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1.0k
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from dexseq results to alternative splicing events identification
dexseq alternative splicing
3.6 years ago by Omics data mining ▴ 260
0
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2
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1.2k
views
Differential transcript usage from Salmon data
DTU rnaseqDTU transcript differential stageR
updated 2.7 years ago by ▴ 150 • written 3.6 years ago by ▴ 260
2
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3
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1.7k
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inter and intra-sample variance in 10X visium spatial transcriptome data
transcriptome cell single spatial
updated 3.0 years ago by 153k • written 3.6 years ago by ▴ 260
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0
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1.7k
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Comment: Comment: inter and intra-sample variance in 10X visium spatial transcriptome data
updated 3.0 years ago by 153k • written 3.6 years ago by ▴ 260
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1
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2.0k
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Comment: Comment: unmapped reads from 10X visium spaceranger bam file
updated 3.6 years ago by 166k • written 3.6 years ago by ▴ 260
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1
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2.0k
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Comment: Comment: unmapped reads from 10X visium spaceranger bam file
3.6 years ago by Omics data mining ▴ 260
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5
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2.0k
views
unmapped reads from 10X visium spaceranger bam file
transcriptome 10X spatial visium
updated 3.6 years ago by 166k • written 3.6 years ago by ▴ 260
6
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4
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2.8k
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gene set enrichment in clusterprofiler
clusterprofiler gene enrichment analysis set
updated 3.6 years ago by ▴ 40 • written 3.6 years ago by ▴ 260
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0
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2.1k
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Comment: Comment: gseGO for multiple groups
3.6 years ago by Omics data mining ▴ 260
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2
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2.1k
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gseGO for multiple groups
clusterProfiler gseKEGG gseGO
3.6 years ago by Omics data mining ▴ 260
1
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2
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2.2k
views
Upset plot in ComplexHeatmap
ComplexHeatmap Upsetplot
updated 3.7 years ago by ★ 19k • written 3.7 years ago by ▴ 260
0
votes
1
reply
1.4k
views
impulseDE2 input
normalized count input raw impulseDE2
updated 3.7 years ago by ▴ 210 • written 3.7 years ago by ▴ 260
0
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1
reply
1.6k
views
Comment: Comment: spatial 10X visum analysis
3.8 years ago by Omics data mining ▴ 260
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1
reply
7.5k
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Comment: Comment: How to compare two Seurat object (sample) in order to find top markers?
3.8 years ago by Omics data mining ▴ 260
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3
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1.6k
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spatial 10X visum analysis
spatial 10X visium
updated 3.8 years ago by 13k • written 3.8 years ago by ▴ 260
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0
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9.5k
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Comment: Comment: conversion of ensembl to gene_symbol in seurat
3.8 years ago by Omics data mining ▴ 260
0
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2
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9.5k
views
conversion of ensembl to gene_symbol in seurat
Seurat conversion spatial transcriptome
3.8 years ago by Omics data mining ▴ 260
0
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0
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3.1k
views
Comment: Comment: UMI extraction from 10X visium spatial transcriptome data
3.8 years ago by Omics data mining ▴ 260
2
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4
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3.1k
views
UMI extraction from 10X visium spatial transcriptome data
umi_tools UMI spatial-transcriptome
updated 2.3 years ago by 45k • written 3.8 years ago by ▴ 260
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0
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3.1k
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Comment: Comment: UMI extraction from 10X visium spatial transcriptome data
updated 3.8 years ago by 153k • written 3.8 years ago by ▴ 260
0
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0
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662
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Patient-to-patient similarities network
SNFtools multi omics
4.6 years ago by Omics data mining ▴ 260
0
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0
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778
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Error running gene expression based ProTINA
ProTINA Time-Series gene-expression
updated 2.3 years ago by 45k • written 4.8 years ago by ▴ 260
0
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2
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1.4k
views
Selection of SNPs after imputation
gwas imputation
updated 5.1 years ago by ▴ 150 • written 5.1 years ago by ▴ 260
0
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0
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1.5k
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GetPileupSummaries for each chromosome
GATK
5.2 years ago by Omics data mining ▴ 260
0
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1
reply
1.9k
views
Comment: C: minimum reads for the splicing event analysis ?
5.3 years ago by Omics data mining ▴ 260
1
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3
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1.9k
views
minimum reads for the splicing event analysis ?
alternative splicing isoform expression
updated 5.3 years ago by 15k • written 5.3 years ago by ▴ 260
0
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0
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908
views
include vcf header
varscan
5.6 years ago by Omics data mining ▴ 260
1
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0
replies
1.1k
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TCGA data , filtration and normalization
genomics omics TCGA normalization
5.7 years ago by Omics data mining ▴ 260
2
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6
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5.2k
views
error while running vcf2maf
vcf2maf SNP rnaseq
updated 5.7 years ago by ▴ 190 • written 7.2 years ago by ▴ 260
0
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0
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1.7k
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Comment: A: input format file for DiscoSNP software run
updated 5.8 years ago by 45k • written 9.9 years ago by ▴ 260
0
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0
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5.8k
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Answer: A: Snp Discovery From De Novo Assembly
updated 5.8 years ago by 45k • written 9.9 years ago by ▴ 260
0
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1
reply
1.1k
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TCGA array expression and rnaseq expression batch correction
tcga rnaseq expression
6.0 years ago by Omics data mining ▴ 260
2
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2
replies
1.7k
views
Input for VariantsToBinaryPed
GATK plink
updated 6.0 years ago by 11k • written 7.3 years ago by ▴ 260
0
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0
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1.5k
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Multi samples (Normal and Tumor) somatic SNPs identification
GATK SNP VCF mutlisamplevcf whole-exom
6.0 years ago by Omics data mining ▴ 260
0
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1
reply
1.0k
views
multi sample vcf to data matrix
VCF SNP GATK
updated 6.0 years ago by 89k • written 6.0 years ago by ▴ 260
1
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0
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4.2k
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Comment: C: TCGA survival data classification
6.0 years ago by Omics data mining ▴ 260
2
votes
2
replies
4.2k
views
TCGA survival data classification
TCGA survival
updated 6.0 years ago by 89k • written 6.0 years ago by ▴ 260
0
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3
replies
3.4k
views
ConsensusClusterPlus for small sample
ConsensusClusterPlus
updated 6.5 years ago by ▴ 400 • written 6.7 years ago by ▴ 260
0
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1
reply
1.7k
views
Answer: A: Merging variant calls of whole exome and RNA-seq
6.5 years ago by Omics data mining ▴ 260
0
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0
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1.1k
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Answer: C: Error of Netics : Multi omics intergration tool
6.5 years ago by Omics data mining ▴ 260
0
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1
reply
1.1k
views
Error of Netics : Multi omics intergration tool
Netics multi omics integration
updated 6.5 years ago by 48k • written 6.5 years ago by ▴ 260
0
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2
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2.9k
views
Survival analysis based on gene expression
Survival gene expression
updated 6.6 years ago by 20 • written 6.7 years ago by ▴ 260
0
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0
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3.4k
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Comment: C: ConsensusClusterPlus for small sample
6.7 years ago by Omics data mining ▴ 260
2
votes
2
replies
8.3k
views
genlist for clusterprofiler
clusterprofiler R bioconductor
updated 6.9 years ago by 12k • written 7.5 years ago by ▴ 260
0
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1
reply
2.2k
views
cytoscape subnetwork from WGCNA based modules
cytoscape TieDie subnetwork
updated 7.0 years ago by 45k • written 7.0 years ago by ▴ 260
0
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1
reply
2.5k
views
Comment: C: TCGA SNP data
7.1 years ago by Omics data mining ▴ 260
0
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1
reply
2.5k
views
Comment: C: TCGA SNP data
7.1 years ago by Omics data mining ▴ 260
0
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5
replies
2.5k
views
TCGA SNP data
TCGA maf2vcf SNPs PAAD
updated 7.1 years ago by 89k • written 7.1 years ago by ▴ 260
4
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2
replies
4.8k
views
how to create .gzi index
rnaseq genome
updated 7.2 years ago by ▴ 470 • written 7.2 years ago by ▴ 260
0
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0
replies
4.8k
views
Comment: C: how to create .gzi index
7.2 years ago by Omics data mining ▴ 260
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