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Job: Exciting 2024 Summer Internship Opportunity in Translational Genetics Arrowhead Pharmaceuticals!
intern
23 days ago by Shicheng Guo ★ 9.4k
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Job: Consultant to update a Snakemake workflow with the new Kubernetes executor plugin for Snakemake 8
Kubernetes DevOps executor AWS Snakemake
updated 11 days ago by 54k • written 11 days ago by ▴ 100
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Job: Ensembl Plants Senior Bioinformatician
ebi embl genomics ensembl
6 days ago by Ben_Ensembl ★ 2.4k
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Job: CTO/founding engineer role at Voyant Bio
engineer
3 days ago by Assaf • 0
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Job: Bioinformatics PhD position in Aarhus, Denmark
PhD Genomics Cancer
updated 17 days ago by 43k • written 19 days ago by • 0
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276
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Job: PhD in bioinformatics / computational biology
NGS Omics Evolution Aging
20 days ago by Arne.Sahm • 0
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Job: Bioinformatics Research Postdoc
RNA-Seq genome
updated 17 days ago by 43k • written 8.2 years ago by • 0
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Job: Bioinformatics/Data Science postdoc position in Aarhus, Denmark
data-science genomics postdoc
updated 23 days ago by 43k • written 6 weeks ago by • 0
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195
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Job: Ensembl Outreach Project Leader
ebi embl genomics ensembl
6 days ago by Ben_Ensembl ★ 2.4k
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Job: Full Stack Web Developer - Cambridge, UK
JavaScript Python Visualisation
written 8.4 years ago by ▴ 400
10 results • Page 1 of 1
Recent Votes
Batch effects : ComBat or removebatcheffects (limma package) ?
How to input margin to UpsetR figure
Comment: How to assign cell types after integration in scRNA
NGS forensics: how to know if data is fabricated
Answer: ChIP-seq datasets: input samples omitted?
Comment: Help understanding how KEGG Ortholog `K00004 ` has 3 ECs associated with it (EC:
A: Deeptools plotHeatmap - Maintain Order of Input BED file
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Recent Replies
Comment: What does it mean single base resolution in sequencing? by LauferVA 4.2k
Nowadays since people are use to conceptualizing technologies that sequence every base the term is counterintuitive, but not all technologi…
Comment: Fetch table from clinvar database according to a list of rsid by ashaneev07 ▴ 20
Hii... i have updated the script in python..But, still getting no data found. Actually the data is there, i have print the parsed html file…
Comment: How to assign cell types after integration in scRNA by ATpoint 82k
https://bioconductor.org/books/release/OSCA.multisample/using-corrected-values.html
Comment: Downloading full alignments from Pfam by GenoMax 141k
Not as convenient but the entire set of full alignments can be downloaded here: https://ftp.ebi.ac.uk/pub/databases/Pfam/current_release/Pf…
Comment: How many reads for WGS Sequencing? by GenoMax 141k
> What does clipped Fastq mean? Probably means that NCBI has already scanned and trimmed adapter sequencers. > both forward and revers…
Comment: How many reads for WGS Sequencing? by GenoMax 141k
You can use the default `adapters.fa` file included in the `resources` folder of [**BBMap suite**][1] (program to use is `bbduk.sh`) or a p…
Comment: How many reads for WGS Sequencing? by GenoMax 141k
Only way to find out is to try. It may work but if it is not going to then you will find that out quick (process would likely crash because…
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
Also, there is no mention of adapter sequence so which adapter sequence should i use to remove it from some other reads?
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
Also, Do you think i can reproduce at least most part of the data from the paper just on my laptop? It has 4 logical processors (Intel(R) C…
Comment: NGS forensics: how to know if data is fabricated by Philipp Bayer 8.3k
While I think this is an interesting case, I've before found cleaned 'raw' data on SRA. It happens: bioinformaticians receive the raw data,…
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
1. What does clipped Fastq mean? both forward and reverse reads in the same file? 2. Why would you remove 2000bp contigs? I feel it will gi…
Comment: How many reads for WGS Sequencing? by Ruqaiya • 0
Well, I downloaded both the reads from-[LINK][1]. Thats all i did. Thats the only thing i need to do, right? I'l try spades. [1]: http…
Comment: How to assign cell types after integration in scRNA by Francesco ▴ 10
Thanks for the fast reply.. however i had only partially understood the answer. Is correct saying that low-representation integration and b…
Answer: Can I run cellassign on samples independently if there is batch effect present? by Francesco ▴ 10
Hi! Whenever you do make independent analysis or aggregate data and analyze them, most cell type assignment tools start from raw counts to …
Comment: gvcf joint calling by zihanss • 0
Thanks for your comment, I get it now.
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