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1,000 results • Page
4 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
141
views
Reparametrization of .str (param penalty > 100) File from CGenFF for Ligand Simulation in GROMACS
Simulation
CGenFF
Gromacs
VMD
13 days ago by
Mamatha Y S
• 0
0
votes
2
replies
301
views
bam merging for archaic samples
samtools
bam
updated 12 days ago by
Ram
43k • written 13 days ago by
Matteo Ungaro
▴ 100
1
vote
0
replies
553
views
The majority of the sequences in Trinity ID do not start from start codons. Can the sequences still be used for primer design and validation?
Primers
TRINITY
14 days ago by
mathavanbioinfo
▴ 90
0
votes
0
replies
233
views
Using samtools with GCS (google cloud storage) on a docker container seems to give "Protocol Not Supported" error
samtools
gcs
13 days ago by
abhishekghadge
• 0
2
votes
5
replies
749
views
what's the genomic location and name of gene responsible for orange and black patches in calico cats
genomes
updated 13 days ago by
Jesse
▴ 740 • written 14 days ago by
Ann
★ 2.4k
0
votes
0
replies
201
views
agilent microarray gpl data does not have gene symbol column
microarray
agilent
gpl
updated 14 days ago by
Ram
43k • written 14 days ago by
mja
• 0
0
votes
0
replies
200
views
scRNA Cluster frequency
CV
PCA
scRNA
Cluster-Frequency
14 days ago by
Nitin
• 0
0
votes
0
replies
195
views
Chemical structure validation
structure
cap
validation
metabolite
14 days ago by
Rodolfo Adrián
• 0
0
votes
1
reply
287
views
Downloading the raw microarray data from GEO
.gpr
microarray
.CEL
updated 14 days ago by
GenoMax
142k • written 14 days ago by
bioyas
▴ 10
0
votes
0
replies
220
views
Copy number variation plot
Copy-number-variation
genomics
updated 14 days ago by
Ram
43k • written 14 days ago by
Emmi
• 0
0
votes
0
replies
196
views
SNP calling with ANGSD and ngsLD. How many SNPs?
lcwgs
ngsTools
ANGSD
genomics
14 days ago by
DanielEB_fisk
▴ 20
0
votes
1
reply
305
views
Could you please assist in identifying this cluster?
single-cell
updated 14 days ago by
Ram
43k • written 14 days ago by
carolofharvest
▴ 30
0
votes
0
replies
216
views
Conversion to tree format
PLINK
bed
Figtree
SplitsTree
updated 14 days ago by
Ram
43k • written 14 days ago by
Dinmukhamed
• 0
0
votes
0
replies
209
views
miRDeep2: How to get the read counts
mirdeep2
14 days ago by
Atul K.
• 0
0
votes
0
replies
213
views
Lncipedia GTF file error
Proteomics
updated 14 days ago by
Ram
43k • written 15 days ago by
atharvakarkare14
▴ 30
3
votes
3
replies
515
views
Free/open source 23andme-like analysis
SNPs
genomics
NGS
VCF
updated 14 days ago by
swbarnes2
14k • written 15 days ago by
noodle
▴ 580
0
votes
2
replies
571
views
How to get the reference panel for UKBB
UKBB
GWAS
clump
15 days ago by
航太郎
• 0
0
votes
0
replies
227
views
create genewise sync file in popoolation
popoolation
updated 15 days ago by
GenoMax
142k • written 15 days ago by
N.Y.Wiyana-Hewage
• 0
0
votes
2
replies
405
views
error in coding potential calculator CPC2
cpc
CPC2
coding-potential
15 days ago by
Ashok
• 0
0
votes
2
replies
446
views
miRNAs quantification using mirdeep2 tool
differential-expression
mirdeep2
miRNA
15 days ago by
Ashok
• 0
0
votes
0
replies
227
views
Variant Generation Using Longshot
long-reads
variant-calling
ONT
minion
longshot
updated 15 days ago by
Ram
43k • written 15 days ago by
samuelkalandarov2002
▴ 10
0
votes
2
replies
452
views
QC exclusion of A/T or G/C alleles to avoid strand issues
quality-control
SNV
QC
SNP
14 days ago by
_quantum_girl_
▴ 10
0
votes
0
replies
218
views
traying to make a maf from an already annotated vcf
vcf
vcf2maf
maf
maftools
VEP
11 days ago by
Javier
• 0
0
votes
0
replies
195
views
Pruning with plink finds a majority of SNPs in very high LD
LD
SNP
plink
pruning
15 days ago by
enferdeflame
• 0
1
vote
1
reply
440
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 13 days ago by
Gordon Smyth
★ 7.1k • written 15 days ago by
Chris
▴ 260
0
votes
1
reply
412
views
How to add rowLinks, rowTree in SummarizedExperiment manually.
phylogenetic-tree
microbiome
updated 15 days ago by
Ram
43k • written 19 months ago by
Muhammad
• 0
0
votes
0
replies
169
views
How can I obtain the tissue or sample name alongside the Tau score in tspex?
tau-score
tspex
updated 15 days ago by
Ram
43k • written 15 days ago by
bioinfo223
▴ 10
0
votes
0
replies
188
views
How to root an unrooted tree with a known root tree?
phylogenetics
rooting
R
15 days ago by
P.
• 0
0
votes
0
replies
179
views
Issues with SnpEff Assuming Circular Chromosomes in Eukaryotic Genome Analysis
snpEff
16 days ago by
ekirsch
• 0
1
vote
1
reply
477
views
Load a full GFF3 into annotation track using arrow (Apollo)
arrow
python-apollo
Apollo
14 days ago by
renan.igor
• 0
0
votes
0
replies
200
views
filter the most significant ligand and receptors in netVisual_bubble in cell chat
cellchat
16 days ago by
synat.keam
▴ 100
0
votes
1
reply
290
views
assembly using CCS, CLR, CCS_CLR sequences together?
assembly
updated 16 days ago by
GenoMax
142k • written 16 days ago by
ycts
• 0
0
votes
4
replies
620
views
Per base sequence content failed miserably
fastqc
sequence
trimmomatic
NGS
assembly
15 days ago by
Kai Xin
• 0
1
vote
1
reply
246
views
Retrieve a % coverage for each transcript
RNA-seq
updated 16 days ago by
Ram
43k • written 16 days ago by
jammydodger123456
▴ 40
0
votes
2
replies
401
views
How can I solve this error?
metal
16 days ago by
22211020193
• 0
0
votes
0
replies
179
views
Struggling to lift genome builds
PLINK
liftover
GWAS
updated 16 days ago by
GenoMax
142k • written 16 days ago by
srimmer
• 0
1
vote
2
replies
305
views
Can I readmap short reads to rDNA references?
rDNA
assembly
updated 16 days ago by
Ram
43k • written 16 days ago by
aniigodwinn
• 0
0
votes
0
replies
365
views
Looking for an explanation as to what the Peak Score is from HOMER, not finding any answers on Biostars yet
Homer
ATAC-seq
16 days ago by
Ronin
• 0
2
votes
7
replies
896
views
Removing duplicates
duplicates
ONT
minimap2
updated 15 days ago by
noodle
▴ 580 • written 16 days ago by
quentinperriere
• 0
0
votes
1
reply
217
views
Annotating a dataset with gnomAD v4 using Hail
Python
Sequencing
Hail
Exome
Annotation
updated 16 days ago by
DKA
▴ 40 • written 16 days ago by
james.melhorn
• 0
0
votes
1
reply
207
views
Freyja plot error
Freyja
updated 16 days ago by
Ram
43k • written 16 days ago by
Adyasha
• 0
0
votes
0
replies
173
views
BIOM format can contain tabular data ?
BIOM
phyloseq
biomformat
R
16 days ago by
chemokine-1
▴ 10
0
votes
4
replies
547
views
How to reduce the variation of CIBERSORTx results?
CIBERSORTx
deconcolution
16 days ago by
feather-W
• 0
0
votes
2
replies
272
views
Bedmethyl file format
bedmethyl
methylation
updated 16 days ago by
GenoMax
142k • written 16 days ago by
njornet
▴ 20
0
votes
0
replies
186
views
sequence table for DADA2 chimera filtering
OTU
sequencetable
DADA2
17 days ago by
Ali
• 0
2
votes
4
replies
352
views
SnpEff annotates coding duplication as intronic?
snpeff
17 days ago by
kirill.zaslavsky
• 0
0
votes
2
replies
281
views
Calculating percentage of cells proliferating in single cell rna seq data
statistics
scRNA-seq
proliferation
16 days ago by
mropri
▴ 150
0
votes
0
replies
159
views
Input into WGCNA and Error on constructNetworks on RNA-Seq data - unique rownames
rownames
RNA-Seq
WGCNA
unique
17 days ago by
shasabhi1
• 0
0
votes
0
replies
147
views
How to summarize dbCAN3 results
dbCAN
CAZy
CAZyme
dbCAN3
dbCAN2
17 days ago by
Nishat
• 0
0
votes
0
replies
176
views
what exactly is a k-mer table (remora)?
remora
basecall
17 days ago by
anne
• 0
1,000 results • Page
4 of 20
Recent Votes
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
A: After read mapping, count exons or genes?
After read mapping, count exons or genes?
Merging a large number of VCF files
A: Merging a large number of VCF files
A: pulling snps from vcf file using ids
pulling snps from vcf file using ids
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Comment: Segmentation error while using a tool
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Comment: Extracting mutation status from MAF files - TCGA
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Thanujay S
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Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool
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Isn't the download link available above the plot: http://bis.zju.edu.cn/HCL/data/DGE/Adult-Transverse-Colon1_dge.txt.gz
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The expression levels do not change but the way that you have parametrized the expression levels does change. The two design matrices give…
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