0
votes
4
replies
5.6k
views
6 follow
0
votes
2
replies
6.5k
views
updated 14 months ago by
xoaib
•
0
•
written 9.2 years ago by
severalorks
▴
110
0
votes
1
reply
1.3k
views
3
votes
5
replies
1.9k
views
14 months ago by
hamid.gaikani
▴
80
0
votes
1
reply
685
views
updated 14 months ago by
Zhenyu Zhang
★
1.3k
•
written 14 months ago by
Beowulf
•
0
2
votes
2
replies
784
views
0
votes
6
replies
918
views
14 months ago by
berndmann
•
0
2
votes
1
reply
498
views
0
votes
1
reply
434
views
0
votes
2
replies
854
views
14 months ago by
learner__lin2003
•
0
0
votes
0
replies
455
views
14 months ago by
Physalia-courses
★
2.6k
0
votes
2
replies
911
views
14 months ago by
markus.glass
▴
40
4
votes
4
replies
1.1k
views
3
votes
1
reply
1.3k
views
updated 14 months ago by
colindaven
7.9k
•
written 14 months ago by
Quanyu
▴
20
0
votes
0
replies
368
views
4
votes
4
replies
1.2k
views
updated 14 months ago by
Mensur Dlakic
★
30k
•
written 14 months ago by
QX
▴
80
2
votes
5
replies
1.3k
views
updated 14 months ago by
andres.firrincieli
3.9k
•
written 14 months ago by
zjhennin
•
0
5
votes
0
replies
1.5k
views
updated 14 months ago by
Ram
45k
•
written 14 months ago by
Ming Tommy Tang
★
4.7k
0
votes
1
reply
746
views
12
votes
3
replies
1.3k
views
0
votes
2
replies
901
views
14 months ago by
nwerry
•
0
0
votes
2
replies
949
views
13 months ago by
eebloom
▴
110
0
votes
0
replies
361
views
0
votes
3
replies
842
views
0
votes
1
reply
623
views
updated 14 months ago by
GenoMax
153k
•
written 14 months ago by
learner__lin2003
•
0
4
votes
9
replies
1.9k
views
14 months ago by
jayeshkumarsundaram
▴
10
0
votes
2
replies
692
views
13 months ago by
4732b159
•
0
0
votes
1
reply
1.3k
views
0
votes
1
reply
1.2k
views
updated 14 months ago by
白
•
0
•
written 2.1 years ago by
sumitra.20
•
0
1
vote
4
replies
1.2k
views
updated 13 months ago by
swbarnes2
15k
•
written 14 months ago by
laura.bertola
•
0
1
vote
6
replies
1.3k
views
0
votes
0
replies
493
views
0
votes
2
replies
672
views
14 months ago by
alba
•
0
0
votes
1
reply
807
views
updated 14 months ago by
Zhenyu Zhang
★
1.3k
•
written 14 months ago by
tomas4482
▴
430
0
votes
2
replies
721
views
14 months ago by
jet
•
0
0
votes
1
reply
651
views
3
votes
2
replies
952
views
0
votes
0
replies
518
views
updated 14 months ago by
Ram
45k
•
written 14 months ago by
Manuel Sokolov Ravasqueira
▴
110
2
votes
1
reply
981
views
0
votes
2
replies
993
views
0
votes
0
replies
430
views
14 months ago by
Chris
▴
360
4
votes
7
replies
2.1k
views
updated 14 months ago by
Ram
45k
•
written 3.7 years ago by
Confused_human
▴
30
0
votes
1
reply
715
views
14 months ago by
mail2steff
▴
70
0
votes
0
replies
431
views
0
votes
0
replies
474
views
14 months ago by
Physalia-courses
★
2.6k
3
votes
2
replies
4.3k
views
updated 14 months ago by
hewm2008
▴
50
•
written 4.5 years ago by
sankar2004
▴
60
5
votes
3
replies
1.0k
views
0
votes
2
replies
977
views
0
votes
0
replies
401
views
0
votes
0
replies
407
views
Recent Votes
Recent Locations •
All
Sweden, just now
Germany, just now
Austria, 1 minute ago
Sheffield, UK, 14 minutes ago
United Kingdom, 18 minutes ago
Hong Kong, 18 minutes ago
Leipzig, Germany, 19 minutes ago
Recent Awards •
All
Popular Question to
ecSeq Bioinformatics
▴
20
Popular Question to
Stele
•
0
Popular Question to
geocarvalho
▴
400
Popular Question to
Anjan
▴
850
Popular Question to
otieno43
▴
40
Popular Question to
san96
▴
190
Recent Replies
Comment: Understanding the relationship between hhr and a3m output of HHblits
by
Joe
22k
Nice detective work! :)
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
•
0
The SRA accession is SRX12366993
Comment: SNP calling with bacterial assembled genome
by
GenoMax
153k
> After I find some differences between the assembly and the reference, how can I decide confident variants without the depth?
Don't think…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
Philipp Bayer
8.9k
Did you check whether your species' fasta file is named correctly? From memory Orthofinder will pull in files ending in .fa and .fasta in t…
Comment: SNP calling with bacterial assembled genome
by
yesquokkan
•
0
Thank you for your kind answer. May I ask some following questions.
However, I only have full access to assembled genomes, and some to ra…
Answer: Understanding the relationship between hhr and a3m output of HHblits
by
Andrew
▴
10
Ok after reviewing the HHBlits source code I realize the issue is that the hhr file and the a3m file contain apples and oranges, and it doe…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
saamhasan55
▴
10
I checked the file and it's definitely proteins. I had previously run BUSCO on protein mode on the same file and got >90% completeness. I r…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
saamhasan55
▴
10
I ran BUSCO on the predicted proteome in protein mode and got >91% completeness. I also removed multiple isoforms from the same gene.
Comment: Help with Model
by
Stele
•
0
Hey, thanks for the reply! I think I didn't make the question very understandable. I do know how to code for this, the wall I have hit is *…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
Mensur Dlakic
★
30k
Not enough detail to make a definitive recommendation. Since this should not happen, an educated guess is that you are doing something wron…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
Michael
56k
A reason may be that your gene prediction is off. Did you run BUSCO on your predicted proteome? If the gene prediction is ok, then you shou…
Comment: Genome Assembly QC from BAM files
by
GenoMax
153k
> Can you comment on these, If they look good ?
More importantly how do these assemblies compare (contiguous/number of chromosomes/size) t…
Comment: TOPMed Imputation - More than 10000 allele switches
by
Qianshu
•
0
Hi,
I have the same error with you, have you sorted it out yet? If you have, could you please share some?
Thank you!
Comment: Genome Assembly QC from BAM files
by
SomeOne
▴
240
hello @colindaven
I ran the INSPECTOR tool you mentioned on the genome assemblies. Below are stats for one of my sample (othere were simi…
Traffic: 3554 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6