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899 results • Page
5 of 18
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0
votes
2
replies
1.5k
views
News:
Webinar on fast and accurate DNA variant calling on 26 Apr 2017
variant-calling
SNP
gatk
strand-ngs
alignment
updated 11 months ago by
Ram
43k • written 7.0 years ago by
Genomics
▴ 70
5
votes
3
replies
1.4k
views
News:
Top GitHub repos for biomedicine
open-source
software
GitHub
updated 11 months ago by
Ram
43k • written 5.3 years ago by
field.cady
▴ 50
0
votes
0
replies
1.4k
views
News:
RNA-Seq Data Analysis Workshop in Leipzig, Germany (23 - 26 October 2018)
hands-on
RNA-Seq
workshop
updated 11 months ago by
Ram
43k • written 5.9 years ago by
David Langenberger
11k
0
votes
0
replies
1.4k
views
News:
Sequel System Data Release: Iso-Seq Results for Hummingbird and Zebra Finch Brain Tissue
Iso-Seq
Pacific-Biosciences
SMRT-Sequencing
updated 11 months ago by
Ram
43k • written 6.7 years ago by
christian.j.olsen
• 0
0
votes
0
replies
1.4k
views
News:
Introduction to Mixed (Hierarchical) models for biologists using R (IMBR01)
R
updated 11 months ago by
Ram
43k • written 6.0 years ago by
oliverhooker
▴ 60
0
votes
0
replies
1.4k
views
News:
Course: Exploratory multivariate analysis and visualization of genomic data. Berlin 19-23 March 2018
Dataviz
snp
Multivariate-Analysis
updated 11 months ago by
Ram
43k • written 6.4 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.4k
views
News:
16S Microbial Metabarcoding
R
Metabarcoding
updated 11 months ago by
Ram
43k • written 5.5 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.4k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
BioConductor
Statistics
R
updated 11 months ago by
Ram
43k • written 6.5 years ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
1.4k
views
News:
Community Feedback - OBF mailing list issues
Biojava
Biopython
EMBOSS
BioPerl
Bioruby
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Chris Fields
★ 2.2k
3
votes
0
replies
1.4k
views
News:
NIH Strategic Plan for Data Science
nih
data-science
updated 11 months ago by
Ram
43k • written 6.1 years ago by
GenoMax
141k
1
vote
0
replies
1.4k
views
News:
Workshop: Introduction to Linux and workflows for biologists
Assembly
snp
blast
alignment
updated 11 months ago by
Ram
43k • written 7.1 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.4k
views
News:
Course: Molecular phylogenies in biodiversity. 9-13 April 2018 in Berlin (Germany)
blast
R
alignment
updated 11 months ago by
Ram
43k • written 6.3 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.4k
views
News:
Speciation Genomics Workshop
genome
snp
speciation
next-gen
updated 11 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.5k
2
votes
3
replies
1.4k
views
News:
Bio-On-Magnetic-Beads (BOMB): Open platform for high-throughput nucleic acid extraction and manipulation
rna-extraction
dna-extraction
rna-seq
updated 11 months ago by
Ram
43k • written 5.6 years ago by
tpjurkowski
▴ 20
0
votes
0
replies
1.4k
views
News:
Hackathon on how to use biodata to improve health outcomes
disease
drugs
genomics
open-targets
updated 11 months ago by
Ram
43k • written 5.9 years ago by
Denise CS
★ 5.2k
0
votes
3
replies
1.4k
views
News:
:: FINAL CALL :: A Practical Introduction to NGS Data Analysis (Nov 29 - Dec 1, 2023 in Munich, Germany) - only 2 seats left
DNA-Seq
NGS
RNA-Seq
Workshop
5 months ago by
David Langenberger
11k
1
vote
0
replies
1.4k
views
News:
Metagenomics course. 9-13 April 2018
omics
Metatranscriptomics
metagenomics
updated 11 months ago by
Ram
43k • written 6.2 years ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
1.4k
views
News:
Webinar on Leukocyte immunobiology by Dr. Mario Deng, Professor of Medicine, UCLA on 9 Aug 2017, 8am PST
UCLA
transcriptome-analysis
RNA-Seq
Strand-NGS
updated 11 months ago by
Ram
43k • written 6.8 years ago by
Genomics
▴ 70
0
votes
0
replies
1.4k
views
News:
R without fear: our interview to Dr Ken Aho
biostatistics
R
statistics
updated 11 months ago by
Ram
43k • written 6.9 years ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
1.4k
views
News:
Free e-learning from EMBL-EBI
free-courses
EMBL
EBI
e-learning
updated 11 months ago by
Ram
43k • written 5.9 years ago by
natasha.sernova
★ 4.0k
3
votes
0
replies
1.4k
views
News:
Analysis of single cell RNA-seq data - Berlin 23 -27 March 2020
scRNA-seq
RNA-Seq
updated 10 months ago by
Ram
43k • written 4.8 years ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
1.4k
views
News:
GeNets: a unified web platform for network-based genomic analyses
networks
pathways
RNA-Seq
visualization
updated 11 months ago by
Ram
43k • written 5.9 years ago by
ivivek_ngs
★ 5.2k
0
votes
0
replies
1.4k
views
News:
Workshop: RAD-seq data analysis (Berlin, 2-6 July 2018 )
RAD-seq
SNP
Stacks2.0
updated 11 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.5k
2
votes
1
reply
1.4k
views
News:
of the Galaxy: 17.05 Release, Galaxy Community Conference, and more
event
galaxy
paper
updated 11 months ago by
Ram
43k • written 6.9 years ago by
Dave Clements
▴ 610
1
vote
2
replies
1.4k
views
News:
Webinar on Diagnosis of Rare Diseases using NGS Based Multi-gene Testing- Case studies by Dr.Aparna Ganapathy on 18 Apr 2018
variant-calling
rare-disease
dna-seq
strand-ngs
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Genomics
▴ 70
0
votes
0
replies
1.4k
views
News:
Physalia-courses: Upcoming courses
SNP
next-gen
R
RNA-Seq
updated 11 months ago by
Ram
43k • written 7.0 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.4k
views
News:
Training in Bioinformatics for Beginners @ NIH, USA, Jan 15-18,2019
Beginners
Training
updated 11 months ago by
Ram
43k • written 5.5 years ago by
AABI
▴ 140
4
votes
0
replies
1.4k
views
News:
ONLINE course - Metagenomics, metatranscriptomics, and multi'omics for microbial community studies
next-gen-sequencing
updated 10 months ago by
Ram
43k • written 4.1 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.4k
views
News:
Joint webinar by Agilent Technologies and Strand Life Sciences on 'Analysis of Variants using GeneSpring GX'
agilent
variant-analysis
strand
genespring
updated 11 months ago by
Ram
43k • written 6.4 years ago by
Genomics
▴ 70
0
votes
0
replies
1.4k
views
News:
New bioinformatics courses at Edinburgh Genomics
Training
R
Linux
RNA-Seq
Workshop
updated 11 months ago by
Ram
43k • written 5.2 years ago by
Edinburgh Genomics Training
▴ 40
0
votes
0
replies
1.4k
views
News:
BioSB Course Pattern Recognition (5th edition), 25-29 September 2017, Amsterdam, the Netherlands
machine-learning
updated 11 months ago by
Ram
43k • written 6.8 years ago by
per.moerland
▴ 10
0
votes
0
replies
1.4k
views
News:
Introduction to Python for biologists (IPYB06)
genome
RNA-Seq
next-gen
updated 11 months ago by
Ram
43k • written 5.0 years ago by
oliverhooker
▴ 60
2
votes
2
replies
1.4k
views
News:
Course: Applied Statistics and Bioinformatics with R and Bioconductor. (Berlin, 22-26 January 2018)
R
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.4 years ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
1.4k
views
News:
Advanced Sequencing Technologies & Bioinformatics Analysis Course at CSHL: November 3 - 15, 2020
course
sequencing
workshop
updated 10 months ago by
Ram
43k • written 4.3 years ago by
Obi Griffith
20k
0
votes
0
replies
1.4k
views
News:
Metabarcoding Workshop. 4-8 March
metabarcoding
next-gen
updated 11 months ago by
Ram
43k • written 5.3 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.4k
views
News:
Hands-on machine learning workshop for biomedical data
genome
machine-learning
updated 11 months ago by
Ram
43k • written 5.8 years ago by
sahil
▴ 10
0
votes
0
replies
1.4k
views
News:
eDNA Metabarcoding Workshop in Canada
R
eDNA
next-gen
updated 11 months ago by
Ram
43k • written 5.9 years ago by
carlopecoraro2
★ 2.5k
3
votes
1
reply
1.4k
views
News:
Ensembl in Google Summer of Code
Ensembl
Internship
Google-Summer-of-Code
GSOC
updated 11 months ago by
Ram
43k • written 7.1 years ago by
Emily
23k
0
votes
0
replies
1.4k
views
News:
Summer Bioinformatics Training Program - Louisiana Biomedical Research Network
genome
RNA-Seq
gene
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 5.9 years ago by
elia.brodsky
▴ 340
0
votes
0
replies
1.4k
views
News:
Webinar: Mapping the single-cell atlas of the bone marrow microenvironment
webinar
RNA-Seq
next-gen
single-cell
updated 10 months ago by
Ram
43k • written 4.7 years ago by
Jennifer Pham
▴ 450
0
votes
1
reply
1.4k
views
News:
Online Workshop - A Practical Introduction to NGS Data Analysis (May 27-29,2020)
NGS
DNA-seq
Workshop
updated 10 months ago by
Ram
43k • written 4.0 years ago by
David Langenberger
11k
3
votes
1
reply
1.4k
views
News:
GATK returns to a fully open-source license
gatk
updated 11 months ago by
Ram
43k • written 6.9 years ago by
Istvan Albert
100k
0
votes
0
replies
1.4k
views
News:
Powerful and Intuitive Gene Expression Visualization Tools to Interpret Biological Signals---Bulk and Single Cell Data
scRNA-Seq
webinar
RNA-Seq
single-cell
updated 11 months ago by
Ram
43k • written 5.5 years ago by
kgosche
▴ 30
1
vote
0
replies
1.3k
views
News:
SNAKEMAKE course in Berlin
next-gen
updated 11 months ago by
Ram
43k • written 5.7 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.3k
views
News:
National Symposium on Database Development and Biocuration (April 6-7, 2018; www.genomeindia.org/nsddb)
database
Biocuration
curation
updated 11 months ago by
Ram
43k • written 6.2 years ago by
saurabh
• 0
0
votes
0
replies
1.3k
views
News:
See your data in context with NCBI s updated Genome Data Viewer
bam
ncbi
updated 11 months ago by
Ram
43k • written 6.1 years ago by
Pierre Lindenbaum
161k
0
votes
0
replies
1.3k
views
News:
Course: Gene set enrichment and pathway analysis in R . Berlin 12-16 March 2018
R
ChIP-Seq
next-gen-sequencing
updated 11 months ago by
Ram
43k • written 6.3 years ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
1.3k
views
News:
Brand new bioinformatics courses at Edinburgh Genomics
metagenomics
python
RNA-Seq
training
updated 11 months ago by
Ram
43k • written 4.8 years ago by
Edinburgh Genomics Training
▴ 40
0
votes
0
replies
1.3k
views
News:
Training in Creating Plots, Graphs and Maps using R @ NIH, USA, Mar 6 - 9, 2018
R
plots
maps
graphs
updated 11 months ago by
Ram
43k • written 6.2 years ago by
AABI
▴ 140
0
votes
0
replies
1.3k
views
News:
Training in Metagenomics Data Analysis @ NIH, March 12-15,2019
Metagenomics
Analysis
Training
updated 11 months ago by
Ram
43k • written 5.3 years ago by
AABI
▴ 140
899 results • Page
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Answer: Seurat merge and batch correction
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Comment: How to convert plink files to Hapmap Format
Answer: Missing protein (VEGF-A) in String db
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Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
• 0
Thank you for replying Pierre. I first added a third column to the SNP bed file, so that I would get a range of 1 for each SNP awk 'B…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
Pierre Lindenbaum
161k
> using bcftools Show us what you tried
Answer: gvcf joint calling
by
Jeremy Leipzig
22k
> Hi, guys, there is a question about the genomic gVCF file. I wonder > that since gVCF contains the non-var block records, why after merge…
Comment: Missing protein (VEGF-A) in String db
by
shalespringer
• 0
Thank you for replying here; this helped me figure out why MAPK10 was missing from my results. It was also marked as a pseudogene in the En…
Comment: How to convert plink files to Hapmap Format
by
Sofia
• 0
These are the first lines of the output: (Please is it normal to have NA in the P value column ?) CHR …
Comment: How do I use the STARSolo aligner with MGI DNBelab C series HT scRNAseq librarie
by
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• 0
So I used the barcodes that I created (combos of positions 1-10 and 11-20) and I obtained similar alignment stats as the paper I pulled the…
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by
Sofia
• 0
Thank you so much, it actually worked!
Answer: Rare Disease Variant Pathway Analysis
by
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4.2k
Hi @efc1e545 , First a caveat. the information we most need in order to help guide you to a successful conclusion is not provided in thi…
Answer: Sequence read length shorter than flow cell specification
by
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14k
The company probably had you share your run with someone who needed the extra bases. So you get the extra bases free. Just use them unle…
Comment: how to combine multiple RNAseq count files into a single dataframe in R and unix
by
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43k
Thank you, the `csvtk spread` is super useful. I usually import into R using `lapply` then `Reduce` using `merge` but this might be easier.
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Thank you for your guidance. The thing is that I am unfamiliar with using such environments, unfortunately.
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Open a new question, with details.
Comment: Normalize scRNAseq data to housekeeping genes to compare several datasets
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I recommend https://bioconductor.org/books/3.18/OSCA.basic/normalization.html as well as the "advanced" section in this book.
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by
QX
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thank you!
Comment: Treatment VS Control in Single Cell RNAseq analysis
by
kilcdincer
▴ 10
Hello, I have more or less same experimental setting and was wondering how you proceeded with your analysis? Can I reach its GitHub reposit…
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