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4
votes
4
replies
7.2k
views
How To Prepare Gatk .Vcf Files Output For Annovar ?
variant calling gatk annovar vcf
updated 3.2 years ago by 45k • written 12.2 years ago by ▴ 790
7
votes
4
replies
7.2k
views
In Rna-Seq Data, How To Separate Intronic, Exonic, Non-Coding, Snornas ?
rna
updated 4.7 years ago by 20 • written 11.5 years ago by ▴ 790
2
votes
5
replies
11k
views
What Agilent Interval Files (.Bed) Should I Use For Exome Variant Calling With Gatk?
bed agilent gatk
updated 5.6 years ago by ▴ 310 • written 11.8 years ago by ▴ 790
0
votes
1
reply
5.7k
views
Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 5.7 years ago by 45k • written 11.4 years ago by ▴ 790
0
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1
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5.7k
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Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 5.7 years ago by 45k • written 11.4 years ago by ▴ 790
0
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1
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7.2k
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Comment: C: In Rna-Seq Data, How To Separate Intronic, Exonic, Non-Coding, Snornas ?
updated 5.9 years ago by 45k • written 11.5 years ago by ▴ 790
0
votes
1
reply
12k
views
Comment: C: Paired-End Reads Alignment For Variant Calling ?
updated 6.0 years ago by 45k • written 12.2 years ago by ▴ 790
0
votes
1
reply
4.2k
views
Tophat Error: It Tries To Execute Lines In Fastq Files
tophat bowtie error
updated 6.0 years ago by 20 • written 12.1 years ago by ▴ 790
0
votes
4
replies
4.4k
views
Tophat Error - What Does This Mean?
tophat error bowtie
updated 6.5 years ago by 20 • written 12.1 years ago by ▴ 790
2
votes
7
replies
9.8k
views
How To Filter Vcf By Coverage?
vcf coverage
updated 8.2 years ago by • 0 • written 11.5 years ago by ▴ 790
4
votes
11
replies
5.7k
views
How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
subclone cancer heterogeneity
updated 4.0 years ago by 45k • written 11.4 years ago by ▴ 790
28
votes
13
replies
19k
views
10 follow
Gatk - Haplotypecaller Is So Slow, What Is Faster And As Good?
gatk
updated 9.0 years ago by ▴ 30 • written 12.1 years ago by ▴ 790
31
votes
19
replies
37k
views
12 follow
Trimming Adapters
adaptor hiseq
updated 9.9 years ago by ★ 9.6k • written 12.2 years ago by ▴ 790
6
votes
2
replies
6.1k
views
annotating MAF files
MAF annotation
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 790
2
votes
3
replies
4.8k
views
Inferring zygosity information from MAF
MAF
updated 3.9 years ago by 45k • written 11.2 years ago by ▴ 790
0
votes
0
replies
4.5k
views
Comment: Comment: Dissecting number of forward/reverse reads from GATK output
updated 3.8 years ago by 45k • written 11.2 years ago by ▴ 790
2
votes
3
replies
4.5k
views
Dissecting number of forward/reverse reads from GATK output
reads gatk
updated 3.8 years ago by 45k • written 11.2 years ago by ▴ 790
5
votes
2
replies
4.1k
views
Downloadable database for human pathways and the associated genes
pathway database
updated 3.9 years ago by 45k • written 11.3 years ago by ▴ 790
4
votes
3
replies
5.6k
views
How To Convert Hg19_Known_Gene From Text Format To Gtf Or Bed?
hg19 bed format conversion gtf
updated 11.3 years ago by ★ 2.3k • written 12.1 years ago by ▴ 790
3
votes
5
replies
7.7k
views
What is ref sequence name in BAM file header ?
cn.mops cnv
updated 4.0 years ago by 45k • written 11.3 years ago by ▴ 790
0
votes
1
reply
5.7k
views
Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
11.4 years ago by newDNASeqer ▴ 790
3
votes
2
replies
6.0k
views
Tools For Analyzing Copy Number Variation On All-Tumor Exome-Seq Samples
exome cnv
updated 11.5 years ago by ★ 3.4k • written 11.5 years ago by ▴ 790
0
votes
0
replies
9.8k
views
Comment: C: How To Filter Vcf By Coverage?
11.5 years ago by newDNASeqer ▴ 790
0
votes
1
reply
4.0k
views
Comment: C: Visualizing Cancer Heterogeneity Results From Ngs Data
11.5 years ago by newDNASeqer ▴ 790
0
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1
reply
4.0k
views
Comment: C: Visualizing Cancer Heterogeneity Results From Ngs Data
11.5 years ago by newDNASeqer ▴ 790
2
votes
6
replies
4.0k
views
Visualizing Cancer Heterogeneity Results From Ngs Data
cancer visualization ngs
updated 11.5 years ago by 22k • written 11.5 years ago by ▴ 790
0
votes
0
replies
9.8k
views
Comment: C: Search A Dna Sequence Motif In Bam File?
11.5 years ago by newDNASeqer ▴ 790
3
votes
2
replies
9.8k
views
Search A Dna Sequence Motif In Bam File?
motif dna bam
updated 11.5 years ago by 13k • written 11.5 years ago by ▴ 790
7
votes
4
replies
7.5k
views
Practice Of Filtering Vcf Files (From Gatk)
filter vcf gatk
updated 11.6 years ago by ★ 1.6k • written 11.6 years ago by ▴ 790
2
votes
1
reply
10k
views
How To Create A .Bed File With A Few Candidate Genes?
gene
updated 11.7 years ago by 7.3k • written 11.7 years ago by ▴ 790
5
votes
5
replies
7.9k
views
How Do You Usually Filter Variant Calling Results?
filter
updated 11.7 years ago by 3.5k • written 11.7 years ago by ▴ 790
1
vote
2
replies
3.1k
views
Large Data Set Analysis With Cuffdiff
cuffdiff rnaseq
updated 3.6 years ago by 45k • written 11.7 years ago by ▴ 790
0
votes
1
reply
2.7k
views
How To Calculate What Gene Expression Is Significant In Cuffdiff
cuffdiff
11.9 years ago by newDNASeqer ▴ 790
0
votes
1
reply
2.7k
views
How To Merge Cuffdiff (Gene_Exp.Diff) Results From Two Batches Or Rnaseq Data?
cuffdiff cuffmerge
updated 11.9 years ago by 11k • written 11.9 years ago by ▴ 790
1
vote
2
replies
4.0k
views
Cuffdiff Error With Mouse Mm9 Genome Reference
cuffdiff
updated 12.0 years ago by 105k • written 12.0 years ago by ▴ 790
0
votes
1
reply
2.9k
views
Cuffmerge Error
cuffmerge
updated 12.0 years ago by 105k • written 12.0 years ago by ▴ 790
3
votes
1
reply
4.6k
views
Qscript Example For Pipelining Gatk With Queue
gatk
updated 12.0 years ago by ▴ 890 • written 12.0 years ago by ▴ 790
1
vote
2
replies
2.5k
views
Tophat: Option --Bowtie Not A Unique Prefix
tophat bowtie
updated 12.0 years ago by ▴ 130 • written 12.0 years ago by ▴ 790
0
votes
0
replies
5.4k
views
Comment: Comment: Tophat - Bowtie 1: Index Error? What'S Wrong?
updated 3.9 years ago by 45k • written 12.0 years ago by ▴ 790
0
votes
1
reply
5.4k
views
Comment: Comment: Tophat - Bowtie 1: Index Error? What'S Wrong?
updated 3.9 years ago by 45k • written 12.0 years ago by ▴ 790
1
vote
5
replies
5.4k
views
Tophat - Bowtie 1: Index Error? What'S Wrong?
bowtie
updated 3.9 years ago by 45k • written 12.0 years ago by ▴ 790
2
votes
5
replies
4.8k
views
How To Merge Cuffdiff Results To Make A Big Table?
cuffdiff
updated 12.0 years ago by 11k • written 12.0 years ago by ▴ 790
103
votes
9
replies
138k
views
11 follow
How To Merge Two Fastq.Gz Files?
merge fastq
updated 3.4 years ago by ▴ 50 • written 12.0 years ago by ▴ 790
0
votes
1
reply
4.8k
views
Comment: C: How To Merge Cuffdiff Results To Make A Big Table?
12.0 years ago by newDNASeqer ▴ 790
0
votes
1
reply
4.4k
views
Comment: C: Tophat Error - What Does This Mean?
12.1 years ago by newDNASeqer ▴ 790
0
votes
0
replies
4.9k
views
Comment: C: Help Needed With Annovar - Csv Summary
12.1 years ago by newDNASeqer ▴ 790
3
votes
2
replies
4.9k
views
Help Needed With Annovar - Csv Summary
annovar vcf
updated 12.1 years ago by 3.5k • written 12.1 years ago by ▴ 790
5
votes
2
replies
3.5k
views
Why # Of Reads From Accepted_Hits.Bam + Unmapped.Bam > # Of Reads In Fastq File?
tophat fastq reads
updated 12.1 years ago by ▴ 30 • written 12.1 years ago by ▴ 790
19
votes
16
replies
12k
views
13 follow
How To Split Reads For Different Flowcell Lanes In Fastq Files?
split reads
updated 11 months ago by • 0 • written 12.1 years ago by ▴ 790
17
votes
6
replies
14k
views
Vcf File --> Gene/Protein Mutation Information
vcf mutation annovar
updated 12.2 years ago by 3.5k • written 12.2 years ago by ▴ 790
67 results • Page 1 of 2
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