Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : today
all time
today
this week
this month
this year
44 results • Page
1 of 1
Sort: Rank
Rank
Views
Votes
Replies
0
votes
1
reply
57
views
POSSUM not working due to incompatible pssm file
fasta
pse-pssm
pssm
POSSUM
updated 1 hour ago by
Ram
43k • written 4 hours ago by
rianna.collins
• 0
0
votes
0
replies
41
views
Alternatives to metanalyisis. P integration. Horiztonal integration RNA-seq
rna-seq
6 hours ago by
Edmond
• 0
0
votes
0
replies
45
views
What open-source tools can determine the coverage/completion of a pathway based on EC numbers?
metagenomics
metacyc
enzyme
pathway
genomics
7 hours ago by
O.rka
▴ 710
0
votes
1
reply
87
views
after selecting specific GO terms to plot, cneplot is not showing any color for genes, GO terms and only showing lines without nodes.
cneplot
updated 2 hours ago by
Ram
43k • written 7 hours ago by
Dr Huma Naz
• 0
2
votes
1
reply
112
views
p-value in CIBERSORT
CIBERSORT
p-value
updated 9 hours ago by
Ram
43k • written 15 hours ago by
michelafrancesconi9
▴ 20
0
votes
3
replies
151
views
Telescope issue
Telescope
RNA-seq
updated 3 hours ago by
GenoMax
141k • written 12 hours ago by
eleven11
• 0
0
votes
0
replies
63
views
How to find overlap of clusters in two seurat porject
clustering
seurat
updated 9 hours ago by
Ram
43k • written 12 hours ago by
J
• 0
5
votes
6
replies
370
views
Programmatically retrieving positions of protein active site residues
Uniprot
PDB
Proteins
updated 13 hours ago by
me
▴ 760 • written 1 day ago by
Mariana
▴ 40
0
votes
0
replies
67
views
Defined objects of type "S4" error in single cell analysis
Seurat
single-cell
DoubletFinder
single-nuclei
SeuratObject
14 hours ago by
sarphilsar
• 0
0
votes
1
reply
128
views
Adjust pvalue in R with different approach give me all different outcome
statistics
R
p-value
updated 9 hours ago by
Ram
43k • written 14 hours ago by
Jonathan Yoou
▴ 60
0
votes
1
reply
130
views
Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x64-linux
blast
pssm
updated 9 hours ago by
Ram
43k • written 14 hours ago by
Nafi
• 0
0
votes
3
replies
159
views
What does 'bundle_uuid' refer to in this metadata sheet?
SRA
illumina
GEO
metadata
updated 9 hours ago by
GenoMax
141k • written 14 hours ago by
jeffrey.maurer.informatics
• 0
0
votes
2
replies
148
views
ERROR When Using Ensembl Plants Biomart Wget API
biomart
plant
ensembl
updated 15 hours ago by
GenoMax
141k • written 21 hours ago by
Dora
▴ 10
0
votes
0
replies
90
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 15 hours ago by
Ram
43k • written 16 hours ago by
Chakri
• 0
0
votes
0
replies
74
views
RNA editing sites based on DNA seq and RNA seq
RNA-editing
updated 14 hours ago by
Ram
43k • written 16 hours ago by
Ahiad Chen Zion
• 0
0
votes
4
replies
192
views
Introduce SNPs on FASTA
simulation
snps
haplotypes
pharmacogenetics
updated 17 hours ago by
Michael
54k • written 19 hours ago by
Riccardo
▴ 10
0
votes
0
replies
70
views
barcode of TCR-sequencing
barcode
17 hours ago by
yueli7
▴ 250
0
votes
0
replies
74
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 17 hours ago by
Ram
43k • written 18 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
71
views
Somatic variant calling with Mutect2 using 2 matched-normals for one sample
cancer
mutect
variant-calling
GATK
somatic-variants
updated 16 hours ago by
Ram
43k • written 19 hours ago by
Alexandros
• 0
0
votes
1
reply
102
views
unable to get feature count results
featureCounts
updated 14 hours ago by
Ram
43k • written 19 hours ago by
Ravita
• 0
0
votes
0
replies
70
views
Subsetting and merging back Seurat Object brings different results
Seurat
19 hours ago by
Bine
▴ 60
0
votes
3
replies
192
views
KEGG Pathways
r
RNA-seq
updated 12 hours ago by
Ram
43k • written 20 hours ago by
Sudip
• 0
4
votes
6
replies
3.8k
views
Taking the difference of two VCFs (or removing singletons)
genome
sequencing
singleton
SNP
filter
updated 20 hours ago by
Andres
▴ 20 • written 9.6 years ago by
hermathena
▴ 40
0
votes
0
replies
74
views
Seurat object reductions (PCA, UMAP,..) after subsetting data
Seurat
20 hours ago by
Bine
▴ 60
0
votes
1
reply
222
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
21 hours ago by
David Langenberger
11k
0
votes
0
replies
75
views
Force PLINK2 to neglect chrX as the sex chromosome
PLINK2
21 hours ago by
8armed
• 0
0
votes
1
reply
123
views
Deseq2
Deseq2
updated 22 hours ago by
Jack Tierney
▴ 360 • written 22 hours ago by
Sudip
• 0
1
vote
1
reply
155
views
Polishing genome assembly
polishing
Nanopore
PacBio
updated 22 hours ago by
Michael
54k • written 1 day ago by
Lissa Cruz Saavedra
• 0
5
votes
3
replies
196
views
6 follow
Integrate transcriptomic data and proteomics data.
OMICS
updated 22 hours ago by
Lluís R.
★ 1.2k • written 1 day ago by
이민경[학생](대학원 융합의과학과)
• 0
2
votes
2
replies
128
views
MA plot of shrunken fold change
MA-plot
Deseq2
updated 23 hours ago by
ATpoint
82k • written 23 hours ago by
Sudip
• 0
1
vote
2
replies
161
views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
Arabidopsis-thaliana
gtf
reference-genome
updated 14 hours ago by
Ram
43k • written 23 hours ago by
Ravita
• 0
0
votes
0
replies
67
views
Gene Specific coverage from WGS data
linux
WGS
Bioinformatics
SARS
CoV2
23 hours ago by
Adyasha
• 0
0
votes
3
replies
215
views
Post-imputation plot
michigan-imputation-server
quality-control
updated 8 hours ago by
LChart
3.9k • written 1 day ago by
kl
▴ 10
0
votes
3
replies
224
views
Landmark gene selection in L1000.
L1000
landmark-gene
cmap
updated 18 hours ago by
GenoMax
141k • written 1 day ago by
kim
• 0
3
votes
2
replies
311
views
Extract protein sequence
fasta
alignment
blast
11 hours ago by
anna
▴ 20
0
votes
4
replies
206
views
Genbank File Format
gbkformat
22 hours ago by
alenew.am
• 0
0
votes
2
replies
170
views
RNAseq one control two conditions, shared and exclusive genes
conditions
RNAseq
multiple
Rstudio
14 hours ago by
matteo.levorato
• 0
37
votes
24
replies
1.7k
views
10 follow
NGS forensics: how to know if data is fabricated
fastq
STAR
NGS
Illumina
updated 20 hours ago by
i.sudbery
19k • written 3 days ago by
noodle
▴ 580
0
votes
8
replies
378
views
What does it mean single base resolution in sequencing?
SNP
sequencing
updated 10 hours ago by
LauferVA
4.2k • written 2 days ago by
jinyu
▴ 10
0
votes
3
replies
364
views
why renaming Idents in Seurat object doesn't work?
Seurat
RenameIdents
R
15 hours ago by
Assa Yeroslaviz
★ 1.8k
1
vote
1
reply
156
views
Including plasmid in alignment
Bacteria
Transcriptomics
BOWTIE2
STAR
9 hours ago by
heelpPlease
• 0
2
votes
4
replies
265
views
from row count to tpm
tpm
row-count
normalization
updated 14 hours ago by
Ram
43k • written 8 days ago by
michelafrancesconi9
▴ 20
1
vote
8
replies
417
views
Downsampling fastq file
downsample
fastq
13 hours ago by
marco.barr
▴ 80
0
votes
10
replies
467
views
Low mapping rate with Salmon
RNA-seq
Salmon
Quantification
updated 20 hours ago by
i.sudbery
19k • written 8 days ago by
Patadu94
• 0
44 results • Page
1 of 1
Recent Votes
Answer: Discrepancy between Log2(x) and Log2(x+1) regarding Log2FC
Answer: Verify if all the components of a pathway are present in a genomes
Answer: p-value in CIBERSORT
Answer: Can I have multiple active GDC download tokens?
Answer: Can I have multiple active GDC download tokens?
Comment: Can I have multiple active GDC download tokens?
Comment: Programmatically retrieving positions of protein active site residues
Recent Locations •
All
Belgium,
1 minute ago
India,
10 minutes ago
Norway,
11 minutes ago
Indonesia,
16 minutes ago
Japan,
27 minutes ago
Belgium,
32 minutes ago
Adelaide,
34 minutes ago
Recent Awards •
All
Popular Question
to
mathavanbioinfo
▴ 90
Popular Question
to
Jautis
▴ 530
Popular Question
to
Jonathan Yoou
▴ 60
Popular Question
to
Chris
▴ 260
Commentator
to
Lluís R.
★ 1.2k
Popular Question
to
miles.anderson
▴ 10
Popular Question
to
kamhamea
• 0
Recent Replies
Comment: POSSUM not working due to incompatible pssm file
by
Ram
43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Comment: after selecting specific GO terms to plot, cneplot is not showing any color for
by
Ram
43k
Please use the formatting bar (especially the `code` option) to present your post better. You can use backticks for inline code (\`text\` b…
Comment: Telescope issue
by
GenoMax
141k
Looks like there is a tab missing between the sequence and the quality string.
Comment: Post-imputation plot
by
LChart
3.9k
I would pull out the variants with panel_freq ~ 1 - upload_freq and min(panel_freq, upload_freq) < 0.4. I would check if these are G/C or A…
Comment: Telescope issue
by
eleven11
• 0
Hello the output is A01940:33:GW2208142379th:3:1317:24126:3505 355 chr14 16651125 0 150M = 17034150 122900 GCTAACAGAGTTGAACCTTTCTATTG…
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
GenoMax
141k
Looking at the [code here][1] `bundle_uuid` seems to be related to the submissions to HCA. Samples that ran on multiple lanes seem to have …
Comment: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
this is very true and increasingly true as time goes forward. thanks for supplementing this post with your own :-)
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
jeffrey.maurer.informatics
• 0
Thank you, but I've already checked out that site to see if I was missing anything and I don't see any answers to my questions there.
Answer: p-value in CIBERSORT
by
Aspire
▴ 320
You have not explicitly specified the number of permutations (which are used to calculate the p-value). The default value of the permutatio…
Comment: Telescope issue
by
GenoMax
141k
> CIGAR and query sequence are of different length [W::sam_read1] Parse error at line 9954941 Problem appears to be at that line. Can you …
Comment: KEGG Pathways
by
Ram
43k
Give us as much detail as you can. What error does it give you?
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
GenoMax
141k
SRA Run Selector shows a better view of the metadata: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA761679&o=acc_s%3Aa
Comment: Adjust pvalue in R with different approach give me all different outcome
by
Aspire
▴ 320
- `p.adjust()` is supposed to receive a **numeric vector of p-values**, not a matrix. - It makes no sense to "adjust" just one p-value, …
Comment: Downsampling fastq file
by
marco.barr
▴ 80
I understood where the problem lies. I discussed with my wet lab colleagues (this is part of a bioinformatician's job...) and by showing th…
Comment: Programmatically retrieving positions of protein active site residues
by
me
▴ 760
This question fits in nicely with the [SIB Swiss Institute of Bioinformatics course on Enzyme information in UniProt][1] [1]: https://w…
Traffic: 1631 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6