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News: Online Live TScourse: Introduction to Python for Biology (Transmitting Science) July 13th-17th, 2020
online-course progranming Python
updated 11 months ago by 44k • written 4.1 years ago by ▴ 70
1
vote
0
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992
views
News: NCBI Webinar: New Variation Services for Normalizing, Remapping, and Annotating Variants
Variation dbsnp API SPDI Clinvar
updated 12 months ago by 44k • written 5.4 years ago by ▴ 70
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1.6k
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News: 16S/ ITS Metabarcoding course using QIIME2 platform
Metabarcoding
updated 12 months ago by 44k • written 5.3 years ago by ★ 2.5k
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519
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News: New Datasets Available and Extension Announcement for the precisionFDA Truth Challenge V2
R
updated 11 months ago by 44k • written 4.0 years ago by ▴ 150
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554
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News: Phase 2 Data Now Available for the precisionFDA and Georgetown ICBI Brain Cancer Challenge
gene
updated 11 months ago by 44k • written 4.3 years ago by ▴ 150
0
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0
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614
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News: Interested Phylogenetic comparative methods?
R SNP next-gen
updated 11 months ago by 44k • written 4.8 years ago by ★ 2.5k
0
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0
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703
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News: NATIONAL LEVEL HANDS ON WORKSHOP ON CRISPR-Cas9
CRISPR-Cas9 sequence next-gen
updated 12 months ago by 44k • written 5.3 years ago by • 0
0
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0
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1.1k
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News: Spring bioinformatics courses at Edinburgh Genomics: Snakemake, Jalview, and Graphia
training workshop
updated 12 months ago by 44k • written 5.2 years ago by ▴ 40
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0
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1.0k
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News: Physalia courses in February 2020 (Berlin)
assembly R SNP sequencing
updated 11 months ago by 44k • written 4.4 years ago by ★ 2.5k
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0
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152
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News: Cellosaurus release 49 is available
cell biocuration line database news knowledgebase
21 days ago by Amos Bairoch ▴ 120
1
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0
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1.0k
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News: Genomic Data Visualization using R
R
updated 12 months ago by 44k • written 5.3 years ago by ★ 2.5k
0
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0
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872
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News: Programming for Biomedical Researchers @NIH, USA, April 23-26,2019
researchers biomedical
updated 12 months ago by 44k • written 5.3 years ago by ▴ 140
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0
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1.1k
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News: Training in Computational Drug Design and Discovery @NIH,USA, April 9-12,2019
biomedical drug-design training genomics RNA-Seq
updated 12 months ago by 44k • written 5.3 years ago by ▴ 140
0
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0
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1.0k
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News: Paleogenomics course in Berlin
next-gen-sequencing aDNA
updated 12 months ago by 44k • written 5.2 years ago by ★ 2.5k
0
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0
replies
889
views
News: OmicsLogic Genomics Online Program
dna next-gen alignment genomics
updated 11 months ago by 44k • written 4.9 years ago by ▴ 340
2
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0
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671
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News: Online course - low-coverage whole-genome sequencing data analysis
SNP
updated 11 months ago by 44k • written 4.0 years ago by ★ 2.5k
0
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0
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823
views
News: bioinfo-core workshop at virtual ISMB 2020
conferences ismb
updated 11 months ago by 44k • written 4.1 years ago by 5.3k
0
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0
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705
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News: Interested in Paleogenomics?
genome
updated 12 months ago by 44k • written 5.1 years ago by ★ 2.5k
0
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0
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272
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News: BLAST FASTA Files Will No Longer Be Available on the FTP Site Effective April 2024
NCBI BLAST
3 months ago by PeterC_NCBI ▴ 410
0
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0
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565
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News: precisionFDA and Georgetown-ICBI Brain Cancer Predictive Modeling Challenge Submission Reminder
genome
updated 11 months ago by 44k • written 4.4 years ago by ▴ 150
0
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0
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1.5k
views
News: Microbiome Data Analysis Using QIIME2 (MBQM01)
RNA-Seq next-gen
updated 12 months ago by 44k • written 5.1 years ago by ▴ 60
1
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0
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706
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News: The precisionFDA and Georgetown-ICBI Brain Cancer Predictive Modeling and Biomarker Discovery Challenge is now live!
brain-tumor machine-learning biomarkers
updated 11 months ago by 44k • written 4.5 years ago by ▴ 150
0
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0
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683
views
News: Gene Ontology Virtual User Meeting
Ontology GO Enrichment Gene-Ontology
updated 11 months ago by 44k • written 4.0 years ago by • 0
0
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0
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822
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News: Training in Linux for Biomedical Researchers@NIH, USA,May 13-15,2020
Linux Training Biomedical Researchers Programming
updated 11 months ago by 44k • written 4.3 years ago by ▴ 140
0
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0
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406
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News: NCBI ClinVar XML update to accommodate somatic variants
SNP XML ClinVar NCBI
4 months ago by PeterC_NCBI ▴ 410
0
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0
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1.0k
views
News: Course on Molecular Phylogeny in Poland (15-18 July 2019)
Phylogeny R Barcoding Molecular-Ecology
updated 12 months ago by 44k • written 5.2 years ago by ★ 2.5k
0
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0
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151
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News: Online course: Multivariate Data Analysis with R and vegan
Multivariate-Statistics vegan R
updated 6 weeks ago by 44k • written 6 weeks ago by ★ 2.5k
0
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0
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190
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News: Goodbye, Slow Code? How BioNumpy can Redefine Python’s Role in Bioinformatics!
BioNumPy Python NumPy
updated 24 days ago by 44k • written 24 days ago by • 0
1
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0
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432
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News: Spatial Omics course
Spatial-Omics Multiplexed-Image-Analysis
updated 7 months ago by 44k • written 9 months ago by ★ 2.5k
0
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0
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640
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News: Training in Advanced Transcriptomics (RNASeq) Analysis @ NIH, USA
RNA-Seq sequencing
updated 11 months ago by 44k • written 4.8 years ago by ▴ 140
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0
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1.0k
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News: [Webinar] Using t-SNE for data analysis : An Introduction by Dr. Laurens van der Maaten (Inventor of t-SNE, Research Director at Facebook AI Research)
scRNA-seq webinar t-SNE
updated 11 months ago by 44k • written 3.7 years ago by ▴ 450
3
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0
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714
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News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 11 months ago by 44k • written 4.7 years ago by 6.6k
0
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0
replies
201
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News: Online course: Computation Tumor Evolution
R Cancer-Genomics Tumor-Evolution Genomics
updated 3 months ago by 44k • written 3 months ago by ★ 2.5k
2
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0
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825
views
News: Landscape Genomics course ONLINE
snp R next-gen
updated 11 months ago by 44k • written 4.1 years ago by ★ 2.5k
1
vote
0
replies
903
views
News: 7th Annual Mendelian Data Analysis Workshop - Learn bioinformatic tools for analysis of exome and genome sequence data for rare diseases.
sequence genome next-gen analysis
updated 12 months ago by 44k • written 5.2 years ago by ▴ 10
0
votes
0
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841
views
News: Training -bioinformatics workflow with Snakemake in Canada with Johannes Koster
Python
updated 12 months ago by 44k • written 5.1 years ago by ★ 2.5k
0
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0
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199
views
News: Online course: Analysis of Prokaryotic Pangenomes (Last call)
Prokaryotic Bacterial-Genomics Pangenomics
updated 8 weeks ago by 44k • written 8 weeks ago by ★ 2.5k
0
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0
replies
846
views
News: EMBL PhD programme applications open
phd embl
updated 11 months ago by 44k • written 4.7 years ago by 23k
0
votes
0
replies
1.1k
views
News: Training in Statistical Analysis using R @NIH, March 20-22,2019
RStudio Statistical-Analysis training
updated 12 months ago by 44k • written 5.3 years ago by ▴ 140
0
votes
0
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457
views
News: 2-day Course on Introduction to Nextflow
Workflow Reproducibility Nextflow
updated 10 months ago by 44k • written 10 months ago by ★ 2.5k
1
vote
0
replies
1.1k
views
News: ONLINE COURSE Introduction to R for ecologists and evolutionary biologists (IRFB04) This course will be delivered live
R
updated 11 months ago by 44k • written 4.0 years ago by ▴ 110
0
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0
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367
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News: Course - Reproducibility Data Analysis with R
R renv Version-Control Reproducibility
updated 7 months ago by 44k • written 8 months ago by ★ 2.5k
0
votes
0
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346
views
News: Course: Seascape Genomics in R course
R GEA Seascape-Genomics Adaptation-Genomics
updated 7 months ago by 44k • written 7 months ago by ★ 2.5k
0
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0
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740
views
News: Last chance to register for online RNA-Seq Workshop June 1-4
RNA-Seq
updated 11 months ago by 44k • written 4.0 years ago by ▴ 30
0
votes
0
replies
765
views
News: EMBO | EMBL Symposium: The Organism and its Environment
genotype organisms biological chemical phenotype
updated 11 months ago by 44k • written 4.8 years ago by ▴ 10
2
votes
0
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736
views
News: Course in Berlin: Data visualization IN R with ggplot2
dataviz R ggplot2 tidyverse
updated 11 months ago by 44k • written 4.5 years ago by ★ 2.5k
1
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0
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445
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News: Good bioinformatics training resources
NGS
updated 11 months ago by 162k • written 11 months ago by ▴ 80
2
votes
0
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553
views
News: Registration open for Nextflow Summit 2023, and free online Nextflow / nf-core training
nextflow
10 months ago by Marcel Ribeiro-Dantas ▴ 470
0
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0
replies
192
views
News: Online course: Adaptation Genomics
StructuralVariants Selection AdaptationGenomics PopulationStructure
9 weeks ago by carlopecoraro2 ★ 2.5k
0
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0
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262
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News: Online course on Genome Assembly and Annotation (1 seat left)
Galaxy GenomeAssembly GenomeAnnotation
10 weeks ago by carlopecoraro2 ★ 2.5k
529 results • Page 7 of 11
Recent Votes
A: Add contig lenght to VCF header in a robust way
Answer: ComplexHeatmap - How to change fontsize of rowAnnotation
Comment: Harmony integration group.by.var parameter
Answer: Harmony integration group.by.var parameter
A: Blast - Formatting Output
Answer: Why some SNP's allele frequencies in gnomAD are so different between v2 and v4?
Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
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Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage by Brian Bushnell 20k
I examined nine 10B runs and five 25B runs (we just started getting 25B flowcells a few months ago). I did not pay close attention but it …
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage by GenoMax 142k
> I don't know how widespread these issues are outside of JGI. Very few small/medium sequencing centers likely have NovaSeq X. This is the…
Comment: Introducing NovaDemux, a Sequence Demultiplexer that Increases Yield and Salvage by Brian Bushnell 20k
Supporting figures, taken from some slides I prepared for internal use. HDist 0, 1, and 2 correspond to 0, 1, and 2 mismatches allowed in …
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
This works. Thank you so so much!
Comment: Harmony integration group.by.var parameter by jared.andrews07 ★ 17k
>I am not sure, but using "Sample_ID" might remove the differences between the conditions right ? More than likely, it'd at least impact t…
Comment: Harmony integration group.by.var parameter by Picasa ▴ 640
Thanks jared.andrews07 for your answer. So, you are suggesting to use only "Donor" in the integration? ```r RunHarmony(seu_obj, group.by.…
Comment: Single cell analysis: Unable to subset cells in seurat object using desired nFea by sc_analysis • 0
I am not sure what should be the cut off. Looking at the vlnplot before subsetting i thought most of the cells are falling under 7500 nfeat…
Comment: How to calculate cell type frequency between two groups in single cell data by Sara ▴ 30
Thank you for your comment and sorry if this question might be so basic. How can I normalize the number of cells? If I am not wrong the i…
Comment: Bowtie 1.3.1 alignment error as array 21720,23124 produces sam bam files by Deepthi • 0
I unzipped the fastq files to check whether reads are trimmed adapter or not. I have checked the quality control using fastqc they are go…
Comment: Mutation counts corrected by number of samples by Ram 44k
> I want to compare the number of mutations This comparison will give you literally no useful information.
Answer: How to scrape BioMart data from https://sorfs.ugent.be/ website by Pierre Lindenbaum 162k
something like: seq 1 100 4377380 | while read F ; do wget --no-check-certificate -O - "https://sorfs.ugent.be/database/micrope…
Answer: Harmony integration group.by.var parameter by jared.andrews07 ★ 17k
The variability explained by the variables provided to `group.by.vars` is what Harmony will try to remove. Assuming you want to remove the …
Answer: Why some SNP's allele frequencies in gnomAD are so different between v2 and v4? by Jeremy Leipzig 22k
That SNP is in an HLA gene which has had a lot of attention and improvement over the years, ranging from kits to software to the reference …
Comment: Overlapping clusters for different biological conditions: Seurat, UMAP by Bastien Hervé 5.3k
What is the need of PBMC in your analysis ? If none, removing them from the beginning will allow your clusters to be more specific to your …
Answer: How to calculate cell type frequency between two groups in single cell data by Bastien Hervé 5.3k
I believe `sample_id` are your replicates in either `patient` or `control`. You can do it manually by normalizing the number of cells yo…
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