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121,832 results • Page
415 of 2437
Sort: Rank
Rank
Views
Votes
Replies
3
votes
3
replies
1.0k
views
Cytoscape Tetramer Error Without Hints
regulator
prediction
Cytoscape
GRN
tetramer
updated 5 months ago by
Scooter
▴ 310 • written 3.2 years ago by
630720255
▴ 20
2
votes
2
replies
901
views
Cytokine/ Growth factor responsive gene list
Database
Factor
Growth
Cytokine
updated 3.2 years ago by
Michael
56k • written 3.2 years ago by
Tonkatsu
▴ 30
0
votes
2
replies
1.1k
views
Multiplex PCR Primers
Multiplex_PCR
primer_compatibility
3.2 years ago by
Fatemeh Nabizadeh
▴ 10
0
votes
0
replies
621
views
News:
Online course- Reproducibility in Bioinformatics - 11-13 July
Docker
Reproducibility
updated 2.7 years ago by
Ram
45k • written 3.2 years ago by
Physalia-courses
★ 2.6k
0
votes
0
replies
559
views
Is Kinship coefficient and coefficient of relationship the same?
relationship
Kinship
relatedness
coefficient
3.2 years ago by
sjlee4019
• 0
2
votes
2
replies
924
views
find pairwise transcriptional similarities between samples
RNA-seq
r
updated 3.2 years ago by
Michael
56k • written 3.2 years ago by
fifty_fifty
▴ 90
0
votes
2
replies
1.1k
views
Is the definition of the secondary_structure_fraction function wrong?
Biopython
3.2 years ago by
renjing679
• 0
8
votes
6
replies
2.7k
views
Feature Selection in Large Dataset with High Multicollinearity
multicollinearity
selection
feature
cox
interpretability
model
regression
3.2 years ago by
KernelGhost
• 0
0
votes
1
reply
1.4k
views
How to normalize gene abundance from metagenomic data?
gene-abundance
normalization
R
metagenomics
updated 3.2 years ago by
Asaf
10k • written 3.2 years ago by
v.berriosfarias
▴ 140
5
votes
5
replies
1.4k
views
Where can I find single cell genome sequencing?
dna
single-cell-sequencing
3.2 years ago by
d
• 0
5
votes
7
replies
2.1k
views
6 follow
Pathway Enrichment
KEGG
ORA
ENRICHMENT
PATHWAY
updated 3.2 years ago by
GenoMax
153k • written 3.2 years ago by
SKY
▴ 60
1
vote
1
reply
1.1k
views
gene name of DEG ID
name
gene
ID
DEG
of
updated 3.2 years ago by
Laura Luebbert
▴ 450 • written 3.2 years ago by
m.esmaeilpour
▴ 10
0
votes
5
replies
1.5k
views
check rna-seq alignment quality using IGV
rna-sequencing
alignment
IGV
updated 3.2 years ago by
Ram
45k • written 3.2 years ago by
Tonkatsu
▴ 30
1
vote
2
replies
942
views
Why sample only part of the genome with RepeatModeler?
repeat
repetitive
transposable
3.2 years ago by
caleigh
• 0
0
votes
6
replies
1.7k
views
Code to find the list of genes in the DEG table in R?
R
3.2 years ago by
Maryam
• 0
0
votes
0
replies
569
views
Cufflinks de novo transcriptome assembly: genome indexing discrepancy causing assembly problems
GFaSeqGet
cuffmerge
STAR
cufflinks
transcriptome
3.2 years ago by
Mason
• 0
0
votes
8
replies
1.6k
views
Verifying BAM Header
headers
BAM
3.2 years ago by
sbilobram
▴ 20
0
votes
8
replies
1.5k
views
Subsetting synthetic reads to a number of different total read numbers
python
subsetting
R
fastq
bash
3.2 years ago by
Jonathan
▴ 20
1
vote
2
replies
900
views
Weird over-represented sequence in sn/scRNASeq fastqc
single
cell
nuclei
FASTQC
RNASeq
3.2 years ago by
Tania
▴ 180
0
votes
1
reply
624
views
Using UCSC's Table Tool
UCSC
updated 2.2 years ago by
Ram
45k • written 3.2 years ago by
Sasha
• 0
0
votes
0
replies
603
views
Proteomics to pathway data analysis R and Python packages
pathway
proteomics
normalized
3.2 years ago by
sbt_gvs
• 0
0
votes
0
replies
470
views
Cellranger multi with single sample: reads not assigned to sample
10x
cellranger
scrna-seq
3.2 years ago by
Igor
▴ 50
0
votes
1
reply
642
views
Calculating the frequency of every pathogenic germline variant in every disease cohort?
r
bioconductor
biostatistics
updated 2.7 years ago by
Ram
45k • written 3.2 years ago by
Hasan
• 0
1
vote
7
replies
6.9k
views
Merge multiple VCF files (same variants, same sample) into one VCF file
annotation
vcf
written 8.0 years ago by
Eleanore
▴ 10
1
vote
0
replies
895
views
Herald:
The Biostar Herald for Monday, June 13, 2022
herald
3.2 years ago by
Biostar
3.6k
4
votes
4
replies
999
views
Do we trim only second read in single cell RNASeq or both?
cellsingleRNAseq
RNASeq
3.2 years ago by
Claire
• 0
1
vote
6
replies
1.6k
views
What the purpose of compare gene tree and species topologies?
topologies
3.2 years ago by
lkj666
• 0
9
votes
11
replies
3.6k
views
[R] How to make Contrast for Differential Expressed with more classes than 2 ?
de
gene
dge
R
edgeR
3.2 years ago by
ali
▴ 20
2
votes
2
replies
903
views
Please help, Deseq2 tool without replicates
deseq2
updated 3.2 years ago by
ATpoint
89k • written 3.2 years ago by
kuttibiotech2009
▴ 30
4
votes
6
replies
2.8k
views
fastq.gz download error
fastq
rna-seq
updated 3.2 years ago by
Ram
45k • written 3.3 years ago by
nishimalhotra2612
▴ 50
0
votes
2
replies
906
views
Assembly of rna-long reads (NP)
nanopore
rna-seq
3.2 years ago by
bioinfo_ga
▴ 70
0
votes
0
replies
656
views
Could someone please help me understand the outputs for HapFlk
Pzero
Flk
nan
HapFlk
3.2 years ago by
sjlee4019
• 0
0
votes
1
reply
941
views
Bowtie2 - Snakemake
docker
bowtie2
snakemake
updated 2.2 years ago by
FGV
▴ 170 • written 3.2 years ago by
Mohammed
▴ 10
0
votes
0
replies
742
views
Doubt with Hisat2-RSEM counting
RSEM
Hisat2
RNA-seq
3.2 years ago by
JGMC
• 0
2
votes
2
replies
936
views
Splitting VCF by sample: different files but same SNPs number
VCF
bcftools
GWAS
SNPs
plink
3.2 years ago by
greed
▴ 10
2
votes
5
replies
1.6k
views
How can I randomly choose and delete a set number of nucleotides from a fasta file?
random
fasta
trim
3.2 years ago by
Jonathan
▴ 20
0
votes
1
reply
796
views
promoter analysis with DEG RNA-seq
RNA-seq
promoter
with
DEG
analysis
updated 3.2 years ago by
Asaf
10k • written 3.2 years ago by
m.esmaeilpour
▴ 10
3
votes
3
replies
1.2k
views
Stranded or not stranded Fasq data
RNAseq
aligment
kallisto
updated 3.2 years ago by
iraun
6.2k • written 3.2 years ago by
alruta13
• 0
3
votes
5
replies
2.9k
views
fgsea resulting in an empty datafram
pathway
fgsea
enrichment
3.2 years ago by
Storm
▴ 10
5
votes
1
reply
1.1k
views
Ensembl: How to convert gene names from GRCh37 to GRCh38
annotation
ensembl
assembly
genome
updated 3.2 years ago by
Pierre Lindenbaum
166k • written 3.2 years ago by
r.kalampaliki
• 0
0
votes
2
replies
1.7k
views
snRNASeq: How to fix low fraction reads in cells and high fraction map to antisense gene warnings?
cellranger
snRNASeq
3.2 years ago by
Claire
• 0
1
vote
2
replies
750
views
SSPace | Search Pattern Terminated
SSPace
3.2 years ago by
mercadomarkcyril28
• 0
2
votes
4
replies
1.7k
views
Differences between the application of function end-to-end and local in Bowtie2
alignment
NGS
Bowtie2
updated 3.2 years ago by
ATpoint
89k • written 3.2 years ago by
Abieskawa
• 0
3
votes
3
replies
1.6k
views
Ion Torrent mapper
Mapping
Ion
Torrent
3.2 years ago by
Dominika
• 0
0
votes
1
reply
929
views
Bad request in KEGG
pathway
ghostkoala
kegg
updated 3.2 years ago by
andres.firrincieli
3.9k • written 3.2 years ago by
Nailah
• 0
0
votes
0
replies
790
views
DeconRNASeq: Extract gene names from returned mixing proportions
deconrnaseq
bioconductor
r
3.2 years ago by
LRStar
▴ 200
2
votes
4
replies
1.4k
views
Remove characters before the last underscore and replace them with a numerical value
python
linux
perl
3.2 years ago by
Percy
• 0
2
votes
2
replies
991
views
Classification with SVM
SVM
Python
Classification
LOOCV
3.2 years ago by
ali
▴ 20
0
votes
2
replies
801
views
Modification of dataframe values based on word lenght
pandas
python
dataframe
updated 3.2 years ago by
Ram
45k • written 3.2 years ago by
Ratona
• 0
0
votes
2
replies
1.0k
views
Likelihood that increase is not by chance
research-tools
research-design
genes
biostatistics
statistics
3.2 years ago by
Lasha
▴ 10
121,832 results • Page
415 of 2437
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Answer: Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the
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Answer: CBioPortal: What does Mutation type: Targeted_Region means?
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To me knowledge, ensembl approach means that you run several tools and then run some sort of filtration and classification approach to deci…
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vg is a toolkit containing different tools. What are you talking about when you want to use 'input' and 'output' files.
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Thank you. Even if I build the XG index after some modifications, the building of gcsa failed even on a single chromosome. Even though I h…
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by
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★ 29k
For posterity, here is `nvidia-smi` output for our cluster: ``` +-------------------------------------------------------------------------…
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by
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How often do we get a chance to help @yokofakun after all the help Pierre has provided? I feel like we have to make a serious effort here. …
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Are you running this under a job scheduler? Is there a separate partition for the GPU's/are they accessible to the scheduler?
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thank you.
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Are the batches biological replicates?
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If you want to save time at the cost of having a lesser understanding of how bioinformatic programs work, you may study through the BioStar…
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I would recommend, in the following order:<br> 1) Go through Bioinformatics Algorithms, either as a video course or as a book, and do all e…
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For what is worth, in a previous project, I have done some tests on different hierarchical clustering methods for single cell RNAseq. I had…
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* Get some data - either your own or from a paper / GEO / ArrayExpress / SRA / TCGA / cBioPortal etc etc. * Look at the methods of papers…
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