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122,232 results • Page
15 of 2445
Sort: Rank
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0
votes
0
replies
1.0k
views
Job:
Postdoctoral Researcher (DFG‑funded): AI & Ageing Biology
bioinformatics
longevity
aging
AI
open-source
4 months ago by
Anton
▴ 100
1
vote
3
replies
797
views
ONT Methylation calling
MODIFICATIONS
NANOPORE
ONT
EPIGENETIC
SEQUENCING
updated 4 months ago by
colindaven
8.1k • written 4 months ago by
Franci
• 0
1
vote
3
replies
1.1k
views
picard MarkDuplicates READ_PAIRS_EXAMINED much lower than the number of read pairs successfully mapped by STAR
STAR
removal
RNA-seq
picard
duplicate
updated 3 months ago by
GenoMax
154k • written 4 months ago by
maria
• 0
1
vote
6
replies
3.7k
views
Which threshold to be put in the MAPQ when doing mpileup of BCF tools on a STAR-generated BAM file ?
RNAseq
STAR
updated 4 months ago by
Titus
▴ 910 • written 3.0 years ago by
mohsamir2016
▴ 30
1
vote
1
reply
742
views
Mendelian Randomization, Liftover
Mendelian-Randomization
Liftover
Genetics
updated 4 months ago by
gianmarcoabbadessa
• 0 • written 14 months ago by
lag
▴ 10
3
votes
4
replies
981
views
Identifying primers in rna-seq data
cutadapt
transcriptomics
fastqc
rna-seq
primers
updated 4 months ago by
ATpoint
90k • written 4 months ago by
mtsrn
• 0
0
votes
6
replies
875
views
Plant transcriptome analysis and annotation
plants
sRNA-Seq
adnnotation
analysis
expression
4 months ago by
martta95
▴ 10
1
vote
1
reply
557
views
Is Dorado, nanopolish, and xpore compatible with each other?
nanopolish
ONT
Dorado
samtools
xPore
updated 4 months ago by
GenoMax
154k • written 4 months ago by
ward.alafef
• 0
1
vote
2
replies
763
views
Average Nucleotide Identity for bins
ANI
bin
data
shotgun
4 months ago by
shevch2009
▴ 20
0
votes
0
replies
892
views
News:
Introduction to Python for Biologists (IPYB01)
Python
updated 4 months ago by
GenoMax
154k • written 4 months ago by
oliverhooker
▴ 110
3
votes
0
replies
566
views
Tool:
CATS: reference-free and reference-based transcriptome assembly quality assessment
tool
rna-seq
transcriptomics
transcriptome
4 months ago by
Kristian
▴ 30
0
votes
1
reply
432
views
Systematic review and Metanalysis
and
review
Systematic
Metanalysis
updated 4 months ago by
Basti
★ 2.1k • written 4 months ago by
Sara
• 0
0
votes
0
replies
472
views
Novel Junctions from SJ.out.tab
junctions
RStudio
novel
STAR
4 months ago by
SpliceAndScript
• 0
0
votes
0
replies
481
views
Getting wrong scissor results while integrating bulk and single cell data
bulk
intrgration
single
scissor
cell
TNBC
4 months ago by
TNF_alpha
• 0
13
votes
14
replies
64k
views
11 follow
Tools to view fastq file
fastq
updated 4 months ago by
GenoMax
154k • written 9.6 years ago by
Roden Luo
▴ 40
3
votes
4
replies
1.0k
views
how extract CpG methylation calls from nanopore long sequencing bam file ?
methylation
4 months ago by
reziyamaimaiti0331
• 0
0
votes
0
replies
872
views
News:
Online Course: Phylogenomics – 1–5 December
Phylogenomics
DivergenceTimeEstimation
PhylogeneticInference
4 months ago by
Physalia-courses
★ 2.7k
8
votes
5
replies
1.0k
views
How do I generate synthetic 16S RNA gene sequences?
16S
sequence
rRNA
Infernal
augmentation
data
oversampling
cmemit
updated 3 months ago by
shelkmike
★ 1.8k • written 4 months ago by
Max Sikolenko
▴ 80
0
votes
1
reply
675
views
Minimap2 Output
with
Singletons
Interleaved
Minimap2
updated 4 months ago by
Istvan Albert
103k • written 4 months ago by
Jon
• 0
0
votes
1
reply
510
views
Liftover from mm10 to CAST/PWK – Very Low Mapping Rate & Missing Chain File
Liftover
updated 4 months ago by
GenoMax
154k • written 4 months ago by
daffodil
▴ 10
14
votes
10
replies
1.6k
views
Does edgeR supports random effects?
RNASeq
voom
randomeffects
edgeR
limma
4 months ago by
406339165
▴ 10
1
vote
3
replies
622
views
Intro + Question
Internship
Contribution
updated 4 months ago by
Pierre Lindenbaum
166k • written 4 months ago by
akshitabadrinath
• 0
2
votes
3
replies
706
views
New to Bioinformatics, Phage genome investigation
prostT5
genetics
phages
bacteriophage
sphae
updated 4 months ago by
Michael
56k • written 4 months ago by
Hanhan2000
▴ 10
1
vote
2
replies
549
views
Issues for Purchasing The Biostar Handbook – Professional Edition
Biostar
handbook
4 months ago by
Srijan
• 0
1
vote
4
replies
886
views
STAR aligned BAM files
genome_aligned
STAR
BAM
files
transcripts
updated 4 months ago by
Ram
45k • written 4 months ago by
rajdeepboral00
▴ 70
0
votes
0
replies
607
views
Statistical comparison of chr8 amplifications in matched primary vs metastatic WGS samples using log2 CN data
statistics
copy-number
cnvkit
updated 4 months ago by
Ram
45k • written 4 months ago by
Dalal
• 0
1
vote
1
reply
458
views
undefined chro name in vcf header
UnplacedContigs
Header
vcf
RandomContigs
4 months ago by
Mahdi&Christ
▴ 20
4
votes
2
replies
640
views
Fixing MGI Sequence Headers - FASTQ Format
fastq
mgi
4 months ago by
joe_genome
▴ 70
0
votes
1
reply
402
views
how extract CpG methylatiuon calls from nanopore long sequencing bam file ?
methylation
updated 4 months ago by
Ram
45k • written 4 months ago by
reziyamaimaiti0331
• 0
2
votes
4
replies
2.3k
views
Draw a genome map with CGView server?
assembly
genome map
CGView
updated 4 months ago by
Max Sikolenko
▴ 80 • written 6.5 years ago by
El Niño
▴ 10
0
votes
1
reply
881
views
The branch point is not labelled as expected
monocle
updated 4 months ago by
wschen97
• 0 • written 2.3 years ago by
Lin
• 0
11
votes
11
replies
15k
views
8 follow
Significance of the term "tile" in sequencing?
genomics
updated 4 months ago by
Christopher
▴ 10 • written 4.7 years ago by
joe_genome
▴ 70
2
votes
2
replies
581
views
chromosome ideogram
chromosome
updated 4 months ago by
cmdcolin
★ 4.4k • written 4 months ago by
zhangmyharper
▴ 10
1
vote
2
replies
732
views
bin reassembly question
data
metawrap
assembly
shotgun
updated 4 months ago by
Mensur Dlakic
★ 30k • written 4 months ago by
shevch2009
▴ 20
3
votes
5
replies
809
views
What is the best way to handle "?" in the 7th column (strand) of GTF files?
fasta
STAR
ENSEMBL
GTF
RefSeq
updated 4 months ago by
GenoMax
154k • written 4 months ago by
ki
• 0
0
votes
0
replies
800
views
News:
Workshop: Virtual RNA-seq Analysis, July 29–31
RNASeq
workshop
UConn
4 months ago by
zsc25001
▴ 10
1
vote
2
replies
677
views
lifting over mitochondrial SNPs between reference genomes
bcftools
liftover
hg19
picard
VCF
updated 4 months ago by
Jeremy Leipzig
23k • written 4 months ago by
112233
• 0
0
votes
3
replies
760
views
Merging segment CNV files
CNV
updated 4 months ago by
Ram
45k • written 4 months ago by
avelarbio46
▴ 30
0
votes
1
reply
5.0k
views
convert PLINK file to genepop
SNP
genome
snp
updated 4 months ago by
Noeliton
• 0 • written 8.7 years ago by
age00
• 0
7
votes
6
replies
1.0k
views
6 follow
How do I interpert PCA before differential expression analysis
EDA
DESeq2
PCA
QC
updated 4 months ago by
Mensur Dlakic
★ 30k • written 4 months ago by
gogeni5529
▴ 90
3
votes
6
replies
885
views
RRBS (Reduced Representation Bisulfite Sequencing)
Trim
RRBS
Galore
updated 4 months ago by
dthorbur
★ 3.2k • written 4 months ago by
sk_24
• 0
0
votes
0
replies
801
views
News:
Course - Population Genomics Using Ancient DNA Data - Online, September 22-26
PopulationGenomics
aDNA
4 months ago by
Physalia-courses
★ 2.7k
0
votes
0
replies
508
views
Repeat expansion VCF from ONT RU field and displayRU differences with gnomAD STR dataset repeat units
VCF
STRs
annotation
4 months ago by
ieie
▴ 20
40
votes
11
replies
7.2k
views
12 follow
What Are Your Most-Used Public Data Repositories?
database
updated 4 months ago by
ATpoint
90k • written 12.3 years ago by
Sean Davis
27k
5
votes
6
replies
2.9k
views
7 follow
Is there a database of bioinformatics tools & databases?
ebi
entrez
updated 4 months ago by
ehaag
▴ 100 • written 4.0 years ago by
LauferVA
4.8k
3
votes
9
replies
3.2k
views
how can I search for a new release data?
next-gen
microarray
RNA-Seq
homology-modelling
updated 4 months ago by
ehaag
▴ 100 • written 10.7 years ago by
yoingchinchina
▴ 20
0
votes
3
replies
774
views
How to trace back found motifs from homer and fimo to bed file so that visualization in genome browser
motif
updated 4 months ago by
GenoMax
154k • written 4 months ago by
EdisonJ
• 0
0
votes
0
replies
375
views
Problem at running Automlsa2
tree
phylogenetic
outgroup
selection
updated 4 months ago by
GenoMax
154k • written 4 months ago by
muhammadirfanulislambcsir
• 0
0
votes
0
replies
369
views
Comparative value conversions between fold enrichment-SHINYGO and Stringdb Score
stringdb
shinygo
4 months ago by
feliyon86
• 0
0
votes
1
reply
404
views
Output of heatmap2 tool on Galaxy
heatmap2
updated 4 months ago by
GenoMax
154k • written 4 months ago by
Stefano
• 0
122,232 results • Page
15 of 2445
Recent Votes
Comment: Data integration single cell using Harmony
Answer: Feature Counts vs Salmon quantification
Answer: Chip-seq analysis Diffbind
Question about variant calling method using pangenome-graph
Comment: SyntaxError in file /snakefile, line 22: invalid decimal literal: None
Answer: Is this Rosalind inspired project actually useful?
Answer: Minimap2 segfaults when mapping Nanopore reads to a very large reference databas
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Comment: "sortmerna" quitting early--is this is a memory issue?
by
Andrew
• 0
Ok, here's the output: https://pastebin.com/uEHSckHS This run had the working directory in the default location, in sortmerna\run, but it …
Answer: Problems in Molecular Docking in Autodock vina
by
Anonsirs
• 0
Try to re run the command by first starting meeko and rdkit . to convert PDB files to PDQT files. It can help vina recognize the atom . a…
Comment: "sortmerna" quitting early--is this is a memory issue?
by
Andrew
• 0
Do you mean the maximum % RAM usage it reaches right before the moment it quits? As I said, the computer has 16 GB RAM, and the run fails w…
Comment: Chip-seq analysis Diffbind
by
Irene
▴ 10
Thank you very much for always answering my doubts and questions. I truly value and appreciate it because it helps me understand the result…
Comment: Minimap2 segfaults when mapping Nanopore reads to a very large reference databas
by
firefox91
▴ 10
Many thanks !
Answer: Re-assembling old RNA-seq reads vs. using an existing transcriptome assembly
by
GenoMax
154k
> I have access to both the raw reads and the previously assembled transcriptome submitted to TSA. and > I am trying to determine wheth…
Answer: Re-assembling old RNA-seq reads vs. using an existing transcriptome assembly
by
dthorbur
★ 3.2k
There are a few factors to consider: **The quality of the existing reference.** If there is a high quality chromosome level assembly,…
Comment: "sortmerna" quitting early--is this is a memory issue?
by
colindaven
8.1k
Pls add the output and your system (especially RAM), no one here can guess.
Answer: Power calculations for differentially methylated DNA samples from sequencing
by
colindaven
8.1k
There are software packages for power analysis such as https://academic.oup.com/bioinformaticsadvances/article/5/1/vbaf150/8173951.
Comment: Data integration single cell using Harmony
by
Arup Ghosh
3.5k
Run QC for each sample separately, then merge run SCTransform, PCA, then Harmony, UMAP, FindNeighbors and FindClusters.
Comment: Data integration single cell using Harmony
by
_deb
• 0
Thank you for the quick answer. I still have a doubt. It would be better to pre-process each sample separately (*filtering, SCTransform…
Comment: Issue while running Kenddata.
by
rana.elromh
• 0
I checked the memory before executing this command. I made a bash script on Ubuntu to run it on 15 folders. But, this problem happened in f…
Comment: Prokka output genes clusterization by function
by
Mensur Dlakic
★ 30k
Many proteins have multiple domains, and are correctly classified with multiple KO numbers. That's not a bug in `kofam_scan` but rather a r…
Comment: mapping sequences on specific region of bacteria genome
by
samuel.a.odonnell
▴ 650
If you want to visualise the mapping; take a look at using IGV. It just requires the genome you used to map the reads and the BAM output (n…
Comment: Prokka output genes clusterization by function
by
shevch2009
▴ 20
Thanks, I had completely forgotten that METABOLIC works with protein sequences. That will work :) I was just trying to figure out how peop…
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