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questions
4
votes
2
replies
1.6k
views
"heightweight" R-dataset data-structure?
heavyweight
R-language
3.1 years ago by
natasha.sernova
★ 4.0k
0
votes
1
reply
600
views
align 230-ribonucleotide fragment 100 times
alignment tool
a long nucleotide fragment
updated 3.3 years ago by
Biostar
20 • written 3.4 years ago by
natasha.sernova
★ 4.0k
2
votes
3
replies
1.4k
views
The SARS-CoV-2 genome alignment option
SARS-CoV-2
mafft
MAFFT-L-INS-i
4.0 years ago by
natasha.sernova
★ 4.0k
6
votes
7
replies
1.2k
views
Examples of structure-based functional comparison of enzyme active centers
protein structure
functional comparison
updated 4.5 years ago by
Joe
21k • written 4.5 years ago by
natasha.sernova
★ 4.0k
8
votes
13
replies
1.3k
views
How to find three consecutive orthologous genes in 800 bacterial genomes?
genome
bacteria
software
alignment
updated 4.6 years ago by
Mensur Dlakic
★ 27k • written 4.6 years ago by
natasha.sernova
★ 4.0k
4
votes
6
replies
850
views
A reliable tool to predict attenuators in bacterial genomes
soft
bacteria
attenuator
updated 4.6 years ago by
Mensur Dlakic
★ 27k • written 4.6 years ago by
natasha.sernova
★ 4.0k
4
votes
4
replies
976
views
transcription site search tools in bacterial gene upstreams
gene upstream
bacterial genome
TranscFactor
updated 5.1 years ago by
Asaf
10k • written 5.1 years ago by
natasha.sernova
★ 4.0k
4
votes
4
replies
1.8k
views
RNA-secondary structure prediction software (T-boxes, riboswitches and attenuators search)
T-box
riboswitch
attenuator
RNA
5.2 years ago by
natasha.sernova
★ 4.0k
8
votes
7
replies
1.6k
views
How to run Py-script 300 times with 3 new variables and a new output-file each time?
python 2 output
updated 5.8 years ago by
finswimmer
16k • written 5.8 years ago by
natasha.sernova
★ 4.0k
4
votes
4
replies
1.4k
views
Bacterial known pathway - the easiest way to find and download 1:1 orthologs to each ferment involved
genome
OMA
updated 6.3 years ago by
Adrian Altenhoff
★ 1.1k • written 6.3 years ago by
natasha.sernova
★ 4.0k
1
vote
3
replies
5.8k
views
How to convert a .gbff to the .gbk using batch method (to do it computationally for several bacteria)
gbff
genome
gbk
updated 13 months ago by
Ram
43k • written 6.4 years ago by
natasha.sernova
★ 4.0k
4
votes
11
replies
1.3k
views
genome databases of ancient bacteria, in particular ancient gram-positive ones
genome
firmicutes
database
ancient bacteria
updated 6.5 years ago by
Kevin Blighe
87k • written 6.5 years ago by
natasha.sernova
★ 4.0k
48
votes
26
replies
37k
views
14 follow
how to convert a long fasta-file into many separate single fasta sequences
sequence
fasta
updated 2.5 years ago by
Ram
43k • written 9.8 years ago by
natasha.sernova
★ 4.0k
5
votes
4
replies
2.0k
views
OMA current state and its updates
oma
orthologs
bacteria
update
updated 7.1 years ago by
Christophe Dessimoz
▴ 740 • written 7.1 years ago by
natasha.sernova
★ 4.0k
3
votes
8
replies
3.2k
views
How to transform locus_tags to protein sequences (bacteria)
bacteria
locus
eutils
updated 7.1 years ago by
pure_reason
▴ 10 • written 7.1 years ago by
natasha.sernova
★ 4.0k
1
vote
2
replies
2.2k
views
How to find find all human tRNA-sequences using Bio.Entrez?
tRNA-sequence
human
Bio.Entrez
7.4 years ago by
natasha.sernova
★ 4.0k
0
votes
1
reply
2.2k
views
How to read SwissProt file with regexps in Python
python
regexp
updated 7.4 years ago by
WouterDeCoster
47k • written 7.4 years ago by
natasha.sernova
★ 4.0k
10
votes
10
replies
4.9k
views
Just complement or reverse sequence fom Biopython, but not reverse-complement one!
Biopython
reverse
complement
updated 7.4 years ago by
lakhujanivijay
5.8k • written 7.4 years ago by
natasha.sernova
★ 4.0k
6
votes
4
replies
1.6k
views
where to find detailed description and working examples of Python regular expressions?
Python
regexp
7.4 years ago by
natasha.sernova
★ 4.0k
4
votes
7
replies
6.7k
views
how to change and exchange columns or row order in csv-file
genome
sequence
csv
8.2 years ago by
natasha.sernova
★ 4.0k
9
votes
15
replies
3.0k
views
a hash with a pair of sequences as a value
hash
python
Perl
dictionary
updated 21 months ago by
Ram
43k • written 8.4 years ago by
natasha.sernova
★ 4.0k
0
votes
0
replies
1.8k
views
Prokaryotic nucleotide (gi-number OR ID) database
gene
gi-number
DNA
protein
translation
updated 8.7 years ago by
Biostar
20 • written 8.7 years ago by
natasha.sernova
★ 4.0k
5
votes
13
replies
3.8k
views
Tools to find the unique proteins (without orthologs) in a bacterial taxon
orthologs
protein
taxon
OMA
bacteria
updated 16 months ago by
Ram
43k • written 8.8 years ago by
natasha.sernova
★ 4.0k
0
votes
1
reply
1.7k
views
a tool to transform any protein GI-number to the GI-number of its transcript, mRNA
protein
mRNA
transcript
GI-number
updated 15 months ago by
Ram
43k • written 8.9 years ago by
natasha.sernova
★ 4.0k
0
votes
0
replies
2.0k
views
How To Split Hhm_Db Into Hhm-Files?
updated 9.0 years ago by
Biostar
20 • written 10.4 years ago by
natasha.sernova
★ 4.0k
7
votes
10
replies
2.6k
views
how to find and replace the atypical aas in a protein fasta-file, remembering their protein position
perl
fasta
protein
updated 22 months ago by
Ram
43k • written 9.1 years ago by
natasha.sernova
★ 4.0k
0
votes
6
replies
3.0k
views
OMA-browser, the manual script failure
OMA
Orthologs
updated 23 months ago by
Ram
43k • written 9.1 years ago by
natasha.sernova
★ 4.0k
0
votes
2
replies
3.9k
views
Orthomcl-results without co-orthologs and in-paralogs
OMA
bacteria
ortholog
updated 23 months ago by
Ram
43k • written 9.2 years ago by
natasha.sernova
★ 4.0k
4
votes
7
replies
6.4k
views
how to convert NCBI protein ID to corresponding nucleotide sequence
gene
sequence
databases
protein
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
natasha.sernova
★ 4.0k
5
votes
6
replies
2.2k
views
Can I reach NCBI protein sequences with their corresponding NCBI urls?
NCBI
protein
updated 2.0 years ago by
Ram
43k • written 9.2 years ago by
natasha.sernova
★ 4.0k
11
votes
16
replies
4.9k
views
How to copy all fasta-seqs from fasta-files with the seq-lengths between minlen and maxlen
perl
fasta
updated 2.1 years ago by
Ram
43k • written 9.3 years ago by
natasha.sernova
★ 4.0k
7
votes
11
replies
5.6k
views
vcf to MAF to fasta
Galaxy
vcf
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
natasha.sernova
★ 4.0k
0
votes
0
replies
1.6k
views
How To Split *.Hhm_Db Into Separated Hhm-Files?
database
updated 9.7 years ago by
Biostar
20 • written 10.4 years ago by
natasha.sernova
★ 4.0k
3
votes
6
replies
2.4k
views
how to find a particular orthologous gene in a set of eukaryotic genomes
genome
gene
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
natasha.sernova
★ 4.0k
1
vote
4
replies
9.2k
views
GATK: vcf to fasta
gene
updated 2.5 years ago by
Ram
43k • written 9.9 years ago by
natasha.sernova
★ 4.0k
2
votes
6
replies
2.4k
views
each protein with each protein
blast
updated 9.9 years ago by
5heikki
11k • written 9.9 years ago by
natasha.sernova
★ 4.0k
3
votes
10
replies
2.1k
views
array of hashes in perl
sequence
updated 9.9 years ago by
JC
13k • written 9.9 years ago by
natasha.sernova
★ 4.0k
0
votes
4
replies
4.4k
views
how transfer a vcf-file to fasta-format
vcf
updated 2.6 years ago by
Ram
43k • written 9.9 years ago by
natasha.sernova
★ 4.0k
3
votes
1
reply
1.6k
views
Where Can I Find Buildali.Pl?
updated 10.3 years ago by
Biostar
20 • written 10.4 years ago by
natasha.sernova
★ 4.0k
0
votes
2
replies
1.7k
views
Where Can I Find The Detailed Hhr-File Description? Hhsuite User Manual Has Not Helped So Far
updated 10.4 years ago by
Istvan Albert
100k • written 10.4 years ago by
natasha.sernova
★ 4.0k
0
votes
0
replies
1.9k
views
Package Hhsuite And All Hh-Programs Inside.
10.5 years ago by
natasha.sernova
★ 4.0k
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