Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : this month
all time
today
this week
this month
this year
21 results • Page
1 of 1
Sort: Views
Rank
Views
Votes
Replies
1
vote
2
replies
1.2k
views
News:
The GDC Legacy Archive is retiring soon.
genomic-data-commons
tcga
gdc
20 days ago by
Zhenyu Zhang
★ 1.2k
0
votes
2
replies
455
views
News:
FINAL CALL: 8th Berlin Summer School in NGS Data Analysis - Only a few last places available
DNA-seq
variant-calling
RNA-seq
illumina
transcriptomics
12 days ago by
David Langenberger
11k
1
vote
2
replies
315
views
News:
We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering
Spatial-transcriptomics
updated 18 days ago by
Weiwen
• 0 • written 19 days ago by
MICOS
▴ 10
3
votes
0
replies
248
views
News:
Webinar “Learning Single-cell Atlases” with Dr. Fabian Theis, author of Scanpy on May 8
Scanpy
Generative-AI
scRNA
Machine-Learning
updated 29 days ago by
Ram
44k • written 29 days ago by
Claire Watson
▴ 60
1
vote
2
replies
242
views
News:
ICGEB - SLIBTEC NGS Workshop: Won Best Oral Presentation Award
BestTalk
PlatformPresentation
offtopic
updated 4 days ago by
colindaven
6.4k • written 6 days ago by
Dr.
• 0
1
vote
0
replies
208
views
News:
Landscape Genomics course in Switzerland
LFMM
Landscape-Genomics
Sambada
R
Local-Adaptation
23 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
195
views
News:
Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy
Python
NumPy
updated 25 days ago by
Ram
44k • written 25 days ago by
Chakri
• 0
1
vote
0
replies
182
views
News:
Course on Manual Genome Curation
Genome-Assembly
Pretext-View
Manual-Genome-Curation
updated 9 days ago by
Ram
44k • written 9 days ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
172
views
News:
course on Landscape Genomics at the EPFL in Lausanne (June 17-21)
LandscapeGenomics
SNPs
LocalAdaptation
GIS
16 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
160
views
News:
Online course: Meta-analysis in R - last 2 seats left
Meta-Analysis
Statistics
R
updated 25 days ago by
Ram
44k • written 25 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
154
views
News:
Cellosaurus release 49 is available
cell
biocuration
line
database
news
knowledgebase
22 days ago by
Amos Bairoch
▴ 120
0
votes
0
replies
148
views
News:
Online course: Genome Annotation
Genome-Assembly
Genome-Annotation
26 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
140
views
News:
Online course: Introduction to Deep Learning
Python
Deep-Learning
Convolutional-Neural-Network
Machine-Learning
updated 17 days ago by
Ram
44k • written 17 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
138
views
News:
Online course: An Introduction to Nanopore Direct RNA Sequencing
Nanopore
RNAseq
13 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
135
views
News:
Online course: Bioinformatic analysis of transposable elements
GenomeAssembly
Transcriptomics
TransposableElements
ManualCuration
20 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
134
views
News:
Online course. -Time series analysis and Forecasting in R
Time-Series
Forecasting
R
Stastics
18 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
132
views
News:
Beyond beginner R: Advancing your coding skills - September 16-19
Advanced-Coding
Programming
R
updated 23 days ago by
Ram
44k • written 23 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
103
views
News:
Bioinformatic Analysis of Transposable Elements course
Genome-Annotation
TE
Manual-Curation
Transposable-Elements
updated 3 days ago by
Ram
44k • written 3 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
103
views
News:
Online course: Network analysis in Systems Biology with R/Bioconductor
Bioconductor
Systems-Biology
Network-Analysis
R
updated 5 days ago by
Ram
44k • written 5 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
96
views
News:
Online course- Advanced Python for Life Sciences
Python-Programming
Data-Visualisation
Machine-Learning
updated 4 days ago by
Ram
44k • written 4 days ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
95
views
News:
New course: Manipulation of NGS Data for Genomic and Population Genetics Analyses
KeepLearning
TScourses
10 days ago by
Transmitting Science communication
▴ 70
21 results • Page
1 of 1
Recent Votes
Low DESeq2 Sensivity on scRNA Pseudobulk Samples
DESEQ2: How can I convert ensembl gene id's to HGNC gene names.
Problem with Ensembl version identifiers after running DESeq2
Issues with adding gene name and entrez ID to DESeq2 result having Ensembl ID.
A: Looking for differential gene expression between treatment, within a specific cl
How to compare cell-type ratios in sc-RNA seq data?
How to calculate cell type frequency between two groups in single cell data
Recent Locations •
All
China,
just now
United States,
just now
Australia,
17 minutes ago
Japan,
25 minutes ago
Canada,
36 minutes ago
Canada,
57 minutes ago
Taiwan,
1 hour ago
Recent Awards •
All
Teacher
to
alanh
▴ 170
Popular Question
to
Pegasus
▴ 100
Teacher
to
Rob
6.6k
Popular Question
to
seta
★ 1.9k
Popular Question
to
melissachua90
▴ 70
Popular Question
to
Hamtaro
▴ 50
Popular Question
to
ericrkofman
▴ 20
Recent Replies
Comment: Merging multiple samples in Seurat
by
Picasa
▴ 640
did you split by sample or donor ?
Comment: Harmony integration group.by.var parameter
by
Picasa
▴ 640
For downstream analysis, after integration, my plan is to annotate each cluster/cell type and then perform a DGE analysis of KO versus WT f…
Comment: How to calculate cell type frequency between two groups in single cell data
by
Bastien Hervé
5.3k
That is correct
Answer: Setting a threshold on gene expression for subsetting (scRNA-seq)
by
ATpoint
82k
That depends on the data and the marker. Generally I would plot violins per cluster for the marker(s) and see whether one robustly overexpr…
Comment: Error when i use EVidenceModeler to do the genome annotation
by
peanut
• 0
thank you so much ,i get it
Comment: Number of non-ATCG nucleotides replaced by Salmon
by
Tonya S.
▴ 10
Oops, yes, that must be where they are coming from. For some reason, I was thinking the genome was just soft-masked. How embarrassing! Than…
Answer: Number of non-ATCG nucleotides replaced by Salmon
by
Rob
6.6k
If there are no other signs that anything is awry, I probably wouldn't worry about this. Is it possible that these non-canonical nucleotid…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
Brian Bushnell
20k
I examined nine 10B runs and five 25B runs (we just started getting 25B flowcells a few months ago). I did not pay close attention but it …
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
GenoMax
142k
> I don't know how widespread these issues are outside of JGI. Very few small/medium sequencing centers likely have NovaSeq X. This is the…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage
by
Brian Bushnell
20k
Supporting figures, taken from some slides I prepared for internal use. HDist 0, 1, and 2 correspond to 0, 1, and 2 mismatches allowed in …
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
This works. Thank you so so much!
Comment: Harmony integration group.by.var parameter
by
jared.andrews07
★ 17k
>I am not sure, but using "Sample_ID" might remove the differences between the conditions right ? More than likely, it'd at least impact t…
Comment: Harmony integration group.by.var parameter
by
Picasa
▴ 640
Thanks jared.andrews07 for your answer. So, you are suggesting to use only "Donor" in the integration? ```r RunHarmony(seu_obj, group.by.…
Comment: Single cell analysis: Unable to subset cells in seurat object using desired nFea
by
sc_analysis
• 0
I am not sure what should be the cut off. Looking at the vlnplot before subsetting i thought most of the cells are falling under 7500 nfeat…
Comment: How to calculate cell type frequency between two groups in single cell data
by
Sara
▴ 30
Thank you for your comment and sorry if this question might be so basic. How can I normalize the number of cells? If I am not wrong the i…
Traffic: 1227 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6