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4
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4
replies
6.0k
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How To Prepare Gatk .Vcf Files Output For Annovar ?
variant calling gatk annovar vcf
updated 11 months ago by 39k • written 9.9 years ago by ▴ 750
7
votes
4
replies
6.2k
views
In Rna-Seq Data, How To Separate Intronic, Exonic, Non-Coding, Snornas ?
rna
updated 2.4 years ago by 20 • written 9.2 years ago by ▴ 750
1
vote
5
replies
9.6k
views
What Agilent Interval Files (.Bed) Should I Use For Exome Variant Calling With Gatk?
bed agilent gatk
updated 3.3 years ago by ▴ 310 • written 9.5 years ago by ▴ 750
0
votes
1
reply
4.0k
views
Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 3.4 years ago by 39k • written 9.1 years ago by ▴ 750
0
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1
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4.0k
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Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 3.4 years ago by 39k • written 9.1 years ago by ▴ 750
0
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1
reply
6.2k
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Comment: C: In Rna-Seq Data, How To Separate Intronic, Exonic, Non-Coding, Snornas ?
updated 3.7 years ago by 39k • written 9.2 years ago by ▴ 750
0
votes
1
reply
10k
views
Comment: C: Paired-End Reads Alignment For Variant Calling ?
updated 3.7 years ago by 39k • written 9.9 years ago by ▴ 750
0
votes
1
reply
3.5k
views
Tophat Error: It Tries To Execute Lines In Fastq Files
tophat bowtie error
updated 3.7 years ago by 20 • written 9.9 years ago by ▴ 750
0
votes
4
replies
3.6k
views
Tophat Error - What Does This Mean?
tophat error bowtie
updated 4.2 years ago by 20 • written 9.8 years ago by ▴ 750
2
votes
7
replies
8.0k
views
How To Filter Vcf By Coverage?
vcf coverage
updated 5.9 years ago by • 0 • written 9.2 years ago by ▴ 750
4
votes
11
replies
4.0k
views
How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
subclone cancer heterogeneity
updated 20 months ago by 39k • written 9.1 years ago by ▴ 750
28
votes
13
replies
16k
views
10 follow
Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
gatk
updated 6.7 years ago by ▴ 30 • written 9.8 years ago by ▴ 750
29
votes
19
replies
33k
views
12 follow
Trimming Adapters
adaptor hiseq
updated 7.6 years ago by ★ 9.3k • written 9.9 years ago by ▴ 750
6
votes
2
replies
4.5k
views
annotating MAF files
MAF annotation
updated 19 months ago by 39k • written 8.9 years ago by ▴ 750
2
votes
3
replies
3.7k
views
Inferring zygosity information from MAF
MAF
updated 19 months ago by 39k • written 8.9 years ago by ▴ 750
0
votes
0
replies
3.7k
views
Comment: Comment: Dissecting number of forward/reverse reads from GATK output
updated 18 months ago by 39k • written 8.9 years ago by ▴ 750
2
votes
3
replies
3.7k
views
Dissecting number of forward/reverse reads from GATK output
reads gatk
updated 18 months ago by 39k • written 8.9 years ago by ▴ 750
5
votes
2
replies
3.3k
views
Downloadable database for human pathways and the associated genes
pathway database
updated 20 months ago by 39k • written 9.0 years ago by ▴ 750
4
votes
3
replies
4.9k
views
How To Convert Hg19_Known_Gene From Text Format To Gtf Or Bed?
hg19 bed format conversion gtf
updated 9.0 years ago by ★ 2.2k • written 9.8 years ago by ▴ 750
3
votes
5
replies
5.9k
views
What is ref sequence name in BAM file header ?
cn.mops cnv
updated 20 months ago by 39k • written 9.1 years ago by ▴ 750
0
votes
1
reply
4.0k
views
Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
9.1 years ago by newDNASeqer ▴ 750
3
votes
2
replies
5.0k
views
Tools For Analyzing Copy Number Variation On All-Tumor Exome-Seq Samples
exome cnv
updated 9.2 years ago by ★ 3.4k • written 9.2 years ago by ▴ 750
0
votes
0
replies
8.0k
views
Comment: C: How To Filter Vcf By Coverage?
9.2 years ago by newDNASeqer ▴ 750
0
votes
1
reply
3.0k
views
Comment: C: Visualizing Cancer Heterogeneity Results From Ngs Data
9.2 years ago by newDNASeqer ▴ 750
0
votes
1
reply
3.0k
views
Comment: C: Visualizing Cancer Heterogeneity Results From Ngs Data
9.2 years ago by newDNASeqer ▴ 750
2
votes
6
replies
3.0k
views
Visualizing Cancer Heterogeneity Results From Ngs Data
cancer visualization ngs
updated 9.2 years ago by 22k • written 9.2 years ago by ▴ 750
0
votes
0
replies
7.8k
views
Comment: C: Search A Dna Sequence Motif In Bam File?
9.2 years ago by newDNASeqer ▴ 750
3
votes
2
replies
7.8k
views
Search A Dna Sequence Motif In Bam File?
motif dna bam
updated 9.2 years ago by 13k • written 9.2 years ago by ▴ 750
7
votes
4
replies
6.1k
views
Practice Of Filtering Vcf Files (From Gatk)
filter vcf gatk
updated 9.3 years ago by ★ 1.6k • written 9.3 years ago by ▴ 750
2
votes
1
reply
8.4k
views
How To Create A .Bed File With A Few Candidate Genes?
gene
updated 9.4 years ago by 7.3k • written 9.4 years ago by ▴ 750
5
votes
5
replies
6.4k
views
How Do You Usually Filter Variant Calling Results?
filter
updated 9.4 years ago by 3.4k • written 9.4 years ago by ▴ 750
1
vote
2
replies
2.4k
views
Large Data Set Analysis With Cuffdiff
cuffdiff rnaseq
updated 15 months ago by 39k • written 9.4 years ago by ▴ 750
0
votes
1
reply
2.2k
views
How To Calculate What Gene Expression Is Significant In Cuffdiff
cuffdiff
9.6 years ago by newDNASeqer ▴ 750
0
votes
1
reply
2.2k
views
How To Merge Cuffdiff (Gene_Exp.Diff) Results From Two Batches Or Rnaseq Data?
cuffdiff cuffmerge
updated 9.6 years ago by 11k • written 9.6 years ago by ▴ 750
1
vote
2
replies
3.4k
views
Cuffdiff Error With Mouse Mm9 Genome Reference
cuffdiff
updated 9.7 years ago by 103k • written 9.7 years ago by ▴ 750
0
votes
1
reply
2.5k
views
Cuffmerge Error
cuffmerge
updated 9.7 years ago by 103k • written 9.7 years ago by ▴ 750
3
votes
1
reply
4.0k
views
Qscript Example For Pipelining Gatk With Queue
gatk
updated 9.7 years ago by ▴ 880 • written 9.7 years ago by ▴ 750
1
vote
2
replies
1.9k
views
Tophat: Option --Bowtie Not A Unique Prefix
tophat bowtie
updated 9.7 years ago by ▴ 110 • written 9.7 years ago by ▴ 750
0
votes
0
replies
4.7k
views
Comment: Comment: Tophat - Bowtie 1: Index Error? What'S Wrong?
updated 19 months ago by 39k • written 9.7 years ago by ▴ 750
0
votes
1
reply
4.7k
views
Comment: Comment: Tophat - Bowtie 1: Index Error? What'S Wrong?
updated 19 months ago by 39k • written 9.7 years ago by ▴ 750
1
vote
5
replies
4.7k
views
Tophat - Bowtie 1: Index Error? What'S Wrong?
bowtie
updated 19 months ago by 39k • written 9.7 years ago by ▴ 750
2
votes
5
replies
4.1k
views
How To Merge Cuffdiff Results To Make A Big Table?
cuffdiff
updated 9.7 years ago by 11k • written 9.7 years ago by ▴ 750
98
votes
9
replies
116k
views
11 follow
How To Merge Two Fastq.Gz Files?
merge fastq
updated 13 months ago by ▴ 40 • written 9.7 years ago by ▴ 750
0
votes
1
reply
4.1k
views
Comment: C: How To Merge Cuffdiff Results To Make A Big Table?
9.7 years ago by newDNASeqer ▴ 750
0
votes
1
reply
3.6k
views
Comment: C: Tophat Error - What Does This Mean?
9.8 years ago by newDNASeqer ▴ 750
0
votes
0
replies
4.0k
views
Comment: C: Help Needed With Annovar - Csv Summary
9.8 years ago by newDNASeqer ▴ 750
3
votes
2
replies
4.0k
views
Help Needed With Annovar - Csv Summary
annovar vcf
updated 9.8 years ago by 3.4k • written 9.8 years ago by ▴ 750
5
votes
2
replies
2.9k
views
Why # Of Reads From Accepted_Hits.Bam + Unmapped.Bam > # Of Reads In Fastq File?
tophat fastq reads
updated 9.8 years ago by ▴ 30 • written 9.8 years ago by ▴ 750
18
votes
12
replies
8.9k
views
11 follow
How To Split Reads For Different Flowcell Lanes In Fastq Files?
split reads
updated 2.1 years ago by ▴ 500 • written 9.8 years ago by ▴ 750
16
votes
6
replies
12k
views
Vcf File --> Gene/Protein Mutation Information
vcf mutation annovar
updated 9.9 years ago by 3.4k • written 9.9 years ago by ▴ 750
67 results • Page 1 of 2
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