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121,919 results • Page
69 of 2439
Sort: Rank
Rank
Views
Votes
Replies
1
vote
1
reply
542
views
Interpreting MA plot - DEG
R
DEG
ggplot2
updated 12 months ago by
Ram
45k • written 12 months ago by
NEWBIE
• 0
2
votes
1
reply
1.6k
views
Understanding behaviour of SCTransform in Seurat
Seurat
scRNASeq
normalization
updated 12 months ago by
alg507
• 0 • written 16 months ago by
yura.grabovska
▴ 820
0
votes
0
replies
886
views
Missing value where TRUE/FALSE needed in Seurat's IntegrateLayers(), unsure if error with Seurat or session
seurat
12 months ago by
K
• 0
0
votes
4
replies
981
views
Looking for proteins play role in cardiovascular diseases (disease ontology)
proteomics
protein
uniprot
disease-ontology
12 months ago by
Bendegúz
• 0
1
vote
2
replies
1.4k
views
Job:
Variant Analyst Opening in Qatar
Clinical-Interpretation
CNV
SNV
updated 12 months ago by
Medhat
9.8k • written 13 months ago by
rajeefa
▴ 10
0
votes
1
reply
452
views
Convert vcf to specified input
snp
vcf
updated 12 months ago by
Pierre Lindenbaum
166k • written 12 months ago by
thomm80
• 0
0
votes
4
replies
1.1k
views
Genotype imputation without a reference panel
genotyping-array-data
reference-panel
genotype-imputation
updated 12 months ago by
Pine
▴ 20 • written 12 months ago by
Mohadese
• 0
0
votes
0
replies
364
views
Significant colocalisation across two GWAS SumStats with opposite "effect sizes"
coloc
effect-size
GWAS
colocalisation
12 months ago by
Pine
▴ 20
2
votes
4
replies
1.0k
views
MoCha For CNV calling
mocha
cnv
updated 12 months ago by
Ram
45k • written 12 months ago by
heureuse
▴ 10
2
votes
3
replies
2.0k
views
Structural Variants (SV) Manta output interpretation
manta
vcf
updated 12 months ago by
DGTool
▴ 290 • written 12 months ago by
aLex97
• 0
3
votes
2
replies
802
views
Understanding how champ.DMP determines the reference group for phenotypes
phenotype
ChAMP
champ.DMP
R
12 months ago by
Benjamin
▴ 10
1
vote
1
reply
602
views
Samtools: exclude secondary and supplementary alignments
samtools
updated 12 months ago by
Ram
45k • written 12 months ago by
Alexandra
• 0
0
votes
0
replies
378
views
News:
Variant Analysis Online Course @ Edinburgh Genomics
variant-analysis
online-training
updated 12 months ago by
Ram
45k • written 12 months ago by
Edinburgh Genomics Training
▴ 40
2
votes
3
replies
919
views
Variant callers for single cell WGS
variant
Single-cell
WGS
12 months ago by
Binny
• 0
2
votes
6
replies
1.1k
views
Problem while using Tophat 2.1.0 to search gene fusions
blast
tophat
12 months ago by
Pallondyle
• 0
0
votes
2
replies
728
views
Significant p values with non significant looking figures
pvalue
fish
microbiomes
PCoA
updated 12 months ago by
Philipp Bayer
8.9k • written 12 months ago by
mattescott44
• 0
6
votes
8
replies
1.4k
views
calling super enhancers
Ose
10 months ago by
Oburah
• 0
2
votes
1
reply
698
views
Best approach for identifying top proteins in a single cluster in single-cell analysis
ADT
CITEseq
Single-cell
Seurat
updated 12 months ago by
bk11
★ 3.1k • written 12 months ago by
singAsong
▴ 10
1
vote
2
replies
812
views
Comparing exposure time points of RNA-seq data of samples exposed to various treatments
transcriptomics
time-series
updated 12 months ago by
Arby
• 0 • written 12 months ago by
abba647
▴ 10
0
votes
0
replies
370
views
generate consensus sequence for PSMC analysis
bcftools
consensus-sequence
updated 12 months ago by
Ram
45k • written 12 months ago by
asatullayevtemurrr
• 0
0
votes
2
replies
615
views
Tools for assembling Plasmid Genome
Illumina
Plasmid
E.coli
Assembly
12 months ago by
adarsh
▴ 60
1
vote
4
replies
1.1k
views
Poor dispersion fit in DESeq2
deseq2
RNA-seq
edgeR
limma
updated 12 months ago by
Ram
45k • written 12 months ago by
Ben
▴ 30
1
vote
5
replies
1.1k
views
RNASeq Analysis: data from different library
RNA-seq
ngs
updated 12 months ago by
i.sudbery
22k • written 12 months ago by
Matteo
• 0
0
votes
4
replies
900
views
R-studio, install, R, Installation error
Rstudio
offtopic
updated 12 months ago by
Michael
56k • written 12 months ago by
naveennavinbeast
• 0
2
votes
1
reply
577
views
ATAC-Seq Differential Peak Analysis
ATAC-SEQ
updated 12 months ago by
Ram
45k • written 12 months ago by
B.N.
▴ 10
0
votes
0
replies
341
views
How to calculate inbreeding coefficient out of ROH (Plink)
plink
12 months ago by
t-ishige
• 0
0
votes
4
replies
2.5k
views
Transcriptome Improvement Using Cell Ranger Count vs. ARC for RNA-Seq Data from Frozen Nuclei in Multimodal Analysis
multiomics
scATAC
cellranger
scRNA
10X
updated 12 months ago by
jared.andrews07
★ 19k • written 12 months ago by
NaomiK
• 0
2
votes
1
reply
484
views
ROAST
RNA-SEQ
updated 12 months ago by
GenoMax
153k • written 12 months ago by
Pegasus
▴ 130
0
votes
0
replies
385
views
Quorum sensing genes in Bacteria
RNA-SEQ
12 months ago by
Pegasus
▴ 130
0
votes
0
replies
424
views
Uncertainty on Which Data to Use for Alpha Diversity Analysis (Shannon)
Iteration
Shannon
Rarefaction
Boxplot
Alpha
12 months ago by
Joe Kherery
▴ 140
0
votes
0
replies
343
views
Can I use a dataset that has batch effect as a reference in scmap?
scRNA-seq
annotation
12 months ago by
D
• 0
1
vote
2
replies
773
views
Track file for the DADA2 pipelne
microbiome-analysis
metagenomics
dada2
16s-amplicon
12 months ago by
naveedhasan2000
▴ 10
0
votes
2
replies
704
views
Help with data finding.
p_value
ncbidataset
replot
12 months ago by
A29J
• 0
0
votes
0
replies
528
views
News:
online course - Metabolomics with R/Bioconductor
Metabolomics
Bioconductor
Multivariate-Data
Untargeted
Targeted
updated 12 months ago by
Ram
45k • written 12 months ago by
Physalia-courses
★ 2.6k
5
votes
9
replies
3.9k
views
Creating a Seurat object with Visium public available data
Spatial
Visium
10X
updated 12 months ago by
Nat.Nataren
▴ 100 • written 16 months ago by
charms.charms
• 0
0
votes
9
replies
1.8k
views
How to approach DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days post infection)
multifactor
DESeq2
12 months ago by
duplessisantzel
• 0
0
votes
1
reply
679
views
Noise confounding genes in single cell data
single-cell
updated 12 months ago by
Ram
45k • written 12 months ago by
carolofharvest
▴ 50
0
votes
1
reply
664
views
Zea Maize ID conversion
ID-conversion
zea-mays
updated 12 months ago by
Ram
45k • written 12 months ago by
SKY
▴ 60
0
votes
0
replies
567
views
How to build a spliced pangenome graph and a pantranscriptome
vg
12 months ago by
Wenhai
• 0
0
votes
0
replies
428
views
Merging Imputed VCF with Reference Panel VCF
VCF
GLIMPSE
Imputation
12 months ago by
selplat21
▴ 20
3
votes
5
replies
1.9k
views
Salmon quantification not as expected; "versionInfo.json doesn't seem to exist"
salmon
updated 12 months ago by
dsull
★ 7.7k • written 12 months ago by
Haad
• 0
0
votes
1
reply
659
views
Harmony integration of integarted samples
scRNA-seq
harmony
updated 12 months ago by
jared.andrews07
★ 19k • written 12 months ago by
fifty_fifty
▴ 90
2
votes
2
replies
865
views
index sequence in fastq header
fastq
12 months ago by
hpapoli
▴ 170
0
votes
3
replies
904
views
Build RG information for BWA
bwa
updated 12 months ago by
GenoMax
153k • written 12 months ago by
hpapoli
▴ 170
19
votes
21
replies
4.7k
views
7 follow
Help Choosing a Workstation for a New Bioinformatics Service
NGS
hardware
workstation
updated 12 months ago by
i.sudbery
22k • written 12 months ago by
AresSanchz
• 0
0
votes
0
replies
413
views
spike-in-methods in 16s microbial analysis
16s
spike-in
microbiome
12 months ago by
mrashad
▴ 80
0
votes
0
replies
410
views
Is this phasing result normal?
haplotyping
sequencing
phasing
nanopore
12 months ago by
njornet
▴ 20
0
votes
0
replies
321
views
Selection Pressure Analysis
Selection-Pressure
ka-ks
updated 12 months ago by
Ram
45k • written 12 months ago by
zhu
• 0
2
votes
2
replies
860
views
X chromosome in bedtoolsIntersect
bedtools
updated 12 months ago by
Pierre Lindenbaum
166k • written 12 months ago by
wiscoyogi
▴ 40
0
votes
1
reply
860
views
est-sfs error
est-sfs
non-model-organism
ancestral-allele
updated 12 months ago by
shanghonyu
• 0 • written 13 months ago by
Whirlingdaf
▴ 60
121,919 results • Page
69 of 2439
Recent Votes
A: Binning Over Genes And Calculating The Coverage [Bedops/Bedmap]
Answer: [vg giraffe] Unable to add read group to BAM file
Comment: [vg giraffe] Unable to add read group to BAM file
Answer: [vg giraffe] Unable to add read group to BAM file
Answer: vcf multisample
Answer: vcf multisample
Answer: vcf multisample
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Recent Replies
Comment: miRNA low mapping ratings
by
Ant
▴ 50
The first one it's the results from Cutadapter and the second block from miRDeep2.
Comment: miRNA low mapping ratings
by
Ant
▴ 50
Thanks for the reply, when running: cutadapt -a AACTGTAGGCACCATCAAT -M 30 -o example_trimmed.fastq.gz data/xxx.fastq.gz, the sequence le…
Comment: Help with species tree with orthofinder, iqtree and branch labeling
by
GenoMax
153k
> I don’t have clear species labels in my headers, only sequence IDs. I have not used iqtree, so this is only a thought ... should it be y…
Comment: Help with species tree with orthofinder, iqtree and branch labeling
by
san96
▴ 190
Thank you so much.
Comment: [vg giraffe] Unable to add read group to BAM file
by
saruman
▴ 10
Yes, it seems so. Thank you.
Comment: cellranger mkref fail/error
by
GenoMax
153k
> The thing is that I do not have a genome for these organisms. That is not what `cellranger mkref` is expecting. You could consider alt…
Comment: cellranger mkref fail/error
by
tatsispolychronis
• 0
The thing is that I do not have a genome for these organisms. i made a transcriptome using TRinity and this is what I am feeding it. I do n…
Comment: Genome Assembly QC from BAM files
by
SomeOne
▴ 240
Hi, I am not sure if i can call them good assemblies. Although based on QUAST and BUSCO stats, everything looks too good but somehow i hav…
Comment: cellranger mkref fail/error
by
GenoMax
153k
You need to provide the genome reference for the `--fasta` option as noted in https://www.10xgenomics.com/support/software/cell-ranger/late…
Answer: Methods to analyse structural similarity: co-evolution vs convergence
by
Joe
22k
Without historical data (ancient DNA) there's no way to ever really know this for certain. The best we can do is make inferences based on t…
Answer: vcf multisample
by
Pierre Lindenbaum
166k
eg : https://ega-archive.org/datasets/EGAD50000001683 > Merged VCF file from sporadic Meniere disease cohort (found using https://dat…
Comment: Genome Assembly QC from BAM files
by
GenoMax
153k
Since this saga has been on going for a long time, it will be helpful to add a comment as to how you finally got to this point of what seem…
Comment: Methods to analyse structural similarity: co-evolution vs convergence
by
dthorbur
★ 3.1k
A few comments. 1. Coevolution of a trait between 2 organisms can end up with a convergent structure with another organism. It's not e…
Comment: Genome Assembly QC from BAM files
by
SomeOne
▴ 240
Thank you. Based on the description these two look really what i wanted to see.
Comment: miRNA low mapping ratings
by
i.sudbery
22k
Also, can you just clarify that the output above is from cutadapt or form miRDeep2?
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