴ 140
0
votes
1
reply
470
views
trans eqtl study for TWAS
twas eqtl GWAS bayesian
updated 14 months ago by ★ 3.0k • written 15 months ago by ▴ 140
5
votes
2
replies
927
views
how to loop through various dataframes in R
dataframe R
updated 16 months ago by 11k • written 16 months ago by ▴ 140
0
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0
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567
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Comment: Comment: Inquiry related to processing multiple db file simulataneously
17 months ago by rheab1230 ▴ 140
0
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2
replies
567
views
Inquiry related to processing multiple db file simulataneously
sql R
updated 13 months ago by 43k • written 17 months ago by ▴ 140
5
votes
11
replies
3.5k
views
plotting AF in vcf files
AF vcf plotting
updated 17 months ago by ▴ 270 • written 2.7 years ago by ▴ 140
5
votes
1
reply
688
views
Learning Linux advance commands
grep awk linux sed
updated 7 months ago by ▴ 60 • written 18 months ago by ▴ 140
0
votes
1
reply
900
views
Enhancer region
Chip-seq enhancer
updated 18 months ago by ▴ 20 • written 3.0 years ago by ▴ 140
0
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0
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568
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Comment: Comment: develop model file after segregating vcf data into different ethnicity subgroup
18 months ago by rheab1230 ▴ 140
0
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2
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568
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develop model file after segregating vcf data into different ethnicity subgroup
model machine vcf learning ethnicity
18 months ago by rheab1230 ▴ 140
0
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0
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899
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Comment: Comment: inverse normal transformation for gtex data
19 months ago by rheab1230 ▴ 140
3
votes
3
replies
899
views
inverse normal transformation for gtex data
INT normalization gtex R
updated 18 months ago by ▴ 230 • written 19 months ago by ▴ 140
0
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0
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343
views
different sample IDs between vcf and gtex gene count file
sample vcf IDs gene gtex count
19 months ago by rheab1230 ▴ 140
0
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0
replies
381
views
Comment: Comment: filtering samples before normalization step
19 months ago by rheab1230 ▴ 140
0
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1
reply
381
views
filtering samples before normalization step
TMM depth gtex normalization sequencing
19 months ago by rheab1230 ▴ 140
0
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0
replies
680
views
Comment: Comment: edgeR normalization
19 months ago by rheab1230 ▴ 140
0
votes
1
reply
680
views
edgeR normalization
TMM normalization edgeR read_counts
19 months ago by rheab1230 ▴ 140
0
votes
3
replies
1.1k
views
how to calculate %of missing genotype in vcf file
vcf imputation michigan genotype
updated 19 months ago by ★ 5.3k • written 19 months ago by ▴ 140
0
votes
1
reply
772
views
extract DS field from a genotype file
vcf bcftools genotype
updated 10 months ago by 43k • written 20 months ago by ▴ 140
0
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0
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1.3k
views
Comment: Comment: difference between different field info in vcf file format
20 months ago by rheab1230 ▴ 140
4
votes
3
replies
1.3k
views
difference between different field info in vcf file format
format GT vcf filr DS
20 months ago by rheab1230 ▴ 140
0
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0
replies
427
views
Inquiry related to inverse quantile normalization
gtex normalization qtl genecount
20 months ago by rheab1230 ▴ 140
0
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0
replies
359
views
inquiry related to gtex normalization
gene GTEX expression tissue normalization brain
20 months ago by rheab1230 ▴ 140
5
votes
1
reply
544
views
How can I download SNPs from HapMap European populations?
snp annotation gtex
updated 20 months ago by 2.8k • written 20 months ago by ▴ 140
0
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0
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409
views
inquiry related to gtex normalization
gtex normalization gene count
21 months ago by rheab1230 ▴ 140
0
votes
0
replies
787
views
Comment: Comment: convert .bed format to .txt format
21 months ago by rheab1230 ▴ 140
3
votes
2
replies
787
views
convert .bed format to .txt format
gene expression bed count
21 months ago by rheab1230 ▴ 140
0
votes
1
reply
959
views
Comment: Comment: deseq2 normalization for Gtex datasets
21 months ago by rheab1230 ▴ 140
0
votes
1
reply
959
views
Comment: Comment: deseq2 normalization for Gtex datasets
21 months ago by rheab1230 ▴ 140
2
votes
4
replies
959
views
deseq2 normalization for Gtex datasets
gene GTEX expression deseq2 tissue normalization brain
updated 21 months ago by 3.9k • written 21 months ago by ▴ 140
0
votes
0
replies
337
views
GTEx ID between vcf and gene count file
gene GTEx vcf count ID
21 months ago by rheab1230 ▴ 140
0
votes
0
replies
310
views
How to get SNP annotation file for GTEx data
SNP GTEx annotation rsid
22 months ago by rheab1230 ▴ 140
0
votes
0
replies
311
views
peertool to generate covariates file give an error
SNP covariates peertool gene
23 months ago by rheab1230 ▴ 140
0
votes
1
reply
560
views
how to predict gene expression from genotype file using already developed elastic net model
gene expression snp vcf
updated 23 months ago by 161k • written 23 months ago by ▴ 140
0
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0
replies
1.4k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
23 months ago by rheab1230 ▴ 140
0
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1
reply
1.4k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
23 months ago by rheab1230 ▴ 140
1
vote
0
replies
1.4k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
23 months ago by rheab1230 ▴ 140
1
vote
1
reply
1.4k
views
Comment: Comment: error while using cyvcf2 to parse the vcf file
23 months ago by rheab1230 ▴ 140
5
votes
7
replies
1.4k
views
error while using cyvcf2 to parse the vcf file
cyvcf2 vcf htslib
updated 11 months ago by 43k • written 23 months ago by ▴ 140
0
votes
0
replies
1.7k
views
Comment: Comment: bcftools error
23 months ago by rheab1230 ▴ 140
1
vote
2
replies
1.7k
views
bcftools error
vcf bcftools genotype
updated 11 months ago by 43k • written 23 months ago by ▴ 140
1
vote
2
replies
1.0k
views
plotting venndiagram and find the overlap in R for rsid between model and vcf files.
rsid venndiagram overlap
updated 2.0 years ago by 4.6k • written 2.0 years ago by ▴ 140
0
votes
1
reply
738
views
Comment: Comment: filtering out rsid from vcf files.
2.2 years ago by rheab1230 ▴ 140
0
votes
2
replies
738
views
filtering out rsid from vcf files.
vcf genotype rsid gene
updated 2.2 years ago by 100k • written 2.2 years ago by ▴ 140
0
votes
0
replies
792
views
Comment: Comment: split gtex genotype file by chromosome number
2.2 years ago by rheab1230 ▴ 140
0
votes
1
reply
15k
views
Comment: Comment: Easy way to split VCF file by chromosome
updated 14 months ago by 43k • written 2.2 years ago by ▴ 140
0
votes
2
replies
792
views
split gtex genotype file by chromosome number
genotype data vcf GTEx split_by_Chromosome
2.2 years ago by rheab1230 ▴ 140
0
votes
1
reply
15k
views
Comment: Comment: Easy way to split VCF file by chromosome
updated 14 months ago by 43k • written 2.2 years ago by ▴ 140
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