1
vote
1
reply
465
views
9
votes
7
replies
3.3k
views
updated 3 months ago by
Damianos P. Melidis
▴
60
•
written 6.8 years ago by
DanielC
▴
210
0
votes
4
replies
853
views
0
votes
2
replies
537
views
0
votes
0
replies
1.1k
views
updated 3 months ago by
GenoMax
153k
•
written 3 months ago by
salma.sarker
•
0
0
votes
0
replies
432
views
3 months ago by
xinguok794
•
0
5
votes
1
reply
808
views
updated 3 months ago by
LChart
5.1k
•
written 3 months ago by
anita.szabo08
▴
10
1
vote
2
replies
618
views
0
votes
3
replies
700
views
1
vote
1
reply
976
views
0
votes
1
reply
579
views
2
votes
3
replies
689
views
updated 3 months ago by
shelkmike
★
1.8k
•
written 3 months ago by
synthiiihuh
•
0
0
votes
2
replies
570
views
3 months ago by
gil.hornung
▴
100
2
votes
4
replies
736
views
0
votes
3
replies
663
views
updated 3 months ago by
Arup Ghosh
3.4k
•
written 3 months ago by
SpliceAndScript
•
0
0
votes
1
reply
503
views
0
votes
1
reply
678
views
6
votes
6
replies
1.0k
views
10 weeks ago by
Nasim Gandomdoust
•
0
8
votes
3
replies
762
views
updated 3 months ago by
jared.andrews07
★
19k
•
written 3 months ago by
txema.heredia
▴
250
0
votes
0
replies
506
views
3 months ago by
Physalia-courses
★
2.6k
7
votes
12
replies
1.3k
views
0
votes
12
replies
1.8k
views
0
votes
0
replies
404
views
2
votes
3
replies
837
views
updated 3 months ago by
dariober
15k
•
written 3 months ago by
Matteo Ungaro
▴
130
4
votes
1
reply
639
views
0
votes
1
reply
533
views
updated 3 months ago by
GenoMax
153k
•
written 3 months ago by
nmannda148
•
0
0
votes
4
replies
754
views
6
votes
6
replies
902
views
0
votes
0
replies
418
views
3 months ago by
mickley413
•
0
1
vote
10
replies
2.5k
views
2
votes
4
replies
1.1k
views
1
vote
2
replies
615
views
1
vote
2
replies
610
views
3 months ago by
yura.grabovska
▴
820
0
votes
0
replies
513
views
3 months ago by
Physalia-courses
★
2.6k
2
votes
5
replies
805
views
updated 3 months ago by
GenoMax
153k
•
written 3 months ago by
Assa Yeroslaviz
★
1.9k
3
votes
5
replies
905
views
updated 3 months ago by
Mensur Dlakic
★
30k
•
written 3 months ago by
shevch2009
▴
20
0
votes
2
replies
607
views
3 months ago by
khp35
•
0
0
votes
0
replies
447
views
0
votes
1
reply
863
views
0
votes
0
replies
431
views
6
votes
3
replies
742
views
0
votes
1
reply
561
views
updated 3 months ago by
Pierre Lindenbaum
166k
•
written 3 months ago by
María José
▴
10
4
votes
7
replies
4.2k
views
updated 3 months ago by
Joel Wallenius
▴
220
•
written 5.2 years ago by
AR
•
0
2
votes
8
replies
1.1k
views
3 months ago by
AIMAR
▴
70
2
votes
2
replies
634
views
updated 3 months ago by
Pierre Lindenbaum
166k
•
written 3 months ago by
María José
▴
10
9
votes
13
replies
1.3k
views
updated 3 months ago by
colindaven
7.9k
•
written 3 months ago by
mthm
▴
80
6
votes
2
replies
591
views
3
votes
4
replies
665
views
4
votes
2
replies
596
views
4
votes
5
replies
929
views
Recent Votes
Recent Locations •
All
Austria/Vienna, 1 minute ago
Heraklion, Crete, Greece, 9 minutes ago
USA, 32 minutes ago
Taiwan, 53 minutes ago
India, 1 hour ago
Norway, 1 hour ago
Qatar, 1 hour ago
Recent Awards •
All
Popular Question to
Panos
★
1.8k
Popular Question to
amy967107
•
0
Popular Question to
Chris
▴
360
Popular Question to
Michael
56k
Popular Question to
Andrew Su
5.0k
Popular Question to
bioinformatics_rk
▴
10
Popular Question to
e.r.zakiev
▴
260
Recent Replies
Comment: Yeast reference-based genome assembly
by
amy967107
•
0
I have ~2.01 Gb of ONT data and the target genome is ~20–23 Mb (90–100× coverage). My ONT read N50 is ~3.8 kb, so contiguity may be limited…
Comment: Yeast reference-based genome assembly
by
amy967107
•
0
This is a yeast strain (probably Rhodotorula spp.) and I'm trying to assemble the entire genome from nanopore reads using a reference-based…
Answer: Yeast reference-based genome assembly
by
Michael
56k
The new [hifiassm ONT][1] may be all you need for getting a good assembly. I would not recommend LRSDAY, except for its annotation part (wh…
Comment: magpurify errors
by
Mensur Dlakic
★
30k
By the way, these errors are not unique. If you look through the `magpurify` GitHub issues, both types have been reported already.
- https…
Comment: magpurify errors
by
Mensur Dlakic
★
30k
There is absolutely no chance that a contig labeled `k127_4584534` doesn't exist in your fasta files. These names are not made up out of th…
Comment: magpurify errors
by
shevch2009
▴
20
Strange but there are no such headers or contig names in my fasta files
Comment: replace gene names in gff file
by
Juke34
9.3k
Yes the --prefix Option exists. There is no count per chromosome. You can do it by splitting your input and analyse one sequence at a time…
Comment: Variant analysis for mouse WES
by
GenoMax
153k
You could open a new issue and ask the developers of `maftools` if this was something they can add.
Comment: How to Identify Conserved 21-mers Across TE Insertions in Drosophila?
by
GenoMax
153k
Do you have the locations/sequence of the regions you are interested in?
Comment: magpurify errors
by
Mensur Dlakic
★
30k
To me that sounds like an error in sequence header formatting. Maybe some contig headers are repeated? Or their sequences are short or miss…
Comment: magpurify errors
by
shevch2009
▴
20
Thanks
What about phylo-markers module error, I tried to look for it :)
But haven't found anything.
And why it's not working for some but …
Answer: magpurify errors
by
Mensur Dlakic
★
30k
A general answer is to always Google the error message. Hopefully you do that in the future. This is the outcome of Googling `AttributeErro…
Comment: Splice junctions plots for long-read seq data
by
LChart
5.1k
IGV can view coverage and splice junction sashimi plots. However the plot in the paper looks like it was made with miso. https://miso.readt…
Comment: Yeast reference-based genome assembly
by
GenoMax
153k
> The gene originates from yeast,
What does this mean? Are you putting a gene from a different genus/species into some other yeast? Are yo…
Traffic: 3856 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6