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905 results • Page 6 of 19
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News: Training in Metagenomics Data Analysis, May 26-29,2020
training Metagenomics next-gen Data-analysis
updated 11 months ago by 43k • written 4.0 years ago by ▴ 140
0
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0
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745
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News: The precisionFDA Truth Challenge V2 is now Live!
genome
updated 11 months ago by 43k • written 4.0 years ago by ▴ 150
2
votes
0
replies
579
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News: Course online - Introduction to Deep Learning; 28th September - 1st October
Deep-Learning Python
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
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0
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815
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News: bioinfo-core workshop at virtual ISMB 2020
conferences ismb
updated 11 months ago by 43k • written 4.0 years ago by 5.3k
0
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0
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533
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News: International Conference on Machine learning and Cloud Computing (MLCL 2020)
Assembly SNP sequencing
updated 11 months ago by 43k • written 4.0 years ago by ▴ 10
6
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4
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1.3k
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News: Course online - Comparative Genomics
assembly genome next-gen alignment
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
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0
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814
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News: TScourse: Introduction to GWAS (Genome-Wide Association Studies) (July 6th-10th, 2020, Crete (Greece))
PLINK PRSice GWAS R Genome
updated 11 months ago by 43k • written 4.0 years ago by ▴ 70
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0
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846
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News: Online Live TScourse: Python Machine Learning in Biology (July 20th-24th, 2020)
online-course Python Machine-learning
updated 11 months ago by 43k • written 4.0 years ago by ▴ 70
2
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0
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658
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News: Online course - Introduction to Machine Learning in R -13-16 July 2020
Machine-Learning R
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
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0
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749
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News: Online Live TScourse: Introduction to Python for Biology (Transmitting Science) July 13th-17th, 2020
online-course progranming Python
updated 11 months ago by 43k • written 4.0 years ago by ▴ 70
0
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0
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655
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News: precisionFDA is launching the Truth Challenge V2: Calling Variants from Short and Long Reads in Difficult-to-Map Regions on May 1st!
gene genome
updated 11 months ago by 43k • written 4.0 years ago by ▴ 150
2
votes
0
replies
641
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News: Tailored online courses in R
Machine-Learning R tidyverse
updated 11 months ago by 43k • written 4.0 years ago by ★ 2.5k
0
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0
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641
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News: Reminder for the precisionFDA Detecting Adverse Event Anomalies Using FDA Open Data Challenge
R
updated 11 months ago by 43k • written 4.0 years ago by ▴ 150
6
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13
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2.1k
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News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 11 months ago by 43k • written 4.2 years ago by ★ 2.4k
2
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0
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522
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News: ONLINE COURSE-Advanced programming in R
R
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
2
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0
replies
821
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News: Landscape Genomics course ONLINE
snp R next-gen
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
1
vote
2
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1.7k
views
News: NCBI Datasets - try it out!
Assembly refseq genome ncbi
updated 11 months ago by 43k • written 4.1 years ago by ★ 3.7k
1
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0
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1.3k
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News: Population Genomics course online
R SNP next-gen
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
4
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0
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1.4k
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News: ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
2
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1
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2.6k
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News: RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R RNA-Seq Bioconductor
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
0
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0
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555
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News: Results are now Available for the precisionFDA, George Washington University, and FDA/CBER HIVE BioCompute Object App-a-thon
R
updated 11 months ago by 43k • written 4.1 years ago by ▴ 150
0
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0
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815
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News: Training in Linux for Biomedical Researchers@NIH, USA,May 13-15,2020
Linux Training Biomedical Researchers Programming
updated 11 months ago by 43k • written 4.2 years ago by ▴ 140
6
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0
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976
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News: CWL user support moving to https://cwl.discourse.group/; many thanks to Biostars for over 4 years of support!
cwl thanks
updated 11 months ago by 43k • written 4.5 years ago by ★ 1.9k
0
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0
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592
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News: Deadline extended for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 months ago by 43k • written 4.1 years ago by ▴ 150
0
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0
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755
views
News: Cellosaurus release 34 is available
knowledgebase cell-line
updated 11 months ago by 43k • written 4.1 years ago by ▴ 120
1
vote
0
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623
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News: Calling Data Scientists and Bioinformaticians for the NHLBI Big Data Challenge Competition
Big-Data Challenge Competition
updated 11 months ago by 43k • written 4.2 years ago by ▴ 10
0
votes
0
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663
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News: Reminder for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 months ago by 43k • written 4.2 years ago by ▴ 150
1
vote
0
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928
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News: Submit to ACM COMPASS 2020 -- Now with a Global Health Track - Deadline extended to March 8th!!
global-health public-health
updated 11 months ago by 43k • written 4.2 years ago by 18k
0
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0
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677
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News: Training in NCBI Resources for Biomedical Researchers @NIH
Resources NCBI Biomedical Researchers Programming
updated 11 months ago by 43k • written 4.2 years ago by ▴ 140
0
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0
replies
901
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News: New Courses @ Edinburgh Genomics
alignment GATK R RNA-Seq Python
updated 11 months ago by 43k • written 4.2 years ago by ▴ 40
2
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0
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545
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News: Comparative Genomics course in Berlin
Assembly next-gen-sequencing alignment
updated 11 months ago by 43k • written 4.2 years ago by ★ 2.5k
0
votes
4
replies
1.0k
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News: Pan-Structural Variation hackathon in the Cloud!
SV sequencing
updated 11 months ago by 43k • written 4.2 years ago by 9.7k
1
vote
1
reply
943
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News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
detection webinar RNA-Seq gene-fusion
updated 11 months ago by 43k • written 4.2 years ago by ▴ 40
0
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0
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619
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News: Deadline extended for the FDA Open Data Adverse Event Anomalies Challenge
R
updated 11 months ago by 43k • written 4.2 years ago by ▴ 150
1
vote
0
replies
858
views
News: hackseqRNA: Computational RNA hackathon, Vancouver BC
hackathon RNA
updated 11 months ago by 43k • written 4.2 years ago by ▴ 50
0
votes
0
replies
609
views
News: PrecisionFDA FDA Open Data Challenge Reminder
R
updated 11 months ago by 43k • written 4.2 years ago by ▴ 150
9
votes
3
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4.8k
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News: Bioinformatics Contest 2020. Call for problems
contest
updated 11 months ago by 43k • written 4.6 years ago by ▴ 930
0
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0
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733
views
News: Training in Bioinformatic Analysis of Next Generation Sequencing Data@NIH
Genomics RNA-Seq Biomedical next-gen
updated 11 months ago by 43k • written 4.2 years ago by ▴ 140
0
votes
0
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596
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News: Georgetown ICBI and precisionFDA Brain Cancer Challenge Final Reminder
R
updated 11 months ago by 43k • written 4.2 years ago by ▴ 150
0
votes
0
replies
588
views
News: Training in Variant Analysis @NIH, March 23-26,2020
Variant-calling Variant-Analysis Genotype next-gen
updated 11 months ago by 43k • written 4.2 years ago by ▴ 140
0
votes
0
replies
549
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News: Phase 2 Data Now Available for the precisionFDA and Georgetown ICBI Brain Cancer Challenge
gene
updated 11 months ago by 43k • written 4.2 years ago by ▴ 150
0
votes
0
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773
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News: Training in Programming for Biomedical Researchers @NIH, USA,March 2-5,2020
Researchers Biomedical Programming
updated 11 months ago by 43k • written 4.3 years ago by ▴ 140
0
votes
0
replies
702
views
News: Training in Creating Plots, Graphs and Maps using R @ NIH
RNA-Seq Biomedical next-gen
updated 11 months ago by 43k • written 4.2 years ago by ▴ 140
0
votes
0
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702
views
News: Training in Advanced Transcriptomics (RNA-Seq) Analysis
Transcriptome-analysis RNA-Seq Biomedical next-gen
updated 11 months ago by 43k • written 4.2 years ago by ▴ 140
2
votes
0
replies
700
views
News: Population Genomics course
R SNP next-gen
updated 11 months ago by 43k • written 4.2 years ago by ★ 2.5k
7
votes
0
replies
1.0k
views
News: New layout for NCBI BLAST FTP database site starting February 4, 2020
ftp blast blast_index blast-plus
updated 11 months ago by 43k • written 4.3 years ago by 142k
1
vote
0
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708
views
News: Bioinformatics for Precision Oncology 2020 Program
cancer-biology RNA-Seq cancer
updated 11 months ago by 43k • written 4.3 years ago by ▴ 10
0
votes
0
replies
552
views
News: precisionFDA & Georgetown ICBI Brain Cancer Predictive Modeling Challenge Extension and New Incentive
genome
updated 11 months ago by 43k • written 4.3 years ago by ▴ 150
0
votes
0
replies
648
views
News: 2nd Workshop on Single-Cell Sequencing
single-cell sequencing
updated 11 months ago by 43k • written 4.3 years ago by • 0
1
vote
0
replies
641
views
News: New precisionFDA data science challenge: Help advance postmarket surveillance techniques for FDA regulated products
R
updated 11 months ago by 43k • written 4.3 years ago by ▴ 150
905 results • Page 6 of 19
Recent Votes
Answer: GRCh38.gmap file
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
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Recent Replies
Comment: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file by lorena9132 ▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file by Mathew ▴ 30
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data by Mathew ▴ 30
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx by vjanve • 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
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