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3
votes
2
replies
1.2k
views
Did TCGA consortium recommend any best practice guideline for cross-sample RNAseq comparison ?
RNA-Seq
updated 3.8 years ago by ★ 5.8k • written 3.8 years ago by ▴ 280
0
votes
1
reply
686
views
which exome pipeline to use post PrecisionFDA challenges ?
WES NGS
updated 4.4 years ago by 8.2k • written 4.4 years ago by ▴ 280
0
votes
0
replies
803
views
Comment: C: is there a web-based tool to cross-species compare multiple nucleotide or protei
4.4 years ago by CrazyB ▴ 280
1
vote
3
replies
803
views
is there a web-based tool to cross-species compare multiple nucleotide or protein sequences for identity and homology in batches
alignment homology
updated 4.4 years ago by ★ 16k • written 4.4 years ago by ▴ 280
3
votes
5
replies
48k
views
Convert text file to VCF file ?
vcf
updated 10 months ago by 43k • written 9.2 years ago by ▴ 280
1
vote
1
reply
1.1k
views
"high" quality RNA but poor RNAseq results
RNA-Seq
updated 5.0 years ago by 8.2k • written 5.0 years ago by ▴ 280
0
votes
2
replies
2.0k
views
batch effects of RNAseq data from public databases - need to correct or not ?
RNA-Seq
updated 5.1 years ago by ★ 1.1k • written 5.1 years ago by ▴ 280
10
votes
2
replies
2.0k
views
Are all RPKM/FPKMs in RNAseq "equal" ?
RNA-Seq rpkm
updated 5.1 years ago by 8.2k • written 5.1 years ago by ▴ 280
0
votes
0
replies
1.4k
views
Comment: C: anyone with experience of RNAseq from FFPE samples on Novaseq vs. that on Hiseq
5.2 years ago by CrazyB ▴ 280
1
vote
2
replies
1.4k
views
anyone with experience of RNAseq from FFPE samples on Novaseq vs. that on Hiseq
RNA-Seq Hiseq Novaseq
updated 5.2 years ago by 141k • written 5.2 years ago by ▴ 280
2
votes
5
replies
1.6k
views
references for fold-change cutoff
transcriptome fold-change cutoff
updated 5.5 years ago by ★ 3.0k • written 5.5 years ago by ▴ 280
1
vote
0
replies
1.6k
views
Comment: C: references for fold-change cutoff
5.5 years ago by CrazyB ▴ 280
0
votes
0
replies
1.6k
views
Answer: A: references for fold-change cutoff
5.5 years ago by CrazyB ▴ 280
0
votes
0
replies
1.1k
views
median probe intensity does not correlate with RNA-seq data - what's the best practice to compare the expression data?
RNA-Seq microarray
5.6 years ago by CrazyB ▴ 280
4
votes
6
replies
2.2k
views
phased and unphased genotype results differ ?
vcf phased genotype
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 280
0
votes
1
reply
2.2k
views
Comment: C: phased and unphased genotype results differ ?
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 280
0
votes
1
reply
2.6k
views
any tools for annotating "canonical splice site variants"
splice site annotation
updated 23 months ago by 43k • written 9.2 years ago by ▴ 280
0
votes
1
reply
1.4k
views
Comment: C: looking for large human genomes databases
6.7 years ago by CrazyB ▴ 280
2
votes
4
replies
1.4k
views
looking for large human genomes databases
genome
6.7 years ago by CrazyB ▴ 280
1
vote
1
reply
1.9k
views
how to re-arrange the gene expression heatmap to maximize the visual effect of the result
heatmap
updated 6.9 years ago by 27k • written 6.9 years ago by ▴ 280
3
votes
4
replies
4.8k
views
is there a value of ranking genes based on p-value in RNA-seq data
rna-seq
updated 6.9 years ago by 35k • written 6.9 years ago by ▴ 280
0
votes
0
replies
4.8k
views
Comment: C: is there a value of ranking genes based on p-value in RNA-seq data
6.9 years ago by CrazyB ▴ 280
0
votes
0
replies
1.4k
views
interpreting the untransmitted allele in TdT (transmission disequilibrium test)
tdt
7.6 years ago by CrazyB ▴ 280
0
votes
0
replies
2.8k
views
Comment: C: how to find the haplotype info in population genomic databases
7.8 years ago by CrazyB ▴ 280
2
votes
2
replies
2.8k
views
how to find the haplotype info in population genomic databases
haplotype 1000genomes ExAC
updated 7.8 years ago by ★ 5.2k • written 7.8 years ago by ▴ 280
9
votes
9
replies
6.0k
views
8 follow
how to find SNP positions (for non-bioinformaticians)
snp dbsnp BioMart
updated 15 months ago by 43k • written 8.9 years ago by ▴ 280
4
votes
5
replies
4.0k
views
how to add pedigree info into VCF
vcf ped pedigree
updated 8.1 years ago by 43k • written 8.1 years ago by ▴ 280
0
votes
0
replies
2.2k
views
Comment: C: phased and unphased genotype results differ ?
8.2 years ago by CrazyB ▴ 280
1
vote
2
replies
2.2k
views
understanding Cuffdiff comparison (or a general understanding of pair-wise v muti-groups comparision)
cuffdiff cufflinks RNA-Seq
updated 8.6 years ago by 104k • written 8.6 years ago by ▴ 280
1
vote
4
replies
3.5k
views
a question about some "basic numbers" for rna-seq experiments
RNA-seq
updated 16 months ago by 43k • written 8.8 years ago by ▴ 280
0
votes
0
replies
1.9k
views
Comment: C: Regarding deleted SNPs (in dbSNP) due to mapping or clustering errors found in V
8.9 years ago by CrazyB ▴ 280
1
vote
2
replies
1.9k
views
Regarding deleted SNPs (in dbSNP) due to mapping or clustering errors found in VCF file
vcf genome snp
updated 16 months ago by 43k • written 8.9 years ago by ▴ 280
0
votes
0
replies
6.0k
views
Comment: C: how to find SNP positions (for non-bioinformaticians)
8.9 years ago by CrazyB ▴ 280
0
votes
0
replies
3.2k
views
my VCF file was said to contain no header/meta data when using vcftools
ngs vcf PLINK vcftools
updated 15 months ago by 43k • written 8.9 years ago by ▴ 280
0
votes
0
replies
4.1k
views
Comment: Comment: a VERY BASIC question about "add or replace groups" for BAM files
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 280
0
votes
1
reply
4.1k
views
Comment: Comment: a VERY BASIC question about "add or replace groups" for BAM files
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 280
5
votes
4
replies
4.1k
views
a VERY BASIC question about "add or replace groups" for BAM files
read-group picard
updated 2.0 years ago by 43k • written 9.2 years ago by ▴ 280
0
votes
0
replies
4.0k
views
Comment: C: what are the differences between Biostars - bioinformatics explained and Biostar
9.3 years ago by CrazyB ▴ 280
6
votes
2
replies
4.0k
views
what are the differences between Biostars - bioinformatics explained and Biostars - galaxy explained?
ngs
updated 9.3 years ago by 104k • written 9.3 years ago by ▴ 280
0
votes
1
reply
2.7k
views
Comment: C: Identifiers Have No Match In Ucsc Xyz Tables? Any Easier Solution?
10.2 years ago by CrazyB ▴ 280
1
vote
3
replies
2.7k
views
Identifiers Have No Match In Ucsc Xyz Tables? Any Easier Solution?
identifiers
10.2 years ago by CrazyB ▴ 280
1
vote
1
reply
2.5k
views
All Probes In The Array Show Larger Than 0.1 Fdr ??
differential-expression microarray
updated 10.4 years ago by 8.2k • written 10.4 years ago by ▴ 280
8
votes
4
replies
10k
views
Negative B-Statistic Values In Limma/Microarray Differential Expression
limma differential-expression
updated 10.4 years ago by 26k • written 10.4 years ago by ▴ 280
0
votes
1
reply
10k
views
Comment: C: Negative B-Statistic Values In Limma/Microarray Differential Expression
10.4 years ago by CrazyB ▴ 280
0
votes
0
replies
3.5k
views
Comment: C: Analysis Of Individual Gene Expression Values
10.4 years ago by CrazyB ▴ 280
0
votes
1
reply
3.5k
views
Comment: C: Analysis Of Individual Gene Expression Values
10.4 years ago by CrazyB ▴ 280
4
votes
5
replies
3.5k
views
Analysis Of Individual Gene Expression Values
microarray gene-expression
updated 10.4 years ago by 104k • written 10.4 years ago by ▴ 280
0
votes
0
replies
1.5k
views
Does Anyone Know What These Target Enrichment "Probe Lengths" Mean?
ngs enrichment
10.8 years ago by CrazyB ▴ 280
4
votes
3
replies
2.3k
views
A Math Problem In Hiseq ??
ngs hiseq
updated 10.8 years ago by 7.8k • written 10.8 years ago by ▴ 280
0
votes
0
replies
2.3k
views
Comment: C: A Math Problem In Hiseq ??
10.8 years ago by CrazyB ▴ 280
58 results • Page 1 of 2
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