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1,000 results • Page
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478
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News:
Metabarcoding in Microbial Ecology
Metabarcoding
Qiime2
16S
MicrobialEcology
R
16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
445
views
News:
Metagenomics tools recommeder system
NGS
Metagenomics
Recommender-system
updated 16 months ago by
Ram
43k • written 16 months ago by
KATA
• 0
0
votes
0
replies
748
views
News:
Hands-On NGS Data Analysis Workshops 2023
NGS
Workshop
RNA-Seq
DNA-Seq
16 months ago by
David Langenberger
11k
1
vote
5
replies
1.2k
views
News:
Cancer Genomics course - 2 seats left
Genomics
Cancer-Genomics
R
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
456
views
News:
Course on Generalised Additive Models In R
Statistics
GAMs
R
16 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
667
views
News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
1
vote
2
replies
1.8k
views
News:
New chat server (Discord) for bioinformatics
community
16 months ago by
Samuel Lampa
★ 1.3k
0
votes
0
replies
659
views
News:
Online course - Genome Assembly and Annotation
Long-reads
Genome-Annotation
Biodiversity
Genome-Assembly
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
1
vote
3
replies
939
views
News:
NCBI BLAST ClusteredNR database now available for blastx and PSI-BLAST searches
PSI-BLAST
blastx
BLAST
NCBI
ClusteredNR
16 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
601
views
News:
Winter School in Bioinformatics - last seats available
Genomics
Unix
RNA-seq
docker
updated 15 months ago by
Ram
43k • written 16 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
518
views
News:
Virtual RNA-seq Analysis (Model Organism) Workshop
virtual
expression
rna-seq
analysis
workshop
16 months ago by
mia.nahom
▴ 10
0
votes
0
replies
532
views
News:
Introduction to R Shiny course
WebApplications
R
RShiny
17 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
580
views
News:
New version of ElasticBLAST (1.0.0) available.
NCBI
ElasticBLAST
BLAST
17 months ago by
PeterC_NCBI
▴ 410
0
votes
1
reply
559
views
News:
Courses in January - still a few seats available
R-Shiny
Genomics
Unix
R
updated 15 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
378
views
News:
Sex Chromosome Evolution course
Genomics
Sex-Chromosome-Evolution
updated 17 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
505
views
News:
Cellosaurus release 44 is available
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 17 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
424
views
News:
Introductory video to the Cellosaurus
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 17 months ago by
Amos Bairoch
▴ 120
0
votes
3
replies
1.1k
views
News:
Nvidia Clara Parabricks is FREE for R&D
nvidia
workflow
gpu
updated 17 months ago by
4galaxy77
2.8k • written 17 months ago by
Pierre Lindenbaum
161k
2
votes
3
replies
721
views
News:
NCBI Comparative Genome Viewer now allows searches for genes across aligned assemblies
Browser
NCBI
Alignments
Genome
17 months ago by
PeterC_NCBI
▴ 410
1
vote
6
replies
1.2k
views
News:
Course - FLOW CYTOMETRY ANALYSIS WITH R/BIOCONDUCTOR
Bioconductor
FlowCytometry
R
updated 16 months ago by
synat.keam
▴ 100 • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
343
views
News:
INTRODUCTION TO ANALYTICAL PALEOBIOLOGY: FOSSIL RECORD BIASES, DIVERSITY, & BIOGEOGRAPHY
Biogeography
Paleobiology
R
17 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
374
views
News:
Analysis of Cancer Genomes Using R and Bioinformatic Tools
Genomics
Cancer-Genomics
R
updated 17 months ago by
Ram
43k • written 17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
574
views
News:
course - GENOME ASSEMBLY USING OXFORD NANOPORE SEQUENCING
Long-reads
Assembly
Nanopore
Genome
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
372
views
News:
Online training - VERSION CONTROL FOR RESEARCHERS
Version
Control
Git
Github
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
1
reply
475
views
News:
Research Training In NGS Data Analysis
analysis
data-analysis
updated 17 months ago by
Ram
43k • written 17 months ago by
RASALSI
• 0
0
votes
0
replies
470
views
News:
Bayesian regression modeling in R course
RegressionModeling
Bayesian
R
17 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
514
views
News:
Genome Assembly and Annotation course
Annotation
Nanopore
GenomeAssembly
Pacbio
18 months ago by
carlopecoraro2
★ 2.5k
3
votes
0
replies
1.2k
views
News:
Changes to the default NCBI BLAST nucleotide database (nt). Learn more and provide feedback!
NCBI
Databases
BLAST
18 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
424
views
News:
Nextflow online training
Nextflow
Workflow
Reproducibility
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
1.3k
views
News:
:: FINAL CALL :: Next-Generation Sequencing Data Analysis: A Practical Introduction (December 12-14, 2022 in Munich, Germany)
rnaseq
dnaseq
sequencing
ngs
workshop
18 months ago by
David Langenberger
11k
0
votes
0
replies
531
views
News:
The Association for Single Cell Analysis (ASCA)
genomics
singlecell
metabolomics
sequencing
proteomics
18 months ago by
dnsv.ev
• 0
0
votes
0
replies
470
views
News:
Deep Learning in Population Genomics and Phylogeography
DeepLearning
Phylogeography
PopulationGenomics
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
444
views
News:
Metabarcoding in Microbial Ecology Workshop
Qiime2
R
Metabarcoding
Microbial-Ecology
18 months ago by
carlopecoraro2
★ 2.5k
2
votes
2
replies
665
views
News:
Gene Set Enrichment Analysis in R/Bioconductor
Gene-Set-Enrichment-Analysis
R
Cancer-Genomics
GSEA
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
400
views
News:
Analysis of RNA sequencing data with R/Bioconductor course.
Bioconductor
RNAseq
R
18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
608
views
News:
Winter School in Bioinformatics
course
workshop
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
1
vote
0
replies
479
views
News:
Introduction to Nextflow
Nextflow
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
2
replies
728
views
News:
Seascape Genomics in R
Genomics
Seascape
R
updated 17 months ago by
Ram
43k • written 18 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
380
views
News:
Bioinformatics courses in November
Bioconductor
Genomics
R
updated 17 months ago by
Ram
43k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
894
views
News:
Flow cytometry analysis with R/Bioconductor course
Bioconductor
R
Cytometry
Flow
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
416
views
News:
course: RNA-seq analyses in non-model organisms
differential
Bioconductor
RNAseq
expression
non-model
organisms
analysis
R
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
417
views
News:
course - Developing R/Bioconductor packages for genomics
developing
package
Bioconductor
Genomics
R
19 months ago by
carlopecoraro2
★ 2.5k
2
votes
0
replies
482
views
News:
Four NCBI workshops in October (BLAST, Primer-BLAST, Metagenome analysis, Structures in iCn3D)
metagenomics
MagicBLAST
BLAST
NCBI
Primer-BLAST
19 months ago by
PeterC_NCBI
▴ 410
0
votes
0
replies
649
views
News:
course - Unix and shell scripting for bioinformatics
bash
Shell-scripting
Unix
updated 17 months ago by
Ram
43k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
441
views
News:
course: Data Visualization in Python
Visualisation
Python
Data
updated 19 months ago by
GenoMax
142k • written 19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
436
views
News:
Seascape Genomics in R course
Genomics
R
Seascape
Population
19 months ago by
carlopecoraro2
★ 2.5k
0
votes
0
replies
561
views
News:
Cellosaurus API
line
cell
API
20 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
445
views
News:
Cellosaurus release 43 is available
cellosaurus
cell-line
updated 17 months ago by
Ram
43k • written 20 months ago by
Amos Bairoch
▴ 120
0
votes
0
replies
389
views
News:
Genomics Webinar: Using Mastermind’s New ClinVar Integration to Accelerate Clinical Diagnoses
variant-interpretation
genomics
database
webinar
updated 17 months ago by
Ram
43k • written 20 months ago by
Kate
• 0
0
votes
0
replies
369
views
News:
course: Population Genomic Inference from Low-coverage Whole-genome Sequencing Data
whole-genome
genomics
population
low-coverage
sequencing
updated 20 months ago by
Jeremy Leipzig
22k • written 20 months ago by
carlopecoraro2
★ 2.5k
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C: Splitting .vcf file
Answer: Grouping datasets in Seurat
Answer: How should I make kallisto indexes?
Comment: Why does assigning genes with biomart give me different values than using a tran
Answer: Grouping datasets in Seurat
Best tool to find potential TF binding sites within a specific DNA sequence?
Comment: RNA seq analysis
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Answer: Details on salmon index
by
Rob
6.5k
Hi Lorenzo, Thanks for your question. First, I'd like to clarify that several substantial updates have been made to salmon since its …
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
yura.grabovska
▴ 80
sc/snRNASeq tends to have differences in things like mitochondrial genes etc, which you can account for using tools like SCTransform but in…
Comment: Why does assigning genes with biomart give me different values than using a tran
by
bioinfo
▴ 150
Thank you! I ended up using the transcripts_to_genes instead of biomart.
Comment: How can I calculate the OS of each patient?
by
ATpoint
82k
Please be specific. Which TCGA subset, what did you try? Show code.
Answer: mitochondrial genome assembly pipeline
by
shelkmike
★ 1.2k
A good tool for mitochondrial genome assembly is GetOrganelle (https://github.com/Kinggerm/GetOrganelle)
Comment: getting exon coordinates
by
Ram
43k
Please do not use `bioinformatics` as a tag unless your post in about the field of bioinformatics itself.
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
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Ram
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I've removed unneccessary tags - `meta` and `how-to` don't apply to this post at all, and the `forum` tag is not in use anymore.
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I assume you have posted this in nanopore community and/or on the dorado issues page on GitHub. Please come back and post an update once yo…
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Do you know if there is a way to leave chr:pos in ID if there is no matching rsid based on chromosome and position, as variants have been r…
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22k
We get this question like clockwork every 6 weeks. I'll say it one more time: **A freeze is a freeze.** Patches are not a thing th…
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ev97
▴ 20
Thanks very much for your feedback! I will take all those things in consideration once I start the analysis! Just out of curiosity, do yo…
Answer: getting exon coordinates
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ben@f
▴ 20
A combination of bash and awk can do the work, suppose you have the gff file annotation of your gene of interest and a text file with Gene…
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161k
https://www.biostars.org/p/385786/ ; <br> https://www.biostars.org/p/276608/ ; <br> https://www.biostars.org/p/411934/ ;etc... <!-- How …
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142k
I would have thought `needle` from EMBOSS would be the option to use.
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
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marco.barr
▴ 120
ok, then you should add the donor information to the PCA analysis. First create a separate dataframe for the donors, then add with `factor`…
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