0
votes
0
replies
70
views
0
votes
1
reply
117
views
0
votes
2
replies
160
views
0
votes
0
replies
56
views
12 hours ago by
Shaimaa Gamal
▴
10
0
votes
3
replies
104
views
0
votes
1
reply
94
views
0
votes
1
reply
100
views
0
votes
0
replies
48
views
0
votes
0
replies
56
views
updated 5 hours ago by
ATpoint
82k
•
written 6 hours ago by
yura.grabovska
▴
70
0
votes
0
replies
48
views
0
votes
0
replies
46
views
0
votes
1
reply
62
views
4 hours ago by
asalimih
▴
60
0
votes
1
reply
66
views
updated 3 hours ago by
yura.grabovska
▴
70
•
written 3 hours ago by
ev97
▴
20
0
votes
2
replies
72
views
0
votes
0
replies
29
views
updated 2 hours ago by
GenoMax
142k
•
written 2 hours ago by
Rodolfo Adrián
•
0
0
votes
0
replies
15
views
0
votes
0
replies
107
views
0
votes
0
replies
11
views
0
votes
0
replies
121
views
0
votes
0
replies
116
views
updated 6 days ago by
Ram
43k
•
written 6 days ago by
curious_butterfly
•
0
0
votes
0
replies
179
views
0
votes
0
replies
106
views
0
votes
0
replies
186
views
0
votes
1
reply
150
views
updated 6 days ago by
Ram
43k
•
written 6 days ago by
Lambodarswain316
•
0
0
votes
0
replies
157
views
5 days ago by
RT
▴
10
0
votes
0
replies
152
views
0
votes
0
replies
141
views
0
votes
0
replies
154
views
0
votes
2
replies
224
views
0
votes
1
reply
213
views
0
votes
1
reply
188
views
0
votes
0
replies
167
views
0
votes
1
reply
184
views
updated 5 days ago by
GenoMax
142k
•
written 5 days ago by
maria.soler
•
0
0
votes
2
replies
268
views
0
votes
1
reply
217
views
0
votes
2
replies
223
views
updated 4 days ago by
Ram
43k
•
written 6 days ago by
sainavyav22
•
0
0
votes
1
reply
199
views
Recent Votes
Recent Locations •
All
United States, just now
United States, just now
WCIP | Glasgow | UK, 2 minutes ago
Chile, 2 minutes ago
United States, 2 minutes ago
United States, 3 minutes ago
Spain, 3 minutes ago
Recent Awards •
All
Popular Question to
Chironex
▴
40
Scholar to
rpolicastro
13k
Popular Question to
Amr
▴
160
Popular Question to
asalimih
▴
60
Popular Question to
nd48
▴
20
Recent Replies
Comment: Filtering VCF files based on VAF giving incorrect results
by
Pierre Lindenbaum
161k
> Do you think my commands were correct?
I'm not familiar enough with this bcftools syntax.
but what if there is no AD, what if both…
Answer: How can you *consistently* download BioProject IDs from NCBI's BioSample databas
by
Ash
•
0
I know this was asked several years ago, but finding this post helped me solve my own problem and in the process I solved this one too.
…
Answer: DEG analysis with limma and contrast matrix using multiple Parkinson's cohorts i
by
swbarnes2
14k
Would Parkinson's be expected to have an effect on blood cells? Neurons, sure, but blood cells?
Comment: Doubt about the process of annotation, detection, identification and classificat
by
MarcosCosta
•
0
Thank you very much, you've helped me a lot.
Could you suggest a book or article that offers a complete explanation of these processes?
Comment: Filtering VCF files based on VAF giving incorrect results
by
Arton
•
0
Thank you. I can't try a completely new tool but I will keep your command for future use. Do you think my commands were correct? For exampl…
Comment: Genotyping sites with N in reference genome
by
Zhenyu Zhang
★
1.2k
Whether N -> A/T/G/C represents a variant is heavily dependent on the tool itself, and I know most tools don't. Since you don't see it in y…
Comment: calculating genomic coverage/ base overlap in R
by
marco.barr
▴
110
The code seems correct at first glance... How did you generate the data in the Excel file? Have you checked the exon annotations? You could…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
GenoMax
142k
Did you remeber to unzip/untar the `nt` preformatted files that you downloaded?
Comment: Genotyping sites with N in reference genome
by
shpak.max
▴
50
Just to clarify, I have set additional sites in the reference genome to 'N', which means (based on your statement) that these will not be g…
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU
by
Pierre Lindenbaum
161k
see https://www.biostars.org/p/9496674/
<!-- when i runed blastn(version 2.15) and nt database(latest version). I used aspera to download…
Answer: Genotyping sites with N in reference genome
by
Pierre Lindenbaum
161k
> Does UnifiedGenotyper skip/ignore sites where the reference genotype is N
yes. The variant is in YOUR data, not in the reference where '…
Comment: Can 5' and 3' scRNAseq be processed with the same pipeline?
by
yura.grabovska
▴
70
Do you have samples that should in theory have a good degree over overlap in terms of cell types across the two sequencing types?
I would …
Comment: Wrong ZYGOSITY by ensembl vep on DeepVariant vcf file
by
asalimih
▴
60
I found out that vep is only checking the GT field therefore assigning HOM to the Zygosity. Therefore the problem should be from deepvarian…
Comment: Add stats to boxplot in R
by
Lélé
▴
10
To remove "Kruskall Wallis" you can try adding the argument label="p" or label = "p.signif" which displays the p-value or *** like this:
…
Traffic: 2924 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6