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187 results • Page
4 of 4
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117
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
1 day ago by
belloy
• 0
0
votes
0
replies
114
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
3 days ago by
DGTool
• 0
0
votes
0
replies
113
views
How to implement an IGV to streamlit app?
python
streamlit
igv
2 days ago by
avigail.shnaider
• 0
0
votes
0
replies
112
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
3 days ago by
Christopher
• 0
0
votes
2
replies
110
views
Phasing a mixture of two individuals' DNA with long reads
long-reads
phasing
7 hours ago by
njornet
▴ 20
0
votes
0
replies
110
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 2 days ago by
Ram
43k • written 2 days ago by
sidrah.maryam
▴ 50
0
votes
0
replies
109
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 2 days ago by
Pierre Lindenbaum
161k • written 2 days ago by
sarumonsus
• 0
0
votes
2
replies
108
views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect
scRNA
seurat
integration
updated 2 hours ago by
Adam
▴ 30 • written 9 hours ago by
Darya
• 0
0
votes
0
replies
107
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 6 days ago by
Ram
43k • written 6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
107
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
3 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
106
views
Cox Model with interaction item interpretation
Cox
2 days ago by
Bine
▴ 60
0
votes
2
replies
102
views
Error in plotting PCA plot in seurat
PCA
single-cell
seurat
scRNA
RNA
updated 1 hour ago by
Adam
▴ 30 • written 11 hours ago by
Sumeet
• 0
0
votes
0
replies
102
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
1 day ago by
Scott McKay
▴ 30
0
votes
0
replies
101
views
Use of annotation of integrated Seurat object in single sample
Seurat
6 days ago by
Bine
▴ 60
0
votes
0
replies
101
views
Tassel 5 GBS: GBSSeqToTagDBPlugin producing empty database
GBS
Tassel5
6 days ago by
meck
• 0
0
votes
0
replies
100
views
Cellphonedb results
cpdb
visulization
cellphonedb
1 day ago by
piotto
▴ 20
0
votes
0
replies
100
views
vdjtools
vdjtools
2 days ago by
yueli7
▴ 250
0
votes
0
replies
99
views
Combining Methylation Microarray data from different platforms
Microarray
DNA
EPIC
450K
Methylation
6 days ago by
James
▴ 10
0
votes
0
replies
97
views
Normalizing AMR gene count data
abundance
RGI
updated 2 days ago by
Ram
43k • written 2 days ago by
arshad1292
▴ 100
0
votes
0
replies
97
views
Successfully identified and Masked rpeats using RM. What Next?
sequence
annotation
repeatmasker
illumina
assembly
6 days ago by
Vijith
▴ 30
0
votes
0
replies
93
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
2 days ago by
Javier
• 0
0
votes
0
replies
92
views
Imputation of missing genotypes
panel
beagle
imputation
1 day ago by
analyst
▴ 50
0
votes
1
reply
91
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 3 hours ago by
Bastien Hervé
5.3k • written 18 hours ago by
sooni
▴ 20
0
votes
0
replies
86
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
1 day ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
81
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
12 hours ago by
analyst
▴ 50
0
votes
0
replies
74
views
Chance for trained without experience
bio
updated 7 hours ago by
ATpoint
82k • written 7 hours ago by
shehab
• 0
0
votes
0
replies
69
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
9 hours ago by
Winter
• 0
0
votes
0
replies
68
views
monocle 3-- Could not get node in small cluster
monocle3
21 hours ago by
synat.keam
▴ 100
0
votes
2
replies
63
views
How/where can I get fungal mitogenome data for analysis?
fungal
mitogenome
updated 3 hours ago by
GenoMax
142k • written 3 hours ago by
madders73
• 0
0
votes
0
replies
63
views
meffil.snp.concordance
meffil
methylation
snp_concordance
17 hours ago by
kyj222637
• 0
0
votes
0
replies
56
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
8 hours ago by
Omics data mining
▴ 260
0
votes
0
replies
50
views
Blog:
Overview of Nanopore Sequencing
biotech
12 hours ago by
usa.cd.genomics
• 0
0
votes
0
replies
50
views
Generating .bed file and .map file for polyploid vcf file through plink
bed
polyploid
map
plink
12 hours ago by
analyst
▴ 50
0
votes
0
replies
46
views
Blog:
Introduction to The Complete Sequence of a Human Genome
biotech
12 hours ago by
usa.cd.genomics
• 0
0
votes
0
replies
24
views
News:
Online course: Introduction to Deep Learning
DeepLearning
Python
ConvolutionalNeuralNetwork
MachineLearning
2 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
23
views
Obtaining Infinium Methylation450K manifest for hg38
TCGA
hg38
methylation
Illumina
1 hour ago by
elisheva
▴ 120
0
votes
0
replies
14
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway.
denvo
1 hour ago by
mathavanbioinfo
▴ 90
187 results • Page
4 of 4
Recent Votes
A: How to append the cell barcode and UMI information to the fastq header in paired
Answer: Decoding MM and ML tags in .SAM file
C: salmon quantification vs. star mapping
Answer: TFs and Gene databases
Answer: How can I analyze normalized expression data?
Comment: agilent human all exon sureselct v7 bed file
Answer: Best way to compare two samples in a VCF file
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Recent Replies
Comment: RNA seq analysis
by
ATpoint
82k
It makes absolutely no sense to conduct such an analysis. I strongly discourage you to even start with it. Results will be utterly nonsense…
Comment: Differentail gene expression results
by
swbarnes2
14k
Cross-posted: https://support.bioconductor.org/p/9158194/
Answer: Seurat V5 integration
by
Bastien Hervé
5.3k
It will depend on your context and question. I guess you will want to compare gene expression between your conditions within cell types …
Answer: Error in plotting PCA plot in seurat
by
Adam
▴ 30
You get this error when you try to compare two data frames that have different dimensions. Try using the traceback() command to figure out …
Comment: Applying the metacell2 algorithm using python
by
Wayne
★ 2.0k
Sorry, this was supposed to be a comment appended to the chain above. I didn't mean to post as an answer.
Comment: Exploring Diet Effects in Single-Cell RNA Sequencing
by
Adam
▴ 30
> when I looked at the expression of aging marker genes, I noticed that diets sequenced in the same batch appeared more similar. How simil…
Answer: How to compare compare two Sam files to check mapping
by
DavidStreid
▴ 90
Curious if others have also benefited from Picard's [CompareSAMs][1] tool. Seems to do exactly what Madhu has requested. If the headers …
Answer: How/where can I get fungal mitogenome data for analysis?
by
alex.zaccaron
▴ 410
The best repository is probably NCBI Organelle Resources. You can search by taxonomy and download their mt genomes. Check it out for fungi…
Answer: How/where can I get fungal mitogenome data for analysis?
by
GenoMax
142k
Good place to start looking: https://www.ncbi.nlm.nih.gov/genome/organelle/ Mitochondrial genomes may also be included in full genomes so …
Comment: Correlating Bulk Differential Expression with quantitative
by
Nicholas
• 0
Thank you! I will give it a shot
Answer: How can I analyze normalized expression data?
by
Bastien Hervé
5.3k
This has been issued a dozen times before. Have a look at Limma package. https://support.bioconductor.org/p/126817/ https://support.bioco…
Comment: Error in plotting PCA plot in seurat
by
Bastien Hervé
5.3k
Without your code, it is impossible to make any statement. Please provide the code generating that issue. By googling, here is a [similar …
Comment: A question about reference genome for creating the consensus sequence
by
me
• 0
Hi, thanks for your information. I am a bit confused now. Does this mean the cram file already contained reference genome information? I in…
Comment: PseudobulkExpression.Seurat error
by
Bastien Hervé
5.3k
> None of the requested assays are present in the object Does the assay `originalexp` exist in your object `seurat_from_cds` ?
Comment: Question regarding WGCNA
by
deepak
• 0
Thank for the reply. I am running this code: # set a set of soft-thresholding powers powers = c(c(1:20), seq(from = 22, to=30, by=2)) # Ca…
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