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121,925 results • Page
87 of 2439
Sort: Rank
Rank
Views
Votes
Replies
2
votes
5
replies
895
views
Transcription factors associated with Differentially Expressed Genes
transcription
enrichment
14 months ago by
kamalika
• 0
2
votes
1
reply
596
views
GATK4 VariantAnnotator deletes variants
GATK4
updated 14 months ago by
Pierre Lindenbaum
166k • written 14 months ago by
ManuelDB
▴ 110
0
votes
4
replies
808
views
filtering blastx output file
blastx
query
filtration
coverage
14 months ago by
analyst
▴ 70
0
votes
0
replies
399
views
TCGA methylation analysis
Methylation
14 months ago by
ali
• 0
0
votes
0
replies
373
views
Heterozygous SNPs Allele Balance Threshold
SNPs
Genomics
WES
Allele
updated 14 months ago by
Ram
45k • written 14 months ago by
menyawino
• 0
5
votes
4
replies
1.5k
views
Seeking Advice on Multisample Variant Calling Pipeline with BWA-MEME and GATK DRAGEN Mode
GATK
Variant-Calling
dragen
bwa
14 months ago by
George
▴ 20
2
votes
1
reply
576
views
Filter vcf file by position AND alternative allele
bcftools
vcf
filter
updated 14 months ago by
zx8754
12k • written 14 months ago by
_quantum_girl_
▴ 60
2
votes
3
replies
7.3k
views
DESeq2 vst function error
DESeq2
RNA-Seq
R
normalization
updated 14 months ago by
DareDevil
★ 4.4k • written 5.1 years ago by
lenC_biotecLover
▴ 90
1
vote
5
replies
3.1k
views
Get position in GRCh38 from rsid
snp
rsid
location
updated 14 months ago by
Philipp Bayer
8.9k • written 14 months ago by
_quantum_girl_
▴ 60
2
votes
5
replies
1.2k
views
Same sample and reference genome, different number of reads
STARsolo
Single-cell
RNAseq
updated 14 months ago by
rfran010
★ 1.6k • written 14 months ago by
Nicholas
▴ 20
0
votes
0
replies
316
views
Error Code 104 in STAR Alignment
STAR
14 months ago by
deleonalyssa289
• 0
0
votes
1
reply
563
views
How to Subset a Custom BLAST Database for Specific Genes of Interest?
BLASTp
BLAST
14 months ago by
samuel.himes
• 0
0
votes
4
replies
964
views
Determining library prep: rRNA depletion or mRNA enrichment
rrna
library
mrna
updated 14 months ago by
rfran010
★ 1.6k • written 14 months ago by
Synanth
• 0
8
votes
5
replies
23k
views
Herald:
The Biostar Herald for Monday, July 22, 2024
herald
updated 13 months ago by
LChart
5.1k • written 14 months ago by
Biostar
3.6k
1
vote
2
replies
709
views
Remove bacterial and protoza from Kraken2 EuPathDB
Database
Kraken2
EuPathDB
14 months ago by
Christopher
▴ 10
0
votes
0
replies
354
views
very basic metascape raw data query
mRNA
miRNA
metascape
updated 14 months ago by
Ram
45k • written 14 months ago by
Yvonne
• 0
0
votes
0
replies
315
views
Web server/tool for structural motif prediction on multiple proteins?
pdb
updated 14 months ago by
Ram
45k • written 14 months ago by
pl559
• 0
0
votes
1
reply
1.1k
views
AutoDock Tools: problems with "choose torsion in currently selected residues"
autodocktools
docking
updated 14 months ago by
GenoMax
153k • written 2.1 years ago by
Josefina
• 0
1
vote
5
replies
1.4k
views
Low "assigned alignments" in output and high "Unassigned_NoFeatures" in summary
featureCounts
updated 14 months ago by
swbarnes2
15k • written 14 months ago by
2406691063
• 0
0
votes
0
replies
319
views
Length of base-pairing required in Argonautes
structural-biology
argonaute
updated 14 months ago by
Ram
45k • written 14 months ago by
Ali
• 0
0
votes
0
replies
506
views
Clarification on ConClave Scoring and KMA Compatibility with Nanopore Reads
kma
nanopore
alignment
14 months ago by
Dim
• 0
4
votes
5
replies
1.7k
views
DESeq2 results vs. shrinkage results
Shrinkage
DESeq2
Sequencing
RNA
updated 14 months ago by
i.sudbery
22k • written 14 months ago by
hagl
▴ 20
0
votes
1
reply
496
views
how to visualize Geno Ontology classification
Gene-ontology
updated 14 months ago by
bk11
★ 3.1k • written 14 months ago by
fati90sellam90
• 0
0
votes
1
reply
503
views
Extract the Variables with the Most Influence on the Ordination in an LDA
biostatistics
LDA
r
updated 14 months ago by
Pierre Lindenbaum
166k • written 14 months ago by
Mgs3
▴ 30
0
votes
2
replies
845
views
Building a Kraken2 Database
Taxonomy
Kraken2
Metagenomics
updated 14 months ago by
Ram
45k • written 14 months ago by
Ahiad Chen Zion
• 0
4
votes
2
replies
1.2k
views
Remove the venn diagram fill color
R
ggplot2
Venn
14 months ago by
G.S
▴ 60
1
vote
3
replies
722
views
samtools sort
samtools
RNA-seq
updated 14 months ago by
ATpoint
89k • written 14 months ago by
Srujana
▴ 10
1
vote
1
reply
852
views
batchtools_slurm job setting with seurat
seurat
HPC
Slurm
updated 14 months ago by
DBScan
▴ 530 • written 14 months ago by
marco.barr
▴ 180
0
votes
1
reply
623
views
Find closest taxonomic ID from a list of tax IDs
taxonomy
ncbi
updated 14 months ago by
GenoMax
153k • written 14 months ago by
noodle
▴ 650
10
votes
6
replies
1.4k
views
What should be the term, "insert" or "insert size"?
TLEN
sequencing
alignment
updated 14 months ago by
Ram
45k • written 14 months ago by
Anisur Rahman
▴ 80
2
votes
1
reply
505
views
Regarding correlation analysis
correlation
updated 14 months ago by
Ram
45k • written 14 months ago by
Stuti
• 0
0
votes
0
replies
438
views
save.rnb.set warnings when trying to save rnb.set
RnBeads
Methylation
Bioconductor
14 months ago by
hayleyw
• 0
0
votes
1
reply
659
views
How do I use msigdb to annotate the single cell data?
msigdb
single-cell
updated 14 months ago by
Ram
45k • written 14 months ago by
biotrekker
▴ 110
0
votes
2
replies
1.2k
views
Bulk RNA seq analysis on multiple conditions (4)
RNA-seq
updated 14 months ago by
Ram
45k • written 14 months ago by
SO-YEON
• 0
2
votes
3
replies
1.7k
views
Best way of getting a good introduction with bioconductor and biopyhton
bioconductor
R
biopython
updated 14 months ago by
schlogl
▴ 180 • written 4.3 years ago by
ashwing.kofficial
▴ 10
0
votes
0
replies
408
views
GTEx files, single tissue cis-eQTLs
eqtl
GTEx
updated 14 months ago by
Ram
45k • written 14 months ago by
dddyyylll
• 0
0
votes
2
replies
612
views
CpG island identification
CpG-islands
14 months ago by
oluwoleolufunke
• 0
1
vote
3
replies
785
views
retrieve genomic positions and chromosome number for a list of genes
position
seq
genomic
RNA
updated 14 months ago by
Pierre Lindenbaum
166k • written 14 months ago by
Fatemeh
▴ 50
1
vote
3
replies
920
views
TB-PROFILER DELLY ISSUE
DELLY
TB-PROFILER
updated 9 months ago by
Jody Phelan
▴ 10 • written 14 months ago by
Bhawna
• 0
1
vote
1
reply
610
views
When to use Sam Sort on a Bam file?
Sam
Bam
Sort
File
Collate
updated 14 months ago by
Pierre Lindenbaum
166k • written 14 months ago by
Arthur
▴ 10
0
votes
1
reply
905
views
RepeatMasker format in SQuIRE Fetch
SQuIRE
RepeatMasker
updated 14 months ago by
Bioinformatics_16
• 0 • written 2.1 years ago by
Javier
• 0
0
votes
7
replies
2.0k
views
Could not locate a HISAT2 index corresponding to basename
HISAT2
Grch38
updated 14 months ago by
GenoMax
153k • written 14 months ago by
altobialmunthir
• 0
1
vote
1
reply
725
views
Different Size VCF
GATK
VCF
compression
updated 14 months ago by
Pierre Lindenbaum
166k • written 14 months ago by
Sd
• 0
1
vote
1
reply
896
views
Gene mapping issue using ClusterProfiler
clusterProfiler
14 months ago by
alicecol
▴ 20
4
votes
4
replies
2.5k
views
looking for 1000g hg38 reference data to anchor with my genomic data to plot the principal components
gwas
hg38
principal-components
updated 14 months ago by
chrchang523
11k • written 14 months ago by
nicole
▴ 30
0
votes
1
reply
579
views
Array vs WGBS: Can't I use a package designed for array data for WGBS or any other data?
WGBS
methylation
Array
7 months ago by
Burak Özyürek
▴ 10
3
votes
4
replies
1.2k
views
evolutionary trees of sepecies
species
evolutionary
updated 14 months ago by
dthorbur
★ 3.1k • written 14 months ago by
zhu
• 0
6
votes
0
replies
860
views
News:
Changes coming to NCBI Web blast in August 2024
nt
core_nt
blast
NCBI
WWWBLAST
14 months ago by
GenoMax
153k
0
votes
0
replies
853
views
Forum:
Advice on Entering the field of Bioinformatics in Canada
career
updated 14 months ago by
Ram
45k • written 14 months ago by
ubhimanpreet
• 0
1
vote
0
replies
397
views
Unusual indel peaks in bam file
RNA-seq
updated 14 months ago by
ATpoint
89k • written 14 months ago by
boczniak767
▴ 880
121,925 results • Page
87 of 2439
Recent Votes
Answer: How to overcome OS return value: 4 with SPAdes
Answer: How to overcome OS return value: 4 with SPAdes
Answer: How to overcome OS return value: 4 with SPAdes
Comment: Genome Assembly QC from BAM files
Answer: Understanding the relationship between hhr and a3m output of HHblits
Downsample BAM file to specific amount of reads
Answer: Downsample BAM file to specific amount of reads
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Recent Replies
Comment: How to overcome OS return value: 4 with SPAdes
by
marongiu.luigi
▴ 760
Yep, that was it. I was using a G:-sync folder... Thank you.
Comment: Help with Model
by
i.sudbery
22k
There is no way to "code" this directly. Your problem is mathematics, not programming. Standard stochastic models deal with a set of sta…
Answer: How to overcome OS return value: 4 with SPAdes
by
GenoMax
153k
I am going to hazard a guess that the spaces and email address in file path (you may want to redact your email from post above) is causing …
Comment: Hifiasm is getting killed while trying to assemble a genome
by
GenoMax
153k
Are you trying to reproduce the assembly result? If not, the complete assembly is already available at NCBI: https://www.ncbi.nlm.nih.gov…
Comment: Genome Assembly QC from BAM files
by
GenoMax
153k
This may be another example where the assembly you obtained may be better than an existing one .. certainly as far as the accessory chromos…
Comment: Genome Assembly QC from BAM files
by
SomeOne
▴ 240
There are some reference assemblies. Some close ones are at chromosome level but exact reference are not chromosome level assemblies. Othe…
Comment: Understanding the relationship between hhr and a3m output of HHblits
by
Joe
22k
Nice detective work! :)
Comment: Hifiasm is getting killed while trying to assemble a genome
by
pranavdatar01
• 0
The SRA accession is SRX12366993
Comment: SNP calling with bacterial assembled genome
by
GenoMax
153k
> After I find some differences between the assembly and the reference, how can I decide confident variants without the depth? Don't think…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
Philipp Bayer
8.9k
Did you check whether your species' fasta file is named correctly? From memory Orthofinder will pull in files ending in .fa and .fasta in t…
Comment: SNP calling with bacterial assembled genome
by
yesquokkan
• 0
Thank you for your kind answer. May I ask some following questions. However, I only have full access to assembled genomes, and some to ra…
Answer: Understanding the relationship between hhr and a3m output of HHblits
by
Andrew
▴ 10
Ok after reviewing the HHBlits source code I realize the issue is that the hhr file and the a3m file contain apples and oranges, and it doe…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
saamhasan55
▴ 10
I checked the file and it's definitely proteins. I had previously run BUSCO on protein mode on the same file and got >90% completeness. I r…
Comment: Orthofinder Not Mapping to Any Orthogroups
by
saamhasan55
▴ 10
I ran BUSCO on the predicted proteome in protein mode and got >91% completeness. I also removed multiple isoforms from the same gene.
Comment: Help with Model
by
Stele
• 0
Hey, thanks for the reply! I think I didn't make the question very understandable. I do know how to code for this, the wall I have hit is *…
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