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905 results • Page
6 of 19
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News:
Training in Metagenomics Data Analysis, May 26-29,2020
training
Metagenomics
next-gen
Data-analysis
updated 11 months ago by
Ram
43k • written 4.0 years ago by
AABI
▴ 140
0
votes
0
replies
745
views
News:
The precisionFDA Truth Challenge V2 is now Live!
genome
updated 11 months ago by
Ram
43k • written 4.0 years ago by
stephens_sarah
▴ 150
2
votes
0
replies
579
views
News:
Course online - Introduction to Deep Learning; 28th September - 1st October
Deep-Learning
Python
updated 11 months ago by
Ram
43k • written 4.0 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
815
views
News:
bioinfo-core workshop at virtual ISMB 2020
conferences
ismb
updated 11 months ago by
Ram
43k • written 4.0 years ago by
Madelaine Gogol
5.3k
0
votes
0
replies
533
views
News:
International Conference on Machine learning and Cloud Computing (MLCL 2020)
Assembly
SNP
sequencing
updated 11 months ago by
Ram
43k • written 4.0 years ago by
alfiejoshua23
▴ 10
6
votes
4
replies
1.3k
views
News:
Course online - Comparative Genomics
assembly
genome
next-gen
alignment
updated 11 months ago by
Ram
43k • written 4.0 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
814
views
News:
TScourse: Introduction to GWAS (Genome-Wide Association Studies) (July 6th-10th, 2020, Crete (Greece))
PLINK
PRSice
GWAS
R
Genome
updated 11 months ago by
Ram
43k • written 4.0 years ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
846
views
News:
Online Live TScourse: Python Machine Learning in Biology (July 20th-24th, 2020)
online-course
Python
Machine-learning
updated 11 months ago by
Ram
43k • written 4.0 years ago by
Transmitting Science communication
▴ 70
2
votes
0
replies
658
views
News:
Online course - Introduction to Machine Learning in R -13-16 July 2020
Machine-Learning
R
updated 11 months ago by
Ram
43k • written 4.0 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
749
views
News:
Online Live TScourse: Introduction to Python for Biology (Transmitting Science) July 13th-17th, 2020
online-course
progranming
Python
updated 11 months ago by
Ram
43k • written 4.0 years ago by
Transmitting Science communication
▴ 70
0
votes
0
replies
655
views
News:
precisionFDA is launching the Truth Challenge V2: Calling Variants from Short and Long Reads in Difficult-to-Map Regions on May 1st!
gene
genome
updated 11 months ago by
Ram
43k • written 4.0 years ago by
stephens_sarah
▴ 150
2
votes
0
replies
641
views
News:
Tailored online courses in R
Machine-Learning
R
tidyverse
updated 11 months ago by
Ram
43k • written 4.0 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
641
views
News:
Reminder for the precisionFDA Detecting Adverse Event Anomalies Using FDA Open Data Challenge
R
updated 11 months ago by
Ram
43k • written 4.0 years ago by
stephens_sarah
▴ 150
6
votes
13
replies
2.1k
views
News:
Ensembl reduced functionality: 10th March-16th April 2020
BLAT
VEP
Ensembl
service
updated 11 months ago by
Ram
43k • written 4.2 years ago by
Ben_Ensembl
★ 2.4k
2
votes
0
replies
522
views
News:
ONLINE COURSE-Advanced programming in R
R
updated 11 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
821
views
News:
Landscape Genomics course ONLINE
snp
R
next-gen
updated 11 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
1.7k
views
News:
NCBI Datasets - try it out!
Assembly
refseq
genome
ncbi
updated 11 months ago by
Ram
43k • written 4.1 years ago by
vkkodali_ncbi
★ 3.7k
1
vote
0
replies
1.3k
views
News:
Population Genomics course online
R
SNP
next-gen
updated 11 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
4
votes
0
replies
1.4k
views
News:
ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
2.6k
views
News:
RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R
RNA-Seq
Bioconductor
updated 11 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
555
views
News:
Results are now Available for the precisionFDA, George Washington University, and FDA/CBER HIVE BioCompute Object App-a-thon
R
updated 11 months ago by
Ram
43k • written 4.1 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
814
views
News:
Training in Linux for Biomedical Researchers@NIH, USA,May 13-15,2020
Linux
Training
Biomedical
Researchers
Programming
updated 11 months ago by
Ram
43k • written 4.2 years ago by
AABI
▴ 140
6
votes
0
replies
976
views
News:
CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl
thanks
updated 11 months ago by
Ram
43k • written 4.5 years ago by
Michael R. Crusoe
★ 1.9k
0
votes
0
replies
592
views
News:
Deadline extended for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 months ago by
Ram
43k • written 4.1 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
755
views
News:
Cellosaurus release 34 is available
knowledgebase
cell-line
updated 11 months ago by
Ram
43k • written 4.1 years ago by
Amos Bairoch
▴ 120
1
vote
0
replies
623
views
News:
Calling Data Scientists and Bioinformaticians for the NHLBI Big Data Challenge Competition
Big-Data
Challenge
Competition
updated 11 months ago by
Ram
43k • written 4.2 years ago by
lauren.hochman
▴ 10
0
votes
0
replies
663
views
News:
Reminder for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 months ago by
Ram
43k • written 4.2 years ago by
stephens_sarah
▴ 150
1
vote
0
replies
928
views
News:
Submit to ACM COMPASS 2020 -- Now with a Global Health Track - Deadline extended to March 8th!!
global-health
public-health
updated 11 months ago by
Ram
43k • written 4.2 years ago by
Khader Shameer
18k
0
votes
0
replies
677
views
News:
Training in NCBI Resources for Biomedical Researchers @NIH
Resources
NCBI
Biomedical
Researchers
Programming
updated 11 months ago by
Ram
43k • written 4.2 years ago by
AABI
▴ 140
0
votes
0
replies
901
views
News:
New Courses @ Edinburgh Genomics
alignment
GATK
R
RNA-Seq
Python
updated 11 months ago by
Ram
43k • written 4.2 years ago by
Edinburgh Genomics Training
▴ 40
2
votes
0
replies
544
views
News:
Comparative Genomics course in Berlin
Assembly
next-gen-sequencing
alignment
updated 11 months ago by
Ram
43k • written 4.2 years ago by
carlopecoraro2
★ 2.5k
0
votes
4
replies
1.0k
views
News:
Pan-Structural Variation hackathon in the Cloud!
SV
sequencing
updated 11 months ago by
Ram
43k • written 4.2 years ago by
Medhat
9.7k
1
vote
1
reply
943
views
News:
Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection
webinar
RNA-Seq
gene-fusion
updated 11 months ago by
Ram
43k • written 4.2 years ago by
Strand NGS
▴ 40
0
votes
0
replies
619
views
News:
Deadline extended for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 months ago by
Ram
43k • written 4.2 years ago by
stephens_sarah
▴ 150
1
vote
0
replies
858
views
News:
hackseqRNA: Computational RNA hackathon, Vancouver BC
hackathon
RNA
updated 11 months ago by
Ram
43k • written 4.2 years ago by
ababaian
▴ 50
0
votes
0
replies
609
views
News:
PrecisionFDA FDA Open Data Challenge Reminder
R
updated 11 months ago by
Ram
43k • written 4.2 years ago by
stephens_sarah
▴ 150
9
votes
3
replies
4.8k
views
News:
Bioinformatics Contest 2020. Call for problems
contest
updated 11 months ago by
Ram
43k • written 4.6 years ago by
alserg
▴ 930
0
votes
0
replies
733
views
News:
Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
Genomics
RNA-Seq
Biomedical
next-gen
updated 11 months ago by
Ram
43k • written 4.2 years ago by
AABI
▴ 140
0
votes
0
replies
596
views
News:
Georgetown ICBI and precisionFDA Brain Cancer Challenge Final Reminder
R
updated 11 months ago by
Ram
43k • written 4.2 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
588
views
News:
Training in Variant Analysis @NIH, March 23-26,2020
Variant-calling
Variant-Analysis
Genotype
next-gen
updated 11 months ago by
Ram
43k • written 4.2 years ago by
AABI
▴ 140
0
votes
0
replies
549
views
News:
Phase 2 Data Now Available for the precisionFDA and Georgetown ICBI Brain Cancer Challenge
gene
updated 11 months ago by
Ram
43k • written 4.2 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
773
views
News:
Training in Programming for Biomedical Researchers @NIH, USA,March 2-5,2020
Researchers
Biomedical
Programming
updated 11 months ago by
Ram
43k • written 4.3 years ago by
AABI
▴ 140
0
votes
0
replies
702
views
News:
Training in Creating Plots, Graphs and Maps using R @ NIH
RNA-Seq
Biomedical
next-gen
updated 11 months ago by
Ram
43k • written 4.2 years ago by
AABI
▴ 140
0
votes
0
replies
702
views
News:
Training in Advanced Transcriptomics (RNA-Seq) Analysis
Transcriptome-analysis
RNA-Seq
Biomedical
next-gen
updated 11 months ago by
Ram
43k • written 4.2 years ago by
AABI
▴ 140
2
votes
0
replies
700
views
News:
Population Genomics course
R
SNP
next-gen
updated 11 months ago by
Ram
43k • written 4.2 years ago by
carlopecoraro2
★ 2.5k
7
votes
0
replies
1.0k
views
News:
New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp
blast
blast_index
blast-plus
updated 11 months ago by
Ram
43k • written 4.3 years ago by
GenoMax
142k
1
vote
0
replies
708
views
News:
Bioinformatics for Precision Oncology 2020 Program
cancer-biology
RNA-Seq
cancer
updated 11 months ago by
Ram
43k • written 4.3 years ago by
marketing
▴ 10
0
votes
0
replies
552
views
News:
precisionFDA & Georgetown ICBI Brain Cancer Predictive Modeling Challenge Extension and New Incentive
genome
updated 11 months ago by
Ram
43k • written 4.3 years ago by
stephens_sarah
▴ 150
0
votes
0
replies
648
views
News:
2nd Workshop on Single-Cell Sequencing
single-cell
sequencing
updated 11 months ago by
Ram
43k • written 4.3 years ago by
dnsv.ev
• 0
1
vote
0
replies
641
views
News:
New precisionFDA data science challenge: Help advance postmarket surveillance techniques for FDA regulated products
R
updated 11 months ago by
Ram
43k • written 4.3 years ago by
stephens_sarah
▴ 150
905 results • Page
6 of 19
Recent Votes
Answer: GRCh38.gmap file
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
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Comment: Design matrix Differential expression analysis
by
Gordon Smyth
★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file
by
lorena9132
▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file
by
Mathew
▴ 30
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data
by
Mathew
▴ 30
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis
by
SHN
▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx
by
vjanve
• 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction
by
Expert
▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction
by
ATpoint
82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error
by
Ruqaiya
• 0
This the tool still problematic?
Comment: Segmentation error while using a tool
by
Ruqaiya
• 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool
by
Ruqaiya
• 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool
by
Mensur Dlakic
★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool
by
Thanujay S
• 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA
by
Thanujay S
• 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool
by
Ruqaiya
• 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
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