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36 results • Page
1 of 1
Sort: replies
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7
votes
14
replies
2.9k
views
6 follow
How to find tandem duplications pattern in a DNA sequence
Repeat
updated 21 hours ago by
micah
▴ 30 • written 3.1 years ago by
kumajis
• 0
2
votes
10
replies
1.1k
views
HGVS Nomenclature of Multiple Indels found in Cis
Nomenclature
HGVS
updated 12 hours ago by
Ram
43k • written 5 months ago by
LauferVA
4.2k
0
votes
5
replies
203
views
Why most genes have high padj values
RNA-seq
DEG
updated 10 hours ago by
Ram
43k • written 20 hours ago by
mnx0723
• 0
0
votes
5
replies
324
views
how to treat the replicates while performing WGCNA
clustering
WGCNA
replicates
5 hours ago by
mavy
▴ 10
1
vote
4
replies
201
views
How to find SRA sequences of some fungal whole genome sequences if only Biosample ID is available?
SRA
whole-genome-sequencing
NCBI
updated 7 hours ago by
Ram
43k • written 9 hours ago by
Harshita
• 0
0
votes
4
replies
223
views
GO analysis: p-value range
GO
R
updated 17 hours ago by
Matthias Zepper
4.6k • written 1 day ago by
sooni
▴ 20
2
votes
4
replies
155
views
Filter Genome for Specific Sites
bedtools
updated 7 hours ago by
Ram
43k • written 10 hours ago by
Anita
• 0
0
votes
4
replies
298
views
What marks a De-Novo Genome assembly as FAILED?
nanopore
denovo
illumina
assembly
genome
updated 10 hours ago by
dthorbur
★ 2.0k • written 3 days ago by
Umer
▴ 50
0
votes
3
replies
158
views
GATK Structural Variants Pipeline - Steps
SV
GATK
Variant-Calling
updated 12 hours ago by
Ram
43k • written 17 hours ago by
Bioinformatics_begginner
▴ 20
0
votes
3
replies
187
views
Error in using BioSampleParser tool: subscript out of bounds
R
updated 6 hours ago by
marco.barr
▴ 130 • written 1 day ago by
Mohamed Samir
▴ 20
0
votes
3
replies
305
views
Trimming tool
Trimming
updated 7 hours ago by
Ram
43k • written 3 days ago by
GeneC
• 0
0
votes
3
replies
222
views
seqtk subseq in.fastq list.txt > out.fastq not extracting full sequence from input file
subseq
seqtk
extractionproblem
updated 15 hours ago by
GenoMax
142k • written 1 day ago by
KHURRAM SHAHZAD
• 0
1
vote
3
replies
307
views
Super ehancers
enhancers
updated 11 hours ago by
GenoMax
142k • written 18 days ago by
Oburah
• 0
1
vote
2
replies
149
views
How to find identical sequences in genome fasta file (by Python or any possible program) ?
fasta
updated 10 hours ago by
Ram
43k • written 21 hours ago by
Sony
▴ 10
2
votes
2
replies
307
views
Practical Haplotype Graph v2 not finding correct paths
Pangenome
PHG
graph
12 hours ago by
beantkapoor16
▴ 10
0
votes
2
replies
165
views
How to generate an Upset plot in R to plot the shared variants between cell free DNA samples
r
Upset
9 hours ago by
sainavyav22
• 0
0
votes
2
replies
258
views
How can I calculate the OS of each patient?
overall-survival
9 hours ago by
Pedro
• 0
1
vote
2
replies
158
views
News:
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
BestTalk
PlatformPresentation
offtopic
updated 7 hours ago by
Ram
43k • written 1 day ago by
Dr.
• 0
1
vote
2
replies
119
views
Elbow plot question (scRNA seq data analysis - scanpy tutorial)
scanpy
6 hours ago by
ojaswinipandey
• 0
0
votes
1
reply
80
views
How to hide label in layout file of MCscan (python version)
MCscan
updated 14 hours ago by
GenoMax
142k • written 17 hours ago by
jinyi
• 0
0
votes
1
reply
109
views
GO analysis: Indicate genes corresponding to the pathway
GeneOntoloy
GO
R
updated 14 hours ago by
marco.barr
▴ 130 • written 17 hours ago by
sooni
▴ 20
0
votes
1
reply
122
views
PCA Visualization error in R - arguments imply differing number of rows
SNPs
PCA
GBS
LINUX
r
updated 18 hours ago by
zx8754
11k • written 23 hours ago by
Ali
• 0
0
votes
1
reply
575
views
Illumina methylation EPIC V2 array
ewas
methylation
enrichment
missMethyl
EPIC
updated 13 hours ago by
fu_entomology
▴ 40 • written 8 months ago by
juliviglino
• 0
1
vote
1
reply
79
views
Generating Group/Cluster Lists from fastq files
Sequencing
RNA-seq
DNA-Seq
updated 11 hours ago by
GenoMax
142k • written 11 hours ago by
niruf
• 0
0
votes
1
reply
106
views
Functional enrichment analysis for unique gene IDs
RNA-SEQ
updated 21 hours ago by
ATpoint
82k • written 23 hours ago by
Pegasus
▴ 100
0
votes
1
reply
87
views
Kraken2 Custom Database non-deterministic results
Metagenomics
kraken2
updated 7 hours ago by
GenoMax
142k • written 8 hours ago by
Bjorn
• 0
0
votes
0
replies
76
views
transcriptome annotation
annotation
trinity
transcriptome
updated 12 hours ago by
Ram
43k • written 19 hours ago by
Asim Bin Arshad
• 0
0
votes
0
replies
61
views
Is it possible to keep gene_id and gene_name columns using Seurat::Read10X?
Seurat
single-cell
scRNA-seq
updated 10 hours ago by
Ram
43k • written 16 hours ago by
ev97
▴ 20
0
votes
0
replies
58
views
vcf phasing
beagle
WhatsHap
phasing
12 hours ago by
safeassli
▴ 10
2
votes
0
replies
73
views
Herald:
The Biostar Herald for Monday, May 20, 2024
herald
12 hours ago by
Biostar
2.8k
0
votes
0
replies
10
views
CreateSeuratObject taking very long
seurat
19 minutes ago by
eae6d2e7
• 0
0
votes
0
replies
50
views
News:
Online course: Network analysis in Systems Biology with R/Bioconductor
Bioconductor
Systems-Biology
Network-Analysis
R
updated 7 hours ago by
Ram
43k • written 11 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
97
views
How to deal with possibly important predictors omitted during the building of an OLS multivariant linear regression model?
multivariant-linear-regression
updated 7 hours ago by
Ram
43k • written 18 hours ago by
JorgeVallejo
▴ 20
0
votes
0
replies
14
views
Multi-ploid data in ANGSD and NGSadmix
ancestry
diploid
haploid
admixture
1 hour ago by
Christopher
• 0
0
votes
0
replies
109
views
problems in installing rDock
rDock
updated 7 hours ago by
Ram
43k • written 1 day ago by
Rodolfo Adrián
• 0
0
votes
0
replies
61
views
ENCORI or starBase : ceRNA data retrieval using Web API and curl
ceRNA
ENCORI
curl
microRNA
starBase
18 hours ago by
V_Vibes
• 0
36 results • Page
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Recent Votes
A: Where to find PCR duplicate reads in bam file?
A: Generate Vcf.Gz File And Its Index File Vcf.Gz.Tbi
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
A: Bcftools merge taking too much time and producing large file
Answer: Kraken2 database
A: Why gene expression data should be log2 transformed?
Answer: Filter Genome for Specific Sites
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Recent Replies
Comment: how to treat the replicates while performing WGCNA
by
mavy
▴ 10
Hello I have a quick question, I did as you said , and further added the traits, found the correlation among the modules and the traits us…
Comment: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
ojaswinipandey
• 0
Thank you so much Dave.
Answer: Elbow plot question (scRNA seq data analysis - scanpy tutorial)
by
Dave Carlson
★ 1.7k
The y axis represents the proportion of the total variance explained by each principal component. It's negative because the value (between…
Comment: Error in using BioSampleParser tool: subscript out of bounds
by
marco.barr
▴ 130
Hi Mohamed, I also thought the same thing but we run the risk of inserting other errors perhaps by modifying the function. I tried but I ha…
Comment: Trimming tool
by
Ram
43k
Please do a few simple Google searches before asking others for help.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
by
Ram
43k
This post does not fit the theme of this forum.
Comment: ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
by
Ram
43k
Hi, Congratulations but this is not LinkedIn, we are not a place to showcase your professional accomplishments. This does not fall under t…
Comment: Kraken2 Custom Database non-deterministic results
by
GenoMax
142k
Many (most?) programs related to NGS data analysis produce non-deterministic output (unless they explicitly offer an option to produce dete…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
For those samples it appears that raw data was not submitted. Just an assembly. $ esearch -db biosample -query SAMN08009548 | elink -…
Comment: How can I calculate the OS of each patient?
by
Pedro
• 0
**I have already tried this code. listSamples with HNSC cancer and smokers. I need at least one supporting material to find out the survi…
Comment: Filter Genome for Specific Sites
by
Anita
• 0
Great, thank you!
Comment: Filter Genome for Specific Sites
by
Anita
• 0
This is unhelpful and doesn't answer my question.
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
It seems that the authors in this paper have used paired-end sequences only for their analysis, and for that, they would also have used the…
Comment: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
Harshita
• 0
Thank you so much for helping me out in this! I have used most of the sequences that are found in this table. But, some samples like the…
Answer: How to find SRA sequences of some fungal whole genome sequences if only Biosampl
by
GenoMax
142k
Looks like the samples are from this project: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320483&o=acc_s%3Aa This table has the SR…
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