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1,000 results • Page
5 of 20
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
150
views
Repeat expansion identification tools for long-read data
fragilex
repeatexpansion
long-read
fmr1
17 days ago by
adarsh_pp
▴ 40
0
votes
0
replies
158
views
FreeBayes detection capacity
reads
freebayes
long
18 days ago by
quentinperriere
• 0
0
votes
2
replies
274
views
VCF annotation with gnomADv4 using R package
annotation
gnomADv4
R
VCF
15 days ago by
DKA
▴ 40
0
votes
0
replies
170
views
Plotting heatmap of genes in each samples scRNA in Seurat
scRNA
heatmap
18 days ago by
Hien
• 0
0
votes
2
replies
309
views
Merging Outputs from plink --assoc and --hardy to Produce Table
PLINK
PANDAS
R
16 days ago by
Koketso
• 0
0
votes
0
replies
198
views
Novel cyclic peptide structure prediction
protein
structure-prediction
alphafold
peptide
updated 18 days ago by
Ram
43k • written 18 days ago by
menyawino
• 0
1
vote
3
replies
379
views
Ensembl gene id conversion
biomart
ensembl
updated 16 days ago by
ATpoint
82k • written 18 days ago by
naveedhasan2000
• 0
1
vote
2
replies
333
views
Extracting information from gff3 file produced by augustus
augustus
gff3
updated 17 days ago by
Istvan Albert
100k • written 19 days ago by
Jiang
• 0
0
votes
0
replies
200
views
Core SNP tree VS. concatenated core genome tree
phylogenetic
tree
SNP
19 days ago by
YiweiZhu
▴ 30
0
votes
2
replies
332
views
Help with understanding the identifier mapping tables in the backend of HUMAnN
metagenomics
metacyc
enzyme
biobakery
humann
19 days ago by
O.rka
▴ 710
0
votes
6
replies
585
views
PacBio adapters in transcriptome assembly from short read data?
adapter
transcriptome
sequencing
pacbio
vecscreen
17 days ago by
Dunois
★ 2.5k
4
votes
7
replies
582
views
DESeq2 Multifactor Design
RNA-seq
DESeq2
updated 19 days ago by
Ram
43k • written 20 days ago by
AHerik
▴ 20
0
votes
0
replies
199
views
SeuratDisk: including "counts" dataset in conversion to AnnData
Seurat
SeuratDisk
AnnData
updated 20 days ago by
Ram
43k • written 20 days ago by
roussine
▴ 10
0
votes
0
replies
188
views
I am getting more annotation hits from HOMER than I have actual peaks. Is that normal?
ATAC-seq
HOMER
20 days ago by
Ronin
• 0
4
votes
13
replies
927
views
RNAseq of primary tumor and metastases in two different organ
metastases
RNA-seq
DEG
R
updated 16 days ago by
BioinfGuru
★ 1.7k • written 21 days ago by
matteo.levorato
• 0
2
votes
1
reply
262
views
VEP annotation --per_gene allele choice
VEP
updated 20 days ago by
Ram
43k • written 20 days ago by
atariw
▴ 10
0
votes
2
replies
300
views
Are GeneExpression Subtype annotations removed from TCGA-GBM?
tcga-gbm
subtyping
tcga
updated 20 days ago by
Zhenyu Zhang
★ 1.2k • written 20 days ago by
Apollonia
• 0
1
vote
1
reply
256
views
RNA seq normalization and gene gene correlation
rna-seq
pearson-correlation
vst
updated 20 days ago by
Ram
43k • written 20 days ago by
Fish
• 0
0
votes
0
replies
193
views
Snakemake fails to find conda in PBS
snakemake
20 days ago by
yixinzeng
• 0
0
votes
0
replies
193
views
KaryoPlot: Gene coverage over centromeric regions
Gene
coverage
Centromere
Bedtools
20 days ago by
Mary
• 0
0
votes
0
replies
186
views
Protein stability analysis
mutation
analysis
20 days ago by
marco.barr
▴ 90
1
vote
4
replies
414
views
what is the normal range of htseq-count output for homo sapiens RNA-Seq
Transcriptomics
htseq-count
RNA-Seq
NGS
hisat2
updated 19 days ago by
BioinfGuru
★ 1.7k • written 21 days ago by
Morteza
• 0
3
votes
1
reply
278
views
how to change the gene header names in a fasta file?
fasta
bioawk
awk
seqkit
updated 21 days ago by
Ram
43k • written 21 days ago by
rj.rezwan
• 0
0
votes
0
replies
176
views
Multiple Spike-Ins
MeRIP
Spike-In
21 days ago by
Adam
▴ 30
0
votes
0
replies
165
views
Tools for Sequence Consensus
Consensus-Sequence
bacteria
updated 21 days ago by
Ram
43k • written 21 days ago by
Reno
• 0
2
votes
2
replies
286
views
DepMap: siRNA and CRSIPR discrepancy
DepMap
updated 21 days ago by
ATpoint
82k • written 21 days ago by
Shicheng Guo
★ 9.4k
1
vote
0
replies
165
views
phasing tumor long-reads
nanopore
ONT
haplotag
phasing
tumor
21 days ago by
eesiribloom
▴ 80
0
votes
3
replies
340
views
10x GEX and ADT data analysis in Seurat
Seurat
scRNA-seq
ADT
Cite-seq
GEX
updated 20 days ago by
ATpoint
82k • written 21 days ago by
gdfsnkfns
• 0
0
votes
4
replies
337
views
Questions about transfering wgs file to reference genome file
fasta
cram
genome
21 days ago by
me
• 0
0
votes
2
replies
280
views
WGCNA
PCA
WGCNA
EIGENGENE
21 days ago by
rajasekargutha
▴ 60
0
votes
3
replies
286
views
BLASTP web- <20aa peptides- interpreting results/ minimum E value?
blast
peptide
blastp
alignment
updated 21 days ago by
GenoMax
142k • written 21 days ago by
neish
• 0
1
vote
0
replies
162
views
DESeq2 comparing timepoints within treatment and account for background control change
RNAseq
DEG
DESeq2
updated 21 days ago by
Ram
43k • written 21 days ago by
ian.will
▴ 30
0
votes
0
replies
111
views
Surrogate variable analysis for paired RNA seq experiment
sva
rnaseq
ruvseq
21 days ago by
nhaus
▴ 310
1
vote
3
replies
298
views
True variants selection
vcf
bcftools
updated 20 days ago by
dthorbur
★ 1.9k • written 21 days ago by
maevalefeuvre
• 0
0
votes
1
reply
176
views
How to reveal real AF of variant if duplicates can't be removed (such as in amplicon-seq)
allele-frequency
amplicon-seq
updated 21 days ago by
Ram
43k • written 21 days ago by
CY
▴ 750
0
votes
0
replies
115
views
Creating a BSgenome data package from a NCBI assembly - Virus
Virus
BSgenomeForge
BSgenome
R
21 days ago by
JirMan
▴ 20
1
vote
1
reply
182
views
Failed to download data from EBI with ascp
EBI
aspera
updated 21 days ago by
GenoMax
142k • written 22 days ago by
biock
▴ 60
0
votes
0
replies
406
views
BETA whether on the same scale when performing rank-based inverse normal transformation on the same type of phenotype data for two cohorts separately…
normal
inverse
transformation
22 days ago by
Isaac
• 0
0
votes
0
replies
116
views
Combining VG graphs
vg
graphs
combine
22 days ago by
AshleeThomson
▴ 80
0
votes
0
replies
121
views
Installing SALSA and HIRise scafolding software
scafolding
SALSA
genome-assembly
HIRise
updated 21 days ago by
Ram
43k • written 22 days ago by
Lissa Cruz Saavedra
• 0
0
votes
1
reply
194
views
Extract Di-nucleotide/Tri-Nucleotide substitution frequencies from MSA/VCF file
MSA
substitution
VCFstats
Evolution
VCF
updated 22 days ago by
Pierre Lindenbaum
161k • written 22 days ago by
Saran
▴ 50
0
votes
2
replies
288
views
Abundance Calculation in MetaPhlAn 3: Methodology, TPM or RPKM, and the Treatment of Unclassified Reads
MetaPhlAn
Normalization
RPKM
TPM
20 days ago by
ramin.k2013
• 0
0
votes
0
replies
167
views
Normalization in Metagenomics Sequencing By Total Number of Reads: Pre- or Post-Filtering and the Role of Unclassified Reads
Normalization
Metagenomics
updated 21 days ago by
Ram
43k • written 22 days ago by
ramin.k2013
• 0
0
votes
1
reply
186
views
Help with generating annotation database for dog genome to use in ANNOVAR for variant annotation of dog tumor sequences
ANNOVAR
updated 22 days ago by
Pierre Lindenbaum
161k • written 22 days ago by
sainavyav22
• 0
0
votes
9
replies
614
views
99.9999% of Q30 bases is normal?
RNA-seq
fastp
updated 21 days ago by
LauferVA
4.2k • written 22 days ago by
Aki
▴ 20
0
votes
0
replies
102
views
Issue while using circle_dat function from GOplot in R
GOplot
R
22 days ago by
ckelly96
• 0
0
votes
2
replies
214
views
Can't figure out plink --sample-diff
plink
22 days ago by
curious
▴ 750
0
votes
1
reply
160
views
Geneious Prime (Consense Sequence)
Consense
Sequence
updated 22 days ago by
GenoMax
142k • written 22 days ago by
Reno
• 0
1
vote
2
replies
240
views
convert a seurat object to expressionset
Seurat
22 days ago by
Bine
▴ 60
2
votes
4
replies
416
views
Per Base Sequence Content - continuous raise of G%
fastqc
updated 22 days ago by
GenoMax
142k • written 23 days ago by
pl.terzian
• 0
1,000 results • Page
5 of 20
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How to Calulate Allele Frequency from a VCF File?
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Download SAM/BAM files from SRA takes ages!!!
Comment: Bedtools merge minimum overlap?
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by
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▴ 180
In case it helps: https://haroldpimentel.wordpress.com/2014/05/08/what-the-fpkm-a-review-rna-seq-expression-units
Comment: What analysis suitable to identify similarly expressed genes between two samples
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• 0
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Comment: Does comparing two different groups to a common third group introduce bias in th
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82k
Note that by basic algebra A vs C and B vs C is the same as A vs B, so you might rethink your analysis to answer your question in a much si…
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Yes, why not? If it works for you like that, bingo!
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A late reply, but I just solved exactly the same error upon a request in the team. Please see if it helps in case anyone meets the same err…
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Bedtools [intersect][1] allows you to specify the fraction of overlap between two BED (or BAM) files using the F/f/r flags. You could split…
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Sorry, I should have been more specific. By "that list" I mean what's populated in the Therapeutic Agents tab when no filters are applied. …
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