2
votes
2
replies
193
views
0
votes
1
reply
189
views
0
votes
1
reply
185
views
2
votes
2
replies
184
views
1
vote
0
replies
183
views
18 hours ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
177
views
0
votes
1
reply
175
views
0
votes
0
replies
175
views
0
votes
1
reply
175
views
updated 2 days ago by
Jack Tierney
▴
360
•
written 2 days ago by
Sudip
•
0
0
votes
0
replies
171
views
0
votes
1
reply
168
views
updated 1 day ago by
Adam
▴
30
•
written 2 days ago by
Ahiad Chen Zion
•
0
0
votes
1
reply
166
views
0
votes
1
reply
163
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
Petchimuthu
•
0
1
vote
1
reply
161
views
2 days ago by
heelpPlease
•
0
0
votes
1
reply
161
views
1
vote
0
replies
157
views
0
votes
1
reply
157
views
1
vote
2
replies
154
views
updated 20 hours ago by
ATpoint
82k
•
written 1 day ago by
poordumbsillyidiot
•
0
0
votes
0
replies
153
views
0
votes
2
replies
151
views
0
votes
4
replies
149
views
updated 13 hours ago by
jared.andrews07
★
16k
•
written 14 hours ago by
JH
•
0
0
votes
0
replies
141
views
5 days ago by
Chris
▴
260
0
votes
1
reply
140
views
0
votes
0
replies
137
views
1
vote
3
replies
131
views
updated 8 hours ago by
jared.andrews07
★
16k
•
written 11 hours ago by
yvonneh
▴
10
0
votes
1
reply
131
views
4
votes
0
replies
129
views
0
votes
1
reply
128
views
0
votes
0
replies
126
views
0
votes
0
replies
125
views
3 days ago by
Jacob
•
0
0
votes
0
replies
124
views
0
votes
0
replies
123
views
0
votes
0
replies
122
views
0
votes
0
replies
121
views
3 days ago by
Lluís R.
★
1.2k
0
votes
0
replies
121
views
0
votes
1
reply
121
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
ernestine.kubi
•
0
0
votes
0
replies
120
views
updated 3 days ago by
dariober
14k
•
written 4 days ago by
rene.j.erhardt
▴
20
0
votes
0
replies
120
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
carlopecoraro2
★
2.5k
0
votes
2
replies
119
views
10 hours ago by
Chen
•
0
0
votes
0
replies
116
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
Alexandros
•
0
1
vote
1
reply
111
views
updated 13 hours ago by
jared.andrews07
★
16k
•
written 18 hours ago by
Oburah
•
0
1
vote
3
replies
110
views
updated 1 hour ago by
Alex Reynolds
35k
•
written 8 hours ago by
SJP
•
0
0
votes
0
replies
110
views
1
vote
1
reply
109
views
0
votes
0
replies
109
views
3 days ago by
carlopecoraro2
★
2.5k
0
votes
0
replies
106
views
1
vote
1
reply
106
views
updated 12 hours ago by
Ram
43k
•
written 19 hours ago by
marco.barr
▴
90
1
vote
1
reply
106
views
0
votes
1
reply
104
views
0
votes
1
reply
102
views
Recent Votes
Recent Locations •
All
Australia, 1 minute ago
Australia, 2 minutes ago
India, 2 minutes ago
Pakistan, 2 minutes ago
India, 5 minutes ago
United States, 7 minutes ago
Canada, 8 minutes ago
Recent Awards •
All
Popular Question to
kuttibiotech2009
▴
30
Popular Question to
analyst
▴
30
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
Sasha
▴
840
Popular Question to
Buffo
★
2.4k
Popular Question to
yvonnehhe
•
0
Popular Question to
curious
▴
750
Recent Replies
Comment: HOMER on AWS
by
clairechung112
•
0
Hi. I guess it is solved by now, but as I did not find the answer immediately online, here is the answer I posted on a relevant question: h…
Answer: homer not configured properly
by
clairechung112
•
0
A late reply, but I just solved exactly the same error upon a request in the team. Please see if it helps in case anyone meets the same err…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴
390
Was the spike-in a commercial product, e.g., from Zymo? Can you provide more information about what cells or DNA was spiked into your samp…
Comment: Bedtools merge minimum overlap?
by
Alex Reynolds
35k
Note that, in place of `sort-bed - | uniq -`, you can pass the `--unique` option to `sort-bed`.
The input is not strictly a BED6 file, but…
Comment: Post-imputation plot
by
LChart
3.9k
Imputation takes what? A day or two of compute time? Just re-do it.
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴
40
Thanks. Really appreciate your help with this. This site is such a great resource.
The methods aren't totally clear on how they're gettin…
Comment: How to access TCGA samples that were treated with a specific drug?
by
GenoMax
142k
It is possible that these drugs may not have been directly used in TCGA. Authors could have looked for mutations known to be acted on by th…
Comment: Does comparing two different groups to a common third group introduce bias in th
by
Qroid
▴
40
Are you thinking about a specific scenario? If so, can you provide more info? I think the basic answer is that, yes, your choice of group C…
Answer: Bedtools merge minimum overlap?
by
harold.smith.tarheel
★
4.9k
Bedtools [intersect][1] allows you to specify the fraction of overlap between two BED (or BAM) files using the F/f/r flags. You could split…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴
40
Sorry, I should have been more specific. By "that list" I mean what's populated in the Therapeutic Agents tab when no filters are applied. …
Comment: Bedtools merge minimum overlap?
by
bk11
★
2.4k
Not sure if you wanting to do like this-
cat your_input.bed
chr1 100 200 region1 +
chr1 180 300 regi…
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
If you know what the boundaries of your construct look like then trim the left-end of the read using the tag on that end (`ktrim=l`). Then …
Comment: Extract gRNA sequence using cutadapt
by
gernophil
▴
80
> Not every read in your data is going to match a guide.
That is also true for sure. Let me clarify what I mean. For every read you should…
Answer: VG : No reference-sense paths available in the graph; falling back to generic pa
by
anovak
▴
120
If your GFA has paths in it that are P lines with names that don't include a sample name, contig name, and separators, then those are what …
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
> if you look at a fastq file you should be able to tell for every read definitely, if it has a perfect match for a guide in it and what gu…
Traffic: 1655 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6