Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
121,925 results • Page
86 of 2439
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
407
views
Are there tools for protein family synteny searches?
pfam
interpro
synteny
14 months ago by
hopf
▴ 10
4
votes
7
replies
2.3k
views
COBS Indexing genomes - understand the output
indexing
cobs
genomes
COBS
updated 14 months ago by
Jianshu_Zhao
• 0 • written 3.3 years ago by
davidmaimoun
▴ 50
3
votes
0
replies
921
views
News:
Now available for download: New, more efficient BLAST core_nt database
NCBI
BLAST
14 months ago by
PeterC_NCBI
▴ 520
5
votes
6
replies
1.4k
views
Finding novel transcripts
blastx
transcripts
updated 14 months ago by
biofalconch
★ 1.3k • written 14 months ago by
analyst
▴ 70
4
votes
7
replies
1.5k
views
Unexpected strandness using salmon
salmon
strandness
STAR
RNAseq
DTU
updated 14 months ago by
ATpoint
89k • written 14 months ago by
zea
▴ 10
2
votes
10
replies
2.9k
views
bcl-convert cannot create output directory structure at the path specified
illumina
reads
bcl-convert
index
demultiplexing
13 months ago by
giulia.trauzzi
▴ 30
2
votes
1
reply
615
views
How to tell if a proteome is estimated or measured?
genome
proteome
updated 14 months ago by
dthorbur
★ 3.1k • written 14 months ago by
dec986
▴ 380
0
votes
2
replies
2.0k
views
Pseudobulk for scRNA-seq: sum or mean?
scRNA-seq
pseudobulk
updated 14 months ago by
Ming Tommy Tang
★ 4.7k • written 14 months ago by
adele
• 0
3
votes
4
replies
1.1k
views
How can I create an aesthetic gene neighborhood diagram from CSV data to showcase synteny?
R
Plot
Diagram
Visualization
14 months ago by
Rohan
▴ 40
0
votes
1
reply
523
views
Detectection of premature termination codons from RNA-Seq data
RNA-seq
updated 14 months ago by
Ram
45k • written 14 months ago by
LlamaZombie
• 0
0
votes
0
replies
338
views
Plotting phenotype vs allele
GWAS
14 months ago by
MiauMiau
• 0
2
votes
4
replies
993
views
Tools for estimating telomere length
telomere
cancer
updated 13 months ago by
clealk
▴ 80 • written 14 months ago by
chictu
▴ 10
1
vote
1
reply
655
views
How to get the list of species in biomart plant?
biomart
RNA-seq
plant
updated 14 months ago by
Ram
45k • written 14 months ago by
raheleh
• 0
0
votes
0
replies
464
views
HPV virus in human genome
HPV
gatk
pathseq
cancer
14 months ago by
chictu
▴ 10
3
votes
3
replies
924
views
Oxford Nanopore Sequencing Output Related
Oxford-Nanopore
updated 14 months ago by
Ram
45k • written 14 months ago by
Bhavya
• 0
0
votes
1
reply
858
views
DESeq2 on a complex design
RNA-seq
DESeq2
updated 14 months ago by
BioinfGuru
★ 2.1k • written 14 months ago by
Chengrui
• 0
0
votes
0
replies
447
views
Visium spatial transcriptomics slide with two tissue samples
Spatial-Transcriptomics
Visum
updated 14 months ago by
Ram
45k • written 14 months ago by
Chirag Nepal
★ 2.4k
0
votes
2
replies
1.0k
views
Alternative Visualization Methods for CLANS Output: Using Cytoscape or Other Tools
Visualization
CLANS
Cytoscape
Network
14 months ago by
Rohan
▴ 40
3
votes
3
replies
1.1k
views
Samtools flagstat output said there is zero paired-reads in scRNA-seq bam file
samtools
flagstat
scRNAseq
updated 14 months ago by
swbarnes2
15k • written 14 months ago by
juyeonlee
• 0
2
votes
3
replies
3.3k
views
Downloading 1000genome phase 3 data in 38 build
1000genomes
updated 14 months ago by
nareshmvr
▴ 10 • written 4.6 years ago by
AVA
▴ 40
2
votes
2
replies
788
views
Discrepancy in HISAT2 Alignment Rates for Paired-End vs. Single-End Reads
NGS
HISAT2
RNA-seq
alignment
14 months ago by
Ujjawal
• 0
0
votes
0
replies
421
views
Copy number: summarize segmented regions into chromosome arms
chromosome-arm
copy-number
updated 14 months ago by
Ram
45k • written 14 months ago by
Ezhil La
▴ 40
4
votes
6
replies
1.9k
views
How to check if all read names are paired properly in paired end fastq.gz files?
samtools
illumina
paired-end
updated 14 months ago by
LChart
5.1k • written 14 months ago by
DNAngel
▴ 260
0
votes
0
replies
501
views
SMART-seq normalizarion and integration
SMART-seq
single-nuclei
normalization
RNA-seq
single-cell
14 months ago by
vigbr
▴ 20
0
votes
0
replies
298
views
results comparison from KARGA, kma and amr-meta
KARGA
amr-meta
kma
updated 14 months ago by
Ram
45k • written 14 months ago by
minoonasr
• 0
0
votes
4
replies
1.3k
views
PolyA in FastQC results from EM-Seq?
fastqc
wgbs
polya
methylation
emseq
13 months ago by
Watermelon
▴ 20
2
votes
1
reply
972
views
How is the observed frequencies obtained via HHBlits?
DRNApred
Protein
HHBlits
HMM
updated 14 months ago by
Mensur Dlakic
★ 30k • written 14 months ago by
jet
• 0
0
votes
0
replies
334
views
filtering blastx output file
blastx
query
14 months ago by
analyst
▴ 70
0
votes
2
replies
605
views
Where can I find mutation status in GEO?
GEO
14 months ago by
Nona
▴ 90
0
votes
1
reply
500
views
Empty VCF after Strelka
strelka
snp
wgs
strelka2
updated 14 months ago by
Pierre Lindenbaum
166k • written 14 months ago by
isMM
• 0
36
votes
12
replies
3.9k
views
11 follow
Forum:
How to improve a bioinformatics study and paper so that it is not considered "too preliminary" by publishers and journals?
DEG
journal
updated 14 months ago by
Matthias Zepper
5.1k • written 14 months ago by
egascon
▴ 60
1
vote
1
reply
480
views
Using BLASTp with Custom Substitution Matrices
BLASTp
updated 14 months ago by
biofalconch
★ 1.3k • written 14 months ago by
H.Hasani
★ 1.0k
0
votes
0
replies
371
views
Person neoplasm cancer status
tumor
neoplasm
updated 14 months ago by
Ram
45k • written 14 months ago by
maryak
▴ 20
4
votes
6
replies
1.3k
views
Use LiftOver without knowing reference Fasta of used vcf file
vcf
updated 14 months ago by
GenoMax
153k • written 14 months ago by
Lukas
▴ 130
0
votes
0
replies
476
views
How to convert Illumina SNP ids having mappings to multiple RSID in loci to rsid file ?
23me
illumina
conversion
GSA3.0
14 months ago by
vasank1958
• 0
3
votes
1
reply
681
views
Proteomes: measured or predicted from genomes/transcriptomes?
genome
proteome
updated 14 months ago by
Mensur Dlakic
★ 30k • written 14 months ago by
dec986
▴ 380
3
votes
11
replies
3.9k
views
Rosetta make_fragments.pl fails: "Cannot initialize readdb for nr database"
software-error
nr
rosetta
updated 14 months ago by
Noora
• 0 • written 5.4 years ago by
Alex_I
• 0
2
votes
1
reply
750
views
How to choose cells that co-express several genes with scanpy?
scanpy
scRNA-seq
single-cell
updated 14 months ago by
LChart
5.1k • written 14 months ago by
bioinfo
▴ 160
4
votes
8
replies
1.6k
views
featureCounts output
macs2
featureCounts
updated 14 months ago by
rfran010
★ 1.6k • written 14 months ago by
QX
▴ 80
2
votes
4
replies
890
views
Replace SB flag by PASS in my VCF file
VCF
14 months ago by
ManuelDB
▴ 110
0
votes
0
replies
751
views
Job:
PhD Position "A Bioinformatics Approach to Analyzing Epistatic Interactions in Enzymes using Long-read Sequencing Data"
Machine-Learning
Deep-Mutational-Scanning
Oxford-Nanopore
updated 14 months ago by
Ram
45k • written 14 months ago by
funcgen
▴ 10
0
votes
0
replies
904
views
Job:
Request for Proposals: Amazon Web Services (AWS) Web Development & Bioinformatics Consultant
AWS
FFAR
updated 14 months ago by
Ram
45k • written 14 months ago by
ffarhr
• 0
2
votes
6
replies
1.2k
views
Selecting top signature score from signatures with different distributions
R
classification
distributions
updated 14 months ago by
LChart
5.1k • written 14 months ago by
yura.grabovska
▴ 820
0
votes
1
reply
604
views
How to download the mutational signatures for TCGA?
mutational-signature
TCGA
updated 14 months ago by
LChart
5.1k • written 14 months ago by
Camelia
• 0
6
votes
11
replies
2.0k
views
sequenceTubeMap input files
sequencetubemap
vg
updated 13 months ago by
Jordan M Eizenga
▴ 760 • written 14 months ago by
Mayank
▴ 10
2
votes
5
replies
1.2k
views
Trimmomatic in windows
windows
16S
trimmomatic
updated 14 months ago by
GenoMax
153k • written 14 months ago by
Clíona
• 0
1
vote
4
replies
917
views
high no_feature in htseq
RNA-seq
htseq-count
Quantification
14 months ago by
Srujana
▴ 10
10
votes
6
replies
3.4k
views
meaning of "primary alignment" in samtools
samtools
updated 14 months ago by
i.sudbery
22k • written 14 months ago by
Francois Piumi
▴ 70
0
votes
2
replies
569
views
bacterial microRNA data retrieval
miRNA
Bacteria
sRNA
14 months ago by
praddyumnapdm
• 0
0
votes
1
reply
671
views
How do I Download Metagenomics Data from NCBI or EBI with its Metadata?
metagenomics
NCBI
updated 14 months ago by
Ram
45k • written 14 months ago by
John
▴ 10
121,925 results • Page
86 of 2439
Recent Votes
Comment: Genome Assembly QC from BAM files
Answer: Understanding the relationship between hhr and a3m output of HHblits
Downsample BAM file to specific amount of reads
Answer: Downsample BAM file to specific amount of reads
Comment: SNP calling with bacterial assembled genome
Answer: Understanding the relationship between hhr and a3m output of HHblits
C: Annotation for gene-level analysis after stringtie
Recent Locations •
All
United Kingdom,
2 minutes ago
Hong Kong,
3 minutes ago
Sweden,
5 minutes ago
Austria/Vienna,
9 minutes ago
United States,
10 minutes ago
China,
11 minutes ago
Sheffield, UK,
16 minutes ago
Recent Awards •
All
Great Question
to
pedro.silvestre
• 0
Popular Question
to
ecSeq Bioinformatics
▴ 20
Popular Question
to
tatsispolychronis
• 0
Popular Question
to
Stele
• 0
Popular Question
to
geocarvalho
▴ 400
Popular Question
to
Anjan
▴ 850
Popular Question
to
otieno43
▴ 40
Recent Replies
Comment: Help with Model
by
i.sudbery
22k
There is no way to "code" this directly. Your problem is mathematics, not programming. Standard stochastic models deal with a set of sta…
Answer: How to overcome OS return value: 4 with SPAdes
by
GenoMax
153k
I am going to hazard a guess that the spaces and email address in file path (you may want to redact your email from post above) is causing …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
153k
Are you trying to reproduce the assembly result? If not, the complete assembly is already available at NCBI: https://www.ncbi.nlm.nih.gov…
Comment: Genome Assembly QC from BAM files
by
GenoMax
153k
This may be another example where the assembly you obtained may be better than an existing one .. certainly as far as the accessory chromos…
Comment: Genome Assembly QC from BAM files
by
SomeOne
▴ 240
There are some reference assemblies. Some close ones are at chromosome level but exact reference are not chromosome level assemblies. Othe…
Comment: Understanding the relationship between hhr and a3m output of HHblits
by
Joe
22k
Nice detective work! :)
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
The SRA accession is SRX12366993
Comment: SNP calling with bacterial assembled genome
by
GenoMax
153k
> After I find some differences between the assembly and the reference, how can I decide confident variants without the depth? Don't think…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
Philipp Bayer
8.9k
Did you check whether your species' fasta file is named correctly? From memory Orthofinder will pull in files ending in .fa and .fasta in t…
Comment: SNP calling with bacterial assembled genome
by
yesquokkan
• 0
Thank you for your kind answer. May I ask some following questions. However, I only have full access to assembled genomes, and some to ra…
Answer: Understanding the relationship between hhr and a3m output of HHblits
by
Andrew
▴ 10
Ok after reviewing the HHBlits source code I realize the issue is that the hhr file and the a3m file contain apples and oranges, and it doe…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
saamhasan55
▴ 10
I checked the file and it's definitely proteins. I had previously run BUSCO on protein mode on the same file and got >90% completeness. I r…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
saamhasan55
▴ 10
I ran BUSCO on the predicted proteome in protein mode and got >91% completeness. I also removed multiple isoforms from the same gene.
Comment: Help with Model
by
Stele
• 0
Hey, thanks for the reply! I think I didn't make the question very understandable. I do know how to code for this, the wall I have hit is *…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
Mensur Dlakic
★ 30k
Not enough detail to make a definitive recommendation. Since this should not happen, an educated guess is that you are doing something wron…
Traffic: 3401 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6