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194 results • Page
4 of 4
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Views
Votes
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0
votes
0
replies
126
views
Mitogenomes gap closure and making circular genome
gapclosure
Mitogenomes
validation
circulargenome
3 days ago by
KHURRAM SHAHZAD
• 0
0
votes
1
reply
125
views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
Genomics
Bioinformatics
ATACseq
CancerResearch
updated 2 days ago by
LChart
3.9k • written 2 days ago by
David
• 0
0
votes
1
reply
121
views
PseudobulkExpression.Seurat error
Seurat
pseudo-bulk
updated 17 hours ago by
Bastien Hervé
5.3k • written 1 day ago by
sooni
▴ 20
0
votes
0
replies
119
views
Job:
Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
Genomics
Alzheimer
multiomics
neuroimaging
2 days ago by
belloy
• 0
0
votes
0
replies
117
views
Clarification on StringTie's `--merge` parameters
stringtie
stringtie-merge
3 days ago by
DGTool
• 0
0
votes
0
replies
115
views
Help with VG Toolkit: VCF Output is Empty
vg
updated 2 days ago by
Pierre Lindenbaum
161k • written 2 days ago by
sarumonsus
• 0
0
votes
1
reply
114
views
featureCounts output summary assigned value higher than uniquely mapped reads from HISAT2
RNA-seq
featureCounts
HISAT
10 hours ago by
Prawesh
• 0
0
votes
0
replies
115
views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
Bacteria
Metagenomics
Database
3 days ago by
Christopher
• 0
0
votes
1
reply
115
views
Obtaining Infinium Methylation450K manifest for hg38
TCGA
hg38
methylation
Illumina
updated 12 hours ago by
marco.barr
▴ 90 • written 15 hours ago by
elisheva
▴ 120
0
votes
0
replies
114
views
How to implement an IGV to streamlit app?
python
streamlit
igv
3 days ago by
avigail.shnaider
• 0
0
votes
0
replies
113
views
Why does my Hi-C contact map show large regions making little to no contact?
BWA-MEM2
Hi-C
PretextMap
58 minutes ago by
Winter
• 0
0
votes
0
replies
111
views
Error while loading model of Spatial data deconvolution using cell2location
Python
cell2location
updated 2 days ago by
Ram
43k • written 2 days ago by
sidrah.maryam
▴ 50
0
votes
2
replies
110
views
How/where can I get fungal mitogenome data for analysis?
fungal
mitogenome
updated 16 hours ago by
GenoMax
142k • written 17 hours ago by
madders73
• 0
0
votes
0
replies
109
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
3 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
108
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 6 days ago by
Ram
43k • written 6 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
108
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
1 day ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
106
views
Cox Model with interaction item interpretation
Cox
2 days ago by
Bine
▴ 60
2
votes
1
reply
106
views
java out of memory error through beagle for imutation
beagle
java.out.of.memory
imputation
1 day ago by
analyst
▴ 50
0
votes
0
replies
103
views
Imputation of missing genotypes
panel
beagle
imputation
1 day ago by
analyst
▴ 50
0
votes
0
replies
102
views
Get Paired TCRa/b from MIXCR
python
r
mixcr
tcr_seq
2 days ago by
Scott McKay
▴ 30
0
votes
0
replies
102
views
Cellphonedb results
cpdb
visulization
cellphonedb
2 days ago by
piotto
▴ 20
0
votes
0
replies
102
views
Chance for trained without experience
bio
updated 20 hours ago by
ATpoint
82k • written 21 hours ago by
shehab
• 0
0
votes
0
replies
101
views
Use of annotation of integrated Seurat object in single sample
Seurat
6 days ago by
Bine
▴ 60
0
votes
0
replies
101
views
vdjtools
vdjtools
2 days ago by
yueli7
▴ 250
0
votes
0
replies
98
views
Normalizing AMR gene count data
abundance
RGI
updated 2 days ago by
Ram
43k • written 2 days ago by
arshad1292
▴ 100
0
votes
0
replies
93
views
how to downlad slices of CRAM fro ICGC ARGO
icgc
samtools
cram
2 days ago by
Javier
• 0
0
votes
1
reply
92
views
bcftools - reducing to "sites-only"?
sites-only
bcftools
updated 8 hours ago by
Pierre Lindenbaum
161k • written 9 hours ago by
Matthew
• 0
0
votes
0
replies
86
views
monocle 3-- Could not get node in small cluster
monocle3
1 day ago by
synat.keam
▴ 100
0
votes
1
reply
85
views
Contig assembly task, errors
genetics
contig
assembly
dna
bioinformatics
updated 6 hours ago by
GenoMax
142k • written 8 hours ago by
rackbersingh
• 0
0
votes
0
replies
82
views
meffil.snp.concordance
meffil
methylation
snp_concordance
1 day ago by
kyj222637
• 0
0
votes
1
reply
78
views
Help with Biopython for Beginner
Python
ORF
FASTA
Biopython
updated 4 hours ago by
Ram
43k • written 9 hours ago by
cput
• 0
0
votes
0
replies
78
views
Xenium multi sample data
batch
annotation
cell
Xenium
effect
22 hours ago by
Omics data mining
▴ 260
0
votes
0
replies
73
views
Blog:
Overview of Nanopore Sequencing
biotech
1 day ago by
usa.cd.genomics
• 0
0
votes
0
replies
71
views
News:
Online course: Introduction to Deep Learning
Python
Deep-Learning
Convolutional-Neural-Network
Machine-Learning
updated 11 hours ago by
Ram
43k • written 16 hours ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
70
views
Generating .bed file and .map file for polyploid vcf file through plink
bed
polyploid
map
plink
1 day ago by
analyst
▴ 50
0
votes
0
replies
68
views
Blog:
Introduction to The Complete Sequence of a Human Genome
biotech
1 day ago by
usa.cd.genomics
• 0
0
votes
1
reply
60
views
Enhanced Volcano-Cut off
foldchange
enhancedvolcano
updated 36 minutes ago by
marco.barr
▴ 90 • written 9 hours ago by
odi
▴ 10
0
votes
0
replies
57
views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep
vcf
gnomad
10 hours ago by
asalimih
▴ 60
0
votes
0
replies
56
views
Pathway analysis of Bacteria from denovo genome assembly
KEGG-KASS
WGS
Pathway
denovo
updated 11 hours ago by
Ram
43k • written 14 hours ago by
mathavanbioinfo
▴ 90
0
votes
4
replies
51
views
Importing a fastq file
Fastq
1 hour ago by
oumo
• 0
0
votes
0
replies
46
views
Long reads and fixing of mate-pair issues/marking duplicates with samtools
mate-pair
samtools
alignment
6 hours ago by
Zeng Hao
▴ 40
0
votes
0
replies
42
views
Summary Statistics SNPs not found in Target data
SNP
plink
PRS
updated 5 hours ago by
Ram
43k • written 5 hours ago by
curious_butterfly
• 0
0
votes
1
reply
28
views
Conda severely broken after attempting mamba install
biopython
conda
mamba
pycosat
updated 1 hour ago by
andres.firrincieli
3.6k • written 1 hour ago by
kacollier
▴ 30
0
votes
0
replies
27
views
Server or aws cloud- which one is better for gatk pipeline
aws
server
calling
gatk
cloud
variant
2 hours ago by
ashaneev07
▴ 20
194 results • Page
4 of 4
Recent Votes
Comment: Problem with Seurat package in PercentageFeatureSet function
Answer: Can I merge Hi-C fastq files from different lanes?
A: How to get SNP identifiers from VCF file?
Answer: How can I analyze normalized expression data?
Answer: How can I analyze normalized expression data?
Answer: Pruning Phylogenetic Trees and Bootstrap Values
Difference between Pysam Pileup and Fetch
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kacollier
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• 0
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Recent Replies
Comment: Problem with Seurat package in PercentageFeatureSet function
by
Yoosef
▴ 60
Thanks a lot for your response. Today, I finally understood what my problem was. I have used CreateAssayObject function, while I should ha…
Comment: Correlation Analysis
by
Researcher
▴ 30
there is only one value of methylation and expression per gene. I did perform corr(gene_corr$methylation_values, gene_corr$expression_value…
Answer: Enhanced Volcano-Cut off
by
marco.barr
▴ 90
from the documentation it seems that it reports limits for the value of log2 fold-change in an absolute sense. FCcutoff: Cut-off for…
Answer: Importing a fastq file
by
oumo
• 0
The fastq file is in my local disk, and I want to upload it to Ubuntu
Comment: Conda severely broken after attempting mamba install
by
andres.firrincieli
3.6k
I have been there... I just reinstalled conda.
Comment: Importing a fastq file
by
marco.barr
▴ 90
That's right.. With `cp` command from terminal cp /mnt/c/path/to/your/fastq/file.fastq /path/in/wsl/
Comment: Copy number Variation analysis using conumee
by
zylcc2
• 0
if your seqnames include "chrX" or "chrY", should add "chrXY=TRUE". like this : anno_combine <- CNV.create_anno(bin_minprobes = 15, bin_min…
Comment: Importing a fastq file
by
ATpoint
82k
Windows is mounted as `/mnt/c/...` in WSL (at least in WSL2).
Answer: Importing a fastq file
by
marco.barr
▴ 90
Can you explain better what you mean? If I understand correctly, your fastq file must be in the Ubuntu home folder of your wsl to be able t…
Answer: Seurat CellCycleScoring – confused about the proper order of operations when usi
by
Li
• 0
I‘m not an expert in sctransform or cellcyclescoring. But I think it's because sctransform creates a new assay named "SCT", which is differ…
Comment: How can I analyze normalized expression data?
by
mnx0723
• 0
thank you for comment
Comment: Pruning Phylogenetic Trees and Bootstrap Values
by
Zeng Hao
▴ 40
Dear Klaus, Thank you for the reply. If I could clarify with an example: With this tree, B0----------------- A -| B1----------…
Answer: Contig assembly task, errors
by
Philipp Bayer
8.4k
Feels a bit strange for an aptitude test, feels more like homework. 1) seems OK to me, just chuck them into CAP3 and see what falls out.…
Comment: Help with Biopython for Beginner
by
Pierre Lindenbaum
161k
Please do not paste screenshots of plain text content, it is counterproductive. You can copy paste the content directly here (using the cod…
Answer: bcftools - reducing to "sites-only"?
by
Pierre Lindenbaum
161k
bcftools view -G in.vcf.gz <!-- Diabetic foot ulceration (DFU) is a devastating complication of diabetes whose pathogenesis rema…
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