0
votes
0
replies
26
views
0
votes
1
reply
48
views
0
votes
0
replies
54
views
updated 49 minutes ago by
Ram
43k
•
written 8 hours ago by
deepak180001
•
0
0
votes
1
reply
76
views
0
votes
1
reply
72
views
0
votes
6
replies
277
views
0
votes
1
reply
84
views
0
votes
0
replies
65
views
0
votes
0
replies
62
views
14 hours ago by
Javier
•
0
0
votes
1
reply
59
views
updated 20 minutes ago by
Thanujay S
•
0
•
written 15 hours ago by
yahn
•
0
0
votes
0
replies
60
views
0
votes
0
replies
63
views
0
votes
2
replies
121
views
updated 15 hours ago by
GenoMax
142k
•
written 16 hours ago by
ahmad.sajad4541
•
0
0
votes
0
replies
58
views
17 hours ago by
marco.barr
▴
90
0
votes
0
replies
80
views
0
votes
2
replies
122
views
0
votes
0
replies
73
views
3
votes
5
replies
193
views
2
votes
3
replies
192
views
0
votes
0
replies
89
views
0
votes
0
replies
84
views
3
votes
8
replies
6.5k
views
7 follow
updated 1 day ago by
Sd
•
0
•
written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
146
views
0
votes
1
reply
172
views
updated 1 day ago by
Chris Dean
▴
390
•
written 1 day ago by
sovrappensiero
▴
90
2
votes
6
replies
302
views
0
votes
1
reply
130
views
updated 1 day ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
Arun Sai Kumar
•
0
0
votes
0
replies
94
views
0
votes
1
reply
215
views
1
vote
1
reply
132
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
marco.barr
▴
90
0
votes
0
replies
83
views
0
votes
0
replies
94
views
0
votes
0
replies
91
views
2 days ago by
James
▴
10
0
votes
1
reply
578
views
1
vote
3
replies
213
views
updated 21 hours ago by
barslmn
★
2.1k
•
written 2 days ago by
poordumbsillyidiot
•
0
0
votes
1
reply
198
views
0
votes
0
replies
93
views
0
votes
0
replies
117
views
0
votes
1
reply
138
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
ernestine.kubi
•
0
0
votes
0
replies
102
views
1
vote
2
replies
239
views
2 days ago by
rianna.collins
•
0
0
votes
1
reply
177
views
0
votes
0
replies
141
views
0
votes
1
reply
560
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
Dr Huma Naz
•
0
0
votes
5
replies
353
views
1
vote
1
reply
224
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
Jonathan Yoou
▴
60
1
vote
2
replies
280
views
1
vote
3
replies
271
views
0
votes
1
reply
173
views
updated 2 days ago by
Adam
▴
30
•
written 3 days ago by
Ahiad Chen Zion
•
0
0
votes
0
replies
126
views
0
votes
0
replies
121
views
updated 3 days ago by
Ram
43k
•
written 3 days ago by
Alexandros
•
0
Recent Votes
Recent Locations •
All
United States, 6 minutes ago
India, 8 minutes ago
Bangladesh, 8 minutes ago
Karachi, 23 minutes ago
Chennai, India, 24 minutes ago
India, 27 minutes ago
The Netherlands, 30 minutes ago
Recent Awards •
All
Popular Question to
Thanujay S
•
0
Popular Question to
SHN
▴
40
Popular Question to
Rob
▴
170
Popular Question to
curious
▴
750
Popular Question to
M.
▴
30
Student to
carolofharvest
▴
30
Recent Replies
Comment: Extracting mutation status from MAF files - TCGA
by
Thanujay S
•
0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool
by
Ruqaiya
•
0
I tried the 2nd option only.
I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
Comment: filtering before dada2
by
GenoMax
142k
> I encountered a significant decrease in the percentage of merged reads.
You can check with `bbmerge.sh` from BBMap suite to see how many…
Comment: HCL database download
by
GenoMax
142k
Isn't the download link available above the plot: http://bis.zju.edu.cn/HCL/data/DGE/Adult-Transverse-Colon1_dge.txt.gz
Comment: fastq screen aligner no specified.
by
GenoMax
142k
You need to change this configuration file to point it to the location where the aligner executable can be found.
So as an example followi…
Answer: Design matrix Differential expression analysis
by
Gordon Smyth
★
7.1k
The expression levels do not change but the way that you have parametrized the expression levels does change.
The two design matrices give…
Comment: The GDC Legacy Archive is retiring soon.
by
lcordeiro
▴
40
Hi Zhenyu, do you happen to know how I can download metadata for some of the legacy files? I downloaded several IDATs from the legacy data …
Answer: Force PLINK2 to neglect chrX as the sex chromosome
by
chrchang523
10k
(cross-posted from https://groups.google.com/g/plink2-users/c/Qphx_6BpPII )
You need to use --chr-set, not --allow-extra-chr, to specify…
Answer: Easy way to find out which allele is minor allele from bed file?
by
chrchang523
10k
This question does not make sense. If you care about allele-order "information [being] lost in downstream applications", REF/ALT is the ob…
Answer: visualize GSEA
by
bk11
★
2.4k
I have made some edits in your code basically changing the position of text and commented out the line `data$text_pos <- ifelse(data$NES > …
Comment: Differential Expression Analysis using DESeq2 in R
by
swbarnes2
14k
Pictures of code are useless. You were told to paste the code and use the 0101 button. Can you explain why you decided not to do that?
If…
Comment: Differential Expression Analysis using DESeq2 in R
by
Erina
•
0
![Here is the code I am using for the analysis][1]
[1]: /media/images/8a511904-6ae8-47f5-b647-ee15b02b
Answer: Clarification regarding SAM flags "mate reverse strand" (flag 16/0x10) and "read
by
swbarnes2
14k
In paired end sequencing, every read has a mate, and the flags all together tell you not only what is up with the read you are looking at, …
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
Mbofire
•
0
I need assistance don't know what to do next after signing up
Comment: Easy way to find out which allele is minor allele from bed file?
by
curious
▴
750
According to the link:
"When *generating* such filesets, PLINK 1.x defaults to swapping the alleles whenever A1's frequency is above (not …
Traffic: 1392 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6