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0
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0
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224
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Comment: Comment: BCR/TCR analysis using target capture sequencing data
6 days ago by J.F.Jiang ▴ 900
0
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2
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224
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BCR/TCR analysis using target capture sequencing data
capture ngs TCR BCR
6 days ago by J.F.Jiang ▴ 900
0
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1
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409
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Comment: Comment: combine/merge closet variants into one from mutect2
21 days ago by J.F.Jiang ▴ 900
0
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1
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409
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Comment: Comment: combine/merge closet variants into one from mutect2
26 days ago by J.F.Jiang ▴ 900
0
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5
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409
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combine/merge closet variants into one from mutect2
variants mutect2 merge gatk
updated 21 days ago by 98k • written 26 days ago by ▴ 900
0
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1
reply
388
views
Comment: Comment: BCL2 fusions not detected in RNA level
4 weeks ago by J.F.Jiang ▴ 900
0
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4
replies
388
views
BCL2 fusions not detected in RNA level
fusion RNA BCL2
updated 4 weeks ago by 72k • written 4 weeks ago by ▴ 900
0
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0
replies
235
views
multiplex pcr PRIMER
sequence primer multiplex pcr
12 weeks ago by J.F.Jiang ▴ 900
0
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0
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191
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tumor fraction estimation and fragment size plot using sWGS data
fraction NGS fragment WGS tumor ctDNA
6 months ago by J.F.Jiang ▴ 900
0
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0
replies
192
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heterozygosity control from NGS data
heterozygosity NGS SNP
9 months ago by J.F.Jiang ▴ 900
0
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1
reply
555
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Comment: Comment: tumor fraction estimation for ctDNA panel sequecing data
14 months ago by J.F.Jiang ▴ 900
1
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3
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555
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tumor fraction estimation for ctDNA panel sequecing data
fraction NGS panel tumor ctDNA
updated 14 months ago by ▴ 550 • written 14 months ago by ▴ 900
0
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1
reply
470
views
hgvs annotation from VCF
VCF HGVS annotation
updated 15 months ago by 21k • written 15 months ago by ▴ 900
0
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0
replies
253
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any tool to plot the fragment profile for ctDNA samples?
fragment ctDNA
15 months ago by J.F.Jiang ▴ 900
14
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8
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12k
views
7 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 16 months ago by ▴ 10 • written 9.9 years ago by ▴ 900
3
votes
10
replies
7.2k
views
6 follow
GATK HaolotypeCaller takes too much time for variant calling
GATK HaplotypeCaller long
updated 2.0 years ago by 154k • written 5.5 years ago by ▴ 900
0
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0
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663
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genomewide CNV analysis and plot from low pass WGS data
CNV CNVSEQ WGS
2.4 years ago by J.F.Jiang ▴ 900
0
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4
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800
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public tools to distinguish germline variants from somatic ones in NGS data without matched normal
germline somatic NGS tumor
updated 2.4 years ago by 20 • written 2.5 years ago by ▴ 900
0
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0
replies
800
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Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
2.5 years ago by J.F.Jiang ▴ 900
0
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1
reply
800
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Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
2.5 years ago by J.F.Jiang ▴ 900
0
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0
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608
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best tool to evaluate the CNV status of germline samples using 1x WGS
CNV WGS
2.6 years ago by J.F.Jiang ▴ 900
0
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0
replies
498
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Max mutation allele frequency against tumor purity
tumor AF PURITY
2.8 years ago by J.F.Jiang ▴ 900
0
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1
reply
751
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Comment: C: HPV EBV typing from cancer genome data
2.8 years ago by J.F.Jiang ▴ 900
2
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4
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751
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HPV EBV typing from cancer genome data
HPV EBV NGS
updated 2.8 years ago by ★ 2.8k • written 2.8 years ago by ▴ 900
32
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12
replies
22k
views
9 follow
Bwa Mem Method For Mapping, With Or Without Trimming Reads?
bwa
updated 2.9 years ago by 20 • written 9.4 years ago by ▴ 900
0
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1
reply
834
views
LOH segment inferring from WES data for germline sample
LOH WES
3.1 years ago by J.F.Jiang ▴ 900
1
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5
replies
1.7k
views
fusion detection for DNA Sequencing data
fusion NGS DNA
updated 3.2 years ago by ★ 2.8k • written 3.2 years ago by ▴ 900
0
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1
reply
1.7k
views
Comment: C: fusion detection for DNA Sequencing data
3.2 years ago by J.F.Jiang ▴ 900
1
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0
replies
1.7k
views
Comment: C: fusion detection for DNA Sequencing data
3.2 years ago by J.F.Jiang ▴ 900
1
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0
replies
1.2k
views
Comment: C: CNV analysis for tumor panel
3.2 years ago by J.F.Jiang ▴ 900
1
vote
1
reply
540
views
looking somatic variants interpreter, AS CKB database
ckb somatic interpreter
updated 3.3 years ago by 85k • written 3.4 years ago by ▴ 900
2
votes
5
replies
2.2k
views
remove primer sequences from BAM file
bam primer
updated 3.4 years ago by • 0 • written 4.8 years ago by ▴ 900
0
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2
replies
798
views
convenient tools to collect target mapping metrics
target mapping
updated 3.4 years ago by 20 • written 3.5 years ago by ▴ 900
0
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0
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798
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Comment: C: convenient tools to collect target mapping metrics
3.5 years ago by J.F.Jiang ▴ 900
0
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0
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888
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calculate MSI STATUS using predefined MSI loci
MSI msisensor
3.6 years ago by J.F.Jiang ▴ 900
0
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1
reply
22k
views
Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
updated 3.7 years ago by 39k • written 9.4 years ago by ▴ 900
2
votes
5
replies
1.2k
views
CNV analysis for tumor panel
CNV
updated 3.9 years ago by ★ 2.8k • written 3.9 years ago by ▴ 900
1
vote
5
replies
2.5k
views
amplicon based germline CNV caller
amplicon germline CNV
updated 3.9 years ago by ▴ 90 • written 5.8 years ago by ▴ 900
0
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1
reply
1.2k
views
Comment: A: CNV analysis for tumor panel
3.9 years ago by J.F.Jiang ▴ 900
0
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2
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1.3k
views
pairwise calculation of relationship based on selected SNPs with MAF>0.3
relationship SNP
updated 4.5 years ago by 20 • written 5.5 years ago by ▴ 900
3
votes
3
replies
1.9k
views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype simulation SNP MAF LD
updated 4.5 years ago by 11k • written 5.4 years ago by ▴ 900
0
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0
replies
2.3k
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Comment: C: Free Genetic Genealogy Software
4.8 years ago by J.F.Jiang ▴ 900
0
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0
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2.2k
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Comment: C: remove primer sequences from BAM file
4.8 years ago by J.F.Jiang ▴ 900
0
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1
reply
2.2k
views
Comment: C: remove primer sequences from BAM file
updated 4.8 years ago by 47k • written 4.8 years ago by ▴ 900
0
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2
replies
1.6k
views
autosomal ancestry inference
GWAS ancestry
updated 4.8 years ago by 85k • written 4.8 years ago by ▴ 900
0
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1
reply
1.5k
views
how to genotype given SNP alleles from NGS data using freebayes
genotype NGS freebayes
updated 5.5 years ago by • 0 • written 5.7 years ago by ▴ 900
0
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0
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1.5k
views
Comment: C: extract region bam
5.5 years ago by J.F.Jiang ▴ 900
0
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2
replies
1.5k
views
extract region bam
bam region
updated 5.5 years ago by 34k • written 5.5 years ago by ▴ 900
0
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0
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1.3k
views
Comment: C: pairwise calculation of relationship based on selected SNPs with MAF>0.3
5.5 years ago by J.F.Jiang ▴ 900
0
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0
replies
7.2k
views
Comment: C: GATK HaolotypeCaller takes too much time for variant calling
5.5 years ago by J.F.Jiang ▴ 900
272 results • Page 1 of 6
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